Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0009606: tropism0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0035884: arabinan biosynthetic process0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0097164: ammonium ion metabolic process0.00E+00
14GO:0045184: establishment of protein localization0.00E+00
15GO:0009734: auxin-activated signaling pathway6.14E-10
16GO:0046620: regulation of organ growth3.99E-08
17GO:0009733: response to auxin1.19E-06
18GO:0009926: auxin polar transport8.87E-06
19GO:0042793: transcription from plastid promoter2.60E-05
20GO:0010569: regulation of double-strand break repair via homologous recombination2.91E-05
21GO:0040008: regulation of growth4.72E-05
22GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway9.48E-05
23GO:0009657: plastid organization1.28E-04
24GO:0007389: pattern specification process1.28E-04
25GO:0051513: regulation of monopolar cell growth1.89E-04
26GO:0046739: transport of virus in multicellular host1.89E-04
27GO:0009658: chloroplast organization2.02E-04
28GO:2000038: regulation of stomatal complex development3.15E-04
29GO:0046656: folic acid biosynthetic process3.15E-04
30GO:0009416: response to light stimulus4.55E-04
31GO:0032876: negative regulation of DNA endoreduplication4.69E-04
32GO:0010252: auxin homeostasis5.86E-04
33GO:0035987: endodermal cell differentiation8.35E-04
34GO:0043609: regulation of carbon utilization8.35E-04
35GO:0006436: tryptophanyl-tRNA aminoacylation8.35E-04
36GO:0000066: mitochondrial ornithine transport8.35E-04
37GO:0015904: tetracycline transport8.35E-04
38GO:0034757: negative regulation of iron ion transport8.35E-04
39GO:0042659: regulation of cell fate specification8.35E-04
40GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process8.35E-04
41GO:0070509: calcium ion import8.35E-04
42GO:1901537: positive regulation of DNA demethylation8.35E-04
43GO:0090558: plant epidermis development8.35E-04
44GO:0010063: positive regulation of trichoblast fate specification8.35E-04
45GO:0010480: microsporocyte differentiation8.35E-04
46GO:1903866: palisade mesophyll development8.35E-04
47GO:0042371: vitamin K biosynthetic process8.35E-04
48GO:0046654: tetrahydrofolate biosynthetic process8.59E-04
49GO:0048437: floral organ development1.09E-03
50GO:0000160: phosphorelay signal transduction system1.25E-03
51GO:0010497: plasmodesmata-mediated intercellular transport1.66E-03
52GO:0080009: mRNA methylation1.81E-03
53GO:0009786: regulation of asymmetric cell division1.81E-03
54GO:0006529: asparagine biosynthetic process1.81E-03
55GO:2000123: positive regulation of stomatal complex development1.81E-03
56GO:0070981: L-asparagine biosynthetic process1.81E-03
57GO:1902326: positive regulation of chlorophyll biosynthetic process1.81E-03
58GO:0010271: regulation of chlorophyll catabolic process1.81E-03
59GO:0018026: peptidyl-lysine monomethylation1.81E-03
60GO:2000039: regulation of trichome morphogenesis1.81E-03
61GO:0071497: cellular response to freezing1.81E-03
62GO:0009662: etioplast organization1.81E-03
63GO:1900033: negative regulation of trichome patterning1.81E-03
64GO:1904143: positive regulation of carotenoid biosynthetic process1.81E-03
65GO:0000902: cell morphogenesis2.00E-03
66GO:0000373: Group II intron splicing2.00E-03
67GO:1900865: chloroplast RNA modification2.37E-03
68GO:0006760: folic acid-containing compound metabolic process3.00E-03
69GO:0090708: specification of plant organ axis polarity3.00E-03
70GO:0080117: secondary growth3.00E-03
71GO:0090391: granum assembly3.00E-03
72GO:0006000: fructose metabolic process3.00E-03
73GO:0031145: anaphase-promoting complex-dependent catabolic process3.00E-03
74GO:0001578: microtubule bundle formation3.00E-03
75GO:0009736: cytokinin-activated signaling pathway3.92E-03
