Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032491: detection of molecule of fungal origin0.00E+00
2GO:0032499: detection of peptidoglycan0.00E+00
3GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
4GO:0006654: phosphatidic acid biosynthetic process0.00E+00
5GO:0010647: positive regulation of cell communication0.00E+00
6GO:1902001: fatty acid transmembrane transport0.00E+00
7GO:0006216: cytidine catabolic process0.00E+00
8GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
9GO:0033198: response to ATP0.00E+00
10GO:0046109: uridine biosynthetic process0.00E+00
11GO:0009312: oligosaccharide biosynthetic process0.00E+00
12GO:0002764: immune response-regulating signaling pathway0.00E+00
13GO:0046680: response to DDT0.00E+00
14GO:0006983: ER overload response0.00E+00
15GO:0006952: defense response4.59E-05
16GO:0046513: ceramide biosynthetic process6.40E-05
17GO:0002238: response to molecule of fungal origin2.46E-04
18GO:0010045: response to nickel cation4.40E-04
19GO:0042759: long-chain fatty acid biosynthetic process4.40E-04
20GO:0042350: GDP-L-fucose biosynthetic process4.40E-04
21GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.40E-04
22GO:0033306: phytol metabolic process4.40E-04
23GO:1902265: abscisic acid homeostasis4.40E-04
24GO:0000032: cell wall mannoprotein biosynthetic process4.40E-04
25GO:0010204: defense response signaling pathway, resistance gene-independent6.48E-04
26GO:0006486: protein glycosylation8.83E-04
27GO:1900426: positive regulation of defense response to bacterium9.15E-04
28GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine9.50E-04
29GO:0010541: acropetal auxin transport9.50E-04
30GO:0051258: protein polymerization9.50E-04
31GO:0060919: auxin influx9.50E-04
32GO:0071668: plant-type cell wall assembly9.50E-04
33GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.50E-04
34GO:0080181: lateral root branching9.50E-04
35GO:0055088: lipid homeostasis9.50E-04
36GO:0010115: regulation of abscisic acid biosynthetic process9.50E-04
37GO:0015908: fatty acid transport9.50E-04
38GO:0043066: negative regulation of apoptotic process9.50E-04
39GO:0002240: response to molecule of oomycetes origin9.50E-04
40GO:0010042: response to manganese ion9.50E-04
41GO:0031349: positive regulation of defense response9.50E-04
42GO:0010271: regulation of chlorophyll catabolic process9.50E-04
43GO:0000266: mitochondrial fission1.40E-03
44GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.55E-03
45GO:0033591: response to L-ascorbic acid1.55E-03
46GO:0015695: organic cation transport1.55E-03
47GO:1900055: regulation of leaf senescence1.55E-03
48GO:0010498: proteasomal protein catabolic process1.55E-03
49GO:0016045: detection of bacterium1.55E-03
50GO:0010359: regulation of anion channel activity1.55E-03
51GO:0002230: positive regulation of defense response to virus by host1.55E-03
52GO:0007165: signal transduction1.61E-03
53GO:0034605: cellular response to heat1.80E-03
54GO:0002237: response to molecule of bacterial origin1.80E-03
55GO:0010043: response to zinc ion2.14E-03
56GO:0007568: aging2.14E-03
57GO:0071323: cellular response to chitin2.24E-03
58GO:1902290: positive regulation of defense response to oomycetes2.24E-03
59GO:0009298: GDP-mannose biosynthetic process2.24E-03
60GO:0009052: pentose-phosphate shunt, non-oxidative branch2.24E-03
61GO:0030100: regulation of endocytosis2.24E-03
62GO:0009226: nucleotide-sugar biosynthetic process2.24E-03
63GO:0015696: ammonium transport2.24E-03
64GO:0016192: vesicle-mediated transport2.62E-03
65GO:0009687: abscisic acid metabolic process3.01E-03
66GO:0045227: capsule polysaccharide biosynthetic process3.01E-03
67GO:0006085: acetyl-CoA biosynthetic process3.01E-03
68GO:0045088: regulation of innate immune response3.01E-03
69GO:0072488: ammonium transmembrane transport3.01E-03
70GO:0033358: UDP-L-arabinose biosynthetic process3.01E-03
71GO:0071219: cellular response to molecule of bacterial origin3.01E-03
72GO:0033356: UDP-L-arabinose metabolic process3.01E-03
73GO:0015031: protein transport3.40E-03
74GO:0006886: intracellular protein transport3.48E-03
75GO:0009229: thiamine diphosphate biosynthetic process3.85E-03
76GO:0016094: polyprenol biosynthetic process3.85E-03
77GO:0006465: signal peptide processing3.85E-03
78GO:0000304: response to singlet oxygen3.85E-03
79GO:0098719: sodium ion import across plasma membrane3.85E-03
80GO:0042391: regulation of membrane potential4.60E-03
81GO:0018258: protein O-linked glycosylation via hydroxyproline4.77E-03
82GO:0009228: thiamine biosynthetic process4.77E-03
83GO:0006014: D-ribose metabolic process4.77E-03
84GO:0009972: cytidine deamination4.77E-03
85GO:0010405: arabinogalactan protein metabolic process4.77E-03
86GO:0010315: auxin efflux4.77E-03
87GO:0033365: protein localization to organelle4.77E-03
88GO:0010337: regulation of salicylic acid metabolic process4.77E-03
89GO:0006814: sodium ion transport5.34E-03
90GO:0048509: regulation of meristem development5.75E-03
91GO:0080036: regulation of cytokinin-activated signaling pathway5.75E-03
92GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.75E-03
93GO:0010038: response to metal ion6.80E-03
94GO:0046470: phosphatidylcholine metabolic process6.80E-03
95GO:0071446: cellular response to salicylic acid stimulus6.80E-03
96GO:1900056: negative regulation of leaf senescence6.80E-03
97GO:0015937: coenzyme A biosynthetic process6.80E-03
98GO:1900057: positive regulation of leaf senescence6.80E-03
99GO:0009620: response to fungus6.81E-03
100GO:0016559: peroxisome fission7.91E-03
101GO:0009787: regulation of abscisic acid-activated signaling pathway7.91E-03
102GO:0009819: drought recovery7.91E-03
103GO:0009850: auxin metabolic process7.91E-03
104GO:0043068: positive regulation of programmed cell death7.91E-03
105GO:1900150: regulation of defense response to fungus7.91E-03
106GO:0006997: nucleus organization9.09E-03
107GO:0010208: pollen wall assembly9.09E-03
108GO:0006367: transcription initiation from RNA polymerase II promoter9.09E-03
109GO:0010497: plasmodesmata-mediated intercellular transport9.09E-03
110GO:0009816: defense response to bacterium, incompatible interaction9.42E-03
111GO:0010112: regulation of systemic acquired resistance1.03E-02
112GO:0009060: aerobic respiration1.03E-02
113GO:0080144: amino acid homeostasis1.03E-02
114GO:0019432: triglyceride biosynthetic process1.03E-02
115GO:0016567: protein ubiquitination1.10E-02
116GO:0051453: regulation of intracellular pH1.16E-02
117GO:0048354: mucilage biosynthetic process involved in seed coat development1.16E-02
118GO:0010380: regulation of chlorophyll biosynthetic process1.16E-02
119GO:0009817: defense response to fungus, incompatible interaction1.17E-02
120GO:0030244: cellulose biosynthetic process1.17E-02
121GO:0006499: N-terminal protein myristoylation1.29E-02
122GO:0043069: negative regulation of programmed cell death1.30E-02
123GO:0010215: cellulose microfibril organization1.30E-02
124GO:0030148: sphingolipid biosynthetic process1.44E-02
125GO:0000038: very long-chain fatty acid metabolic process1.44E-02
126GO:0009682: induced systemic resistance1.44E-02
127GO:0043085: positive regulation of catalytic activity1.44E-02
128GO:0016051: carbohydrate biosynthetic process1.48E-02
129GO:0010150: leaf senescence1.54E-02
130GO:0045037: protein import into chloroplast stroma1.58E-02
131GO:0006790: sulfur compound metabolic process1.58E-02
132GO:0016042: lipid catabolic process1.62E-02
133GO:0006006: glucose metabolic process1.73E-02
134GO:0055046: microgametogenesis1.73E-02
135GO:0010102: lateral root morphogenesis1.73E-02
136GO:0006470: protein dephosphorylation1.82E-02
137GO:0010540: basipetal auxin transport1.89E-02
138GO:0007034: vacuolar transport1.89E-02
139GO:0051707: response to other organism1.91E-02
140GO:0000209: protein polyubiquitination1.99E-02
141GO:0010030: positive regulation of seed germination2.05E-02
142GO:0070588: calcium ion transmembrane transport2.05E-02
143GO:0046854: phosphatidylinositol phosphorylation2.05E-02
144GO:0010053: root epidermal cell differentiation2.05E-02
145GO:0009225: nucleotide-sugar metabolic process2.05E-02
146GO:0010167: response to nitrate2.05E-02
147GO:0019853: L-ascorbic acid biosynthetic process2.05E-02
148GO:0034976: response to endoplasmic reticulum stress2.21E-02
149GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.32E-02
150GO:2000377: regulation of reactive oxygen species metabolic process2.38E-02
151GO:0009863: salicylic acid mediated signaling pathway2.38E-02
152GO:0050832: defense response to fungus2.42E-02
153GO:0010073: meristem maintenance2.55E-02
154GO:0009809: lignin biosynthetic process2.58E-02
155GO:0007005: mitochondrion organization2.91E-02
156GO:0071456: cellular response to hypoxia2.91E-02
157GO:0030245: cellulose catabolic process2.91E-02
158GO:0009814: defense response, incompatible interaction2.91E-02
159GO:0006096: glycolytic process3.05E-02
160GO:0006012: galactose metabolic process3.10E-02
161GO:0009626: plant-type hypersensitive response3.25E-02
162GO:0010584: pollen exine formation3.29E-02
163GO:0006284: base-excision repair3.29E-02
164GO:0009561: megagametogenesis3.29E-02
165GO:0070417: cellular response to cold3.48E-02
166GO:0010200: response to chitin3.64E-02
167GO:0080022: primary root development3.68E-02
168GO:0008033: tRNA processing3.68E-02
169GO:0000413: protein peptidyl-prolyl isomerization3.68E-02
170GO:0006662: glycerol ether metabolic process3.88E-02