76GO:0007275: multicellular organism development4.13E-03
77GO:0030154: cell differentiation4.14E-03
78GO:0009767: photosynthetic electron transport chain4.20E-03
79GO:2000012: regulation of auxin polar transport4.20E-03
80GO:1902476: chloride transmembrane transport4.37E-03
81GO:0010071: root meristem specification4.37E-03
82GO:0007231: osmosensory signaling pathway4.37E-03
83GO:0030071: regulation of mitotic metaphase/anaphase transition4.37E-03
84GO:0051639: actin filament network formation4.37E-03
85GO:0010239: chloroplast mRNA processing4.37E-03
86GO:0009800: cinnamic acid biosynthetic process4.37E-03
87GO:0010306: rhamnogalacturonan II biosynthetic process4.37E-03
88GO:0044211: CTP salvage4.37E-03
89GO:0019048: modulation by virus of host morphology or physiology4.37E-03
90GO:0015696: ammonium transport4.37E-03
91GO:2000904: regulation of starch metabolic process4.37E-03
92GO:0051289: protein homotetramerization4.37E-03
93GO:0031048: chromatin silencing by small RNA4.37E-03
94GO:0043572: plastid fission4.37E-03
95GO:0010027: thylakoid membrane organization4.40E-03
96GO:0009451: RNA modification4.46E-03
97GO:0070588: calcium ion transmembrane transport5.34E-03
98GO:0006357: regulation of transcription from RNA polymerase II promoter5.46E-03
99GO:1901141: regulation of lignin biosynthetic process5.92E-03
100GO:0006479: protein methylation5.92E-03
101GO:0048629: trichome patterning5.92E-03
102GO:0051764: actin crosslink formation5.92E-03
103GO:0051322: anaphase5.92E-03
104GO:0030104: water homeostasis5.92E-03
105GO:0033500: carbohydrate homeostasis5.92E-03
106GO:0072488: ammonium transmembrane transport5.92E-03
107GO:0022622: root system development5.92E-03
108GO:0051567: histone H3-K9 methylation5.92E-03
109GO:0044206: UMP salvage5.92E-03
110GO:0048481: plant ovule development6.19E-03
111GO:0005992: trehalose biosynthetic process6.62E-03
112GO:0009107: lipoate biosynthetic process7.62E-03
113GO:1902183: regulation of shoot apical meristem development7.62E-03
114GO:0016123: xanthophyll biosynthetic process7.62E-03
115GO:0010438: cellular response to sulfur starvation7.62E-03
116GO:0010158: abaxial cell fate specification7.62E-03
117GO:0030308: negative regulation of cell growth7.62E-03
118GO:0010375: stomatal complex patterning7.62E-03
119GO:0010236: plastoquinone biosynthetic process7.62E-03
120GO:0048497: maintenance of floral organ identity7.62E-03
121GO:0006306: DNA methylation8.07E-03
122GO:0016998: cell wall macromolecule catabolic process8.07E-03
123GO:0010405: arabinogalactan protein metabolic process9.47E-03
124GO:0009913: epidermal cell differentiation9.47E-03
125GO:0006655: phosphatidylglycerol biosynthetic process9.47E-03
126GO:1902456: regulation of stomatal opening9.47E-03
127GO:0048831: regulation of shoot system development9.47E-03
128GO:0016554: cytidine to uridine editing9.47E-03
129GO:0010315: auxin efflux9.47E-03
130GO:0006559: L-phenylalanine catabolic process9.47E-03
131GO:0016458: gene silencing9.47E-03
132GO:0006206: pyrimidine nucleobase metabolic process9.47E-03
133GO:0018258: protein O-linked glycosylation via hydroxyproline9.47E-03
134GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.67E-03
135GO:0010082: regulation of root meristem growth9.67E-03
136GO:0006839: mitochondrial transport9.95E-03
137GO:0005975: carbohydrate metabolic process1.01E-02
138GO:2000037: regulation of stomatal complex patterning1.15E-02
139GO:2000067: regulation of root morphogenesis1.15E-02
140GO:0071470: cellular response to osmotic stress1.15E-02
141GO:0042372: phylloquinone biosynthetic process1.15E-02
142GO:0010067: procambium histogenesis1.15E-02
143GO:0009942: longitudinal axis specification1.15E-02
144GO:0048509: regulation of meristem development1.15E-02
145GO:0030488: tRNA methylation1.15E-02
146GO:1901259: chloroplast rRNA processing1.15E-02
147GO:0006468: protein phosphorylation1.17E-02
148GO:0010087: phloem or xylem histogenesis1.24E-02
149GO:0006342: chromatin silencing1.34E-02
150GO:0009741: response to brassinosteroid1.34E-02
151GO:0009958: positive gravitropism1.34E-02
152GO:0010103: stomatal complex morphogenesis1.36E-02
153GO:0032880: regulation of protein localization1.36E-02
154GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.36E-02
155GO:0009610: response to symbiotic fungus1.36E-02
156GO:0006955: immune response1.36E-02
157GO:0048528: post-embryonic root development1.36E-02
158GO:0007050: cell cycle arrest1.36E-02
159GO:0009772: photosynthetic electron transport in photosystem II1.36E-02
160GO:0006821: chloride transport1.36E-02
161GO:0010050: vegetative phase change1.36E-02
162GO:0030307: positive regulation of cell growth1.36E-02
163GO:0009396: folic acid-containing compound biosynthetic process1.36E-02
164GO:0009646: response to absence of light1.44E-02
165GO:0055075: potassium ion homeostasis1.59E-02
166GO:0000105: histidine biosynthetic process1.59E-02
167GO:0010439: regulation of glucosinolate biosynthetic process1.59E-02
168GO:0001522: pseudouridine synthesis1.59E-02
169GO:0009850: auxin metabolic process1.59E-02
170GO:0009787: regulation of abscisic acid-activated signaling pathway1.59E-02
171GO:0032875: regulation of DNA endoreduplication1.59E-02
172GO:0042255: ribosome assembly1.59E-02
173GO:0048766: root hair initiation1.59E-02
174GO:0080156: mitochondrial mRNA modification1.65E-02
175GO:0032502: developmental process1.77E-02
176GO:0010583: response to cyclopentenone1.77E-02
177GO:0006002: fructose 6-phosphate metabolic process1.83E-02
178GO:0009827: plant-type cell wall modification1.83E-02
179GO:0007186: G-protein coupled receptor signaling pathway1.83E-02
180GO:0009739: response to gibberellin1.84E-02
181GO:0071555: cell wall organization1.94E-02
182GO:0009828: plant-type cell wall loosening2.01E-02
183GO:0009051: pentose-phosphate shunt, oxidative branch2.08E-02
184GO:2000024: regulation of leaf development2.08E-02
185GO:0051607: defense response to virus2.27E-02
186GO:0009638: phototropism2.34E-02
187GO:0042761: very long-chain fatty acid biosynthetic process2.34E-02
188GO:2000280: regulation of root development2.34E-02
189GO:0031425: chloroplast RNA processing2.34E-02
190GO:0009751: response to salicylic acid2.55E-02
191GO:0030422: production of siRNA involved in RNA interference2.62E-02
192GO:0048829: root cap development2.62E-02
193GO:0006949: syncytium formation2.62E-02
194GO:0006259: DNA metabolic process2.62E-02
195GO:0031627: telomeric loop formation2.62E-02
196GO:0006535: cysteine biosynthetic process from serine2.62E-02
197GO:0048364: root development2.81E-02
198GO:0010411: xyloglucan metabolic process2.83E-02
199GO:0009742: brassinosteroid mediated signaling pathway2.87E-02
200GO:0010015: root morphogenesis2.90E-02
201GO:0006816: calcium ion transport2.90E-02
202GO:0006265: DNA topological change2.90E-02
203GO:0009773: photosynthetic electron transport in photosystem I2.90E-02
204GO:0009682: induced systemic resistance2.90E-02
205GO:0048229: gametophyte development2.90E-02
206GO:0010582: floral meristem determinacy3.20E-02
207GO:0008361: regulation of cell size3.20E-02
208GO:0016024: CDP-diacylglycerol biosynthetic process3.20E-02
209GO:0045037: protein import into chloroplast stroma3.20E-02
210GO:0010311: lateral root formation3.30E-02
211GO:0006811: ion transport3.46E-02
212GO:0009691: cytokinin biosynthetic process3.51E-02
213GO:0010075: regulation of meristem growth3.51E-02
214GO:0010628: positive regulation of gene expression3.51E-02
215GO:0006006: glucose metabolic process3.51E-02
216GO:0009785: blue light signaling pathway3.51E-02
217GO:0009934: regulation of meristem structural organization3.82E-02
218GO:0010207: photosystem II assembly3.82E-02
219GO:0006541: glutamine metabolic process3.82E-02
220GO:0010020: chloroplast fission3.82E-02
221GO:0010223: secondary shoot formation3.82E-02
222GO:0080188: RNA-directed DNA methylation4.14E-02
223GO:0090351: seedling development4.14E-02
224GO:0034599: cellular response to oxidative stress4.16E-02
225GO:0009790: embryo development4.28E-02
226GO:0006071: glycerol metabolic process4.48E-02
227GO:0006833: water transport4.48E-02
228GO:0019344: cysteine biosynthetic process4.82E-02
229GO:0009944: polarity specification of adaxial/abaxial axis4.82E-02
230GO:0080147: root hair cell development4.82E-02
231GO:0051017: actin filament bundle assembly4.82E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
5GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity2.91E-05
9GO:0001872: (1->3)-beta-D-glucan binding1.89E-04
10GO:0009672: auxin:proton symporter activity2.18E-04
11GO:0010329: auxin efflux transmembrane transporter activity4.78E-04
12GO:0004016: adenylate cyclase activity8.35E-04
13GO:0004400: histidinol-phosphate transaminase activity8.35E-04
14GO:0051777: ent-kaurenoate oxidase activity8.35E-04
15GO:0042834: peptidoglycan binding8.35E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity8.35E-04
17GO:0016274: protein-arginine N-methyltransferase activity8.35E-04
18GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.35E-04
19GO:0004156: dihydropteroate synthase activity8.35E-04
20GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity8.35E-04
21GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity8.35E-04
22GO:0005290: L-histidine transmembrane transporter activity8.35E-04
23GO:0004008: copper-exporting ATPase activity8.35E-04
24GO:0003867: 4-aminobutyrate transaminase activity8.35E-04
25GO:0004071: aspartate-ammonia ligase activity8.35E-04
26GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity8.35E-04
27GO:0004830: tryptophan-tRNA ligase activity8.35E-04
28GO:0052381: tRNA dimethylallyltransferase activity8.35E-04
29GO:0004519: endonuclease activity1.15E-03
30GO:0004650: polygalacturonase activity1.37E-03
31GO:0017118: lipoyltransferase activity1.81E-03
32GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.81E-03
33GO:0016415: octanoyltransferase activity1.81E-03
34GO:0102083: 7,8-dihydromonapterin aldolase activity1.81E-03
35GO:0004150: dihydroneopterin aldolase activity1.81E-03
36GO:0008805: carbon-monoxide oxygenase activity1.81E-03
37GO:0008493: tetracycline transporter activity1.81E-03
38GO:0000064: L-ornithine transmembrane transporter activity1.81E-03
39GO:0015929: hexosaminidase activity1.81E-03
40GO:0004563: beta-N-acetylhexosaminidase activity1.81E-03
41GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.81E-03
42GO:0009884: cytokinin receptor activity1.81E-03
43GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.86E-03
44GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.36E-03
45GO:0004805: trehalose-phosphatase activity2.77E-03
46GO:0005034: osmosensor activity3.00E-03
47GO:0070330: aromatase activity3.00E-03
48GO:0017150: tRNA dihydrouridine synthase activity3.00E-03
49GO:0045548: phenylalanine ammonia-lyase activity3.00E-03
50GO:0016805: dipeptidase activity3.00E-03
51GO:0000156: phosphorelay response regulator activity3.23E-03
52GO:0003723: RNA binding3.42E-03
53GO:0005262: calcium channel activity4.20E-03
54GO:0004674: protein serine/threonine kinase activity4.36E-03
55GO:0015189: L-lysine transmembrane transporter activity4.37E-03
56GO:0015181: arginine transmembrane transporter activity4.37E-03
57GO:0035197: siRNA binding4.37E-03
58GO:0004930: G-protein coupled receptor activity5.92E-03
59GO:0004659: prenyltransferase activity5.92E-03
60GO:0016279: protein-lysine N-methyltransferase activity5.92E-03
61GO:0004845: uracil phosphoribosyltransferase activity5.92E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity5.92E-03
63GO:0005253: anion channel activity5.92E-03
64GO:0019199: transmembrane receptor protein kinase activity5.92E-03
65GO:0046556: alpha-L-arabinofuranosidase activity5.92E-03
66GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.22E-03
67GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.62E-03
68GO:0008725: DNA-3-methyladenine glycosylase activity7.62E-03
69GO:0004523: RNA-DNA hybrid ribonuclease activity7.62E-03
70GO:0018685: alkane 1-monooxygenase activity7.62E-03
71GO:0016773: phosphotransferase activity, alcohol group as acceptor7.62E-03
72GO:0008519: ammonium transmembrane transporter activity9.47E-03
73GO:0005247: voltage-gated chloride channel activity9.47E-03
74GO:2001070: starch binding9.47E-03
75GO:0004605: phosphatidate cytidylyltransferase activity9.47E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity9.47E-03
77GO:0016829: lyase activity1.07E-02
78GO:0019900: kinase binding1.15E-02
79GO:0004124: cysteine synthase activity1.15E-02
80GO:0008195: phosphatidate phosphatase activity1.15E-02
81GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.15E-02
82GO:0004849: uridine kinase activity1.15E-02
83GO:0016832: aldehyde-lyase activity1.15E-02
84GO:0004656: procollagen-proline 4-dioxygenase activity1.15E-02
85GO:0043621: protein self-association1.29E-02
86GO:0001085: RNA polymerase II transcription factor binding1.34E-02
87GO:0019899: enzyme binding1.36E-02
88GO:0016762: xyloglucan:xyloglucosyl transferase activity1.65E-02
89GO:0004518: nuclease activity1.77E-02
90GO:0008173: RNA methyltransferase activity1.83E-02
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.83E-02
92GO:0005375: copper ion transmembrane transporter activity1.83E-02
93GO:0008889: glycerophosphodiester phosphodiesterase activity2.08E-02
94GO:0016301: kinase activity2.33E-02
95GO:0004673: protein histidine kinase activity2.62E-02
96GO:0030247: polysaccharide binding2.83E-02
97GO:0016798: hydrolase activity, acting on glycosyl bonds2.83E-02
98GO:0005089: Rho guanyl-nucleotide exchange factor activity2.90E-02
99GO:0003691: double-stranded telomeric DNA binding2.90E-02
100GO:0008327: methyl-CpG binding2.90E-02
101GO:0016788: hydrolase activity, acting on ester bonds3.06E-02
102GO:0004521: endoribonuclease activity3.20E-02
103GO:0004089: carbonate dehydratase activity3.51E-02
104GO:0031072: heat shock protein binding3.51E-02
105GO:0000155: phosphorelay sensor kinase activity3.51E-02
106GO:0009982: pseudouridine synthase activity3.51E-02
107GO:0003725: double-stranded RNA binding3.51E-02
108GO:0004022: alcohol dehydrogenase (NAD) activity3.51E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.51E-02
110GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.63E-02
111GO:0008083: growth factor activity3.82E-02
112GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.82E-02
113GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.98E-02
114GO:0005217: intracellular ligand-gated ion channel activity4.14E-02
115GO:0004970: ionotropic glutamate receptor activity4.14E-02
116GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.15E-02
117GO:0015144: carbohydrate transmembrane transporter activity4.41E-02
118GO:0044212: transcription regulatory region DNA binding4.41E-02
119GO:0004672: protein kinase activity4.49E-02
120GO:0052689: carboxylic ester hydrolase activity4.70E-02
121GO:0031418: L-ascorbic acid binding4.82E-02
122GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.82E-02
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Gene type



Gene DE type