171GO:0071472: cellular response to salt stress3.88E-02
172GO:0009414: response to water deprivation4.08E-02
173GO:0048544: recognition of pollen4.09E-02
174GO:0009646: response to absence of light4.09E-02
175GO:0042742: defense response to bacterium4.24E-02
176GO:0019252: starch biosynthetic process4.30E-02
177GO:0006979: response to oxidative stress4.30E-02
178GO:0009749: response to glucose4.30E-02
179GO:0045454: cell redox homeostasis4.35E-02
180GO:0010193: response to ozone4.51E-02
181GO:0009630: gravitropism4.73E-02
182GO:0007264: small GTPase mediated signal transduction4.73E-02
183GO:0030163: protein catabolic process4.94E-02
RankGO TermAdjusted P value
1GO:0005212: structural constituent of eye lens0.00E+00
2GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
3GO:2001080: chitosan binding0.00E+00
4GO:0034338: short-chain carboxylesterase activity0.00E+00
5GO:1990482: sphingolipid alpha-glucuronosyltransferase activity0.00E+00
6GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
7GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
8GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
9GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
10GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
11GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
12GO:0047844: deoxycytidine deaminase activity0.00E+00
13GO:0050334: thiaminase activity0.00E+00
14GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
15GO:0008320: protein transmembrane transporter activity1.37E-05
16GO:0019199: transmembrane receptor protein kinase activity1.12E-04
17GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.73E-04
18GO:0015245: fatty acid transporter activity4.40E-04
19GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.40E-04
20GO:0004649: poly(ADP-ribose) glycohydrolase activity4.40E-04
21GO:0050577: GDP-L-fucose synthase activity4.40E-04
22GO:0004476: mannose-6-phosphate isomerase activity4.40E-04
23GO:0019707: protein-cysteine S-acyltransferase activity4.40E-04
24GO:0004630: phospholipase D activity6.48E-04
25GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity6.48E-04
26GO:0050291: sphingosine N-acyltransferase activity9.50E-04
27GO:0004809: tRNA (guanine-N2-)-methyltransferase activity9.50E-04
28GO:0004594: pantothenate kinase activity9.50E-04
29GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity9.50E-04
30GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity9.50E-04
31GO:0045140: inositol phosphoceramide synthase activity9.50E-04
32GO:0008171: O-methyltransferase activity1.06E-03
33GO:0015020: glucuronosyltransferase activity1.06E-03
34GO:0016301: kinase activity1.27E-03
35GO:0004751: ribose-5-phosphate isomerase activity1.55E-03
36GO:0016595: glutamate binding1.55E-03
37GO:0000030: mannosyltransferase activity1.55E-03
38GO:0016174: NAD(P)H oxidase activity1.55E-03
39GO:0042409: caffeoyl-CoA O-methyltransferase activity1.55E-03
40GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.55E-03
41GO:0004806: triglyceride lipase activity1.56E-03
42GO:0030552: cAMP binding2.02E-03
43GO:0030553: cGMP binding2.02E-03
44GO:0010178: IAA-amino acid conjugate hydrolase activity2.24E-03
45GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.24E-03
46GO:0035529: NADH pyrophosphatase activity2.24E-03
47GO:0005216: ion channel activity2.75E-03
48GO:0050373: UDP-arabinose 4-epimerase activity3.01E-03
49GO:0001075: transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly3.01E-03
50GO:0010328: auxin influx transmembrane transporter activity3.01E-03
51GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.12E-03
52GO:0005496: steroid binding3.85E-03
53GO:0047631: ADP-ribose diphosphatase activity3.85E-03
54GO:0008725: DNA-3-methyladenine glycosylase activity3.85E-03
55GO:0010294: abscisic acid glucosyltransferase activity3.85E-03
56GO:0002094: polyprenyltransferase activity3.85E-03
57GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.85E-03
58GO:0004623: phospholipase A2 activity3.85E-03
59GO:0008194: UDP-glycosyltransferase activity4.13E-03
60GO:0005249: voltage-gated potassium channel activity4.60E-03
61GO:0030551: cyclic nucleotide binding4.60E-03
62GO:0008519: ammonium transmembrane transporter activity4.77E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity4.77E-03
64GO:0047714: galactolipase activity4.77E-03
65GO:0000210: NAD+ diphosphatase activity4.77E-03
66GO:0004144: diacylglycerol O-acyltransferase activity5.75E-03
67GO:0009927: histidine phosphotransfer kinase activity5.75E-03
68GO:0003978: UDP-glucose 4-epimerase activity5.75E-03
69GO:0051920: peroxiredoxin activity5.75E-03
70GO:0004126: cytidine deaminase activity5.75E-03
71GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.75E-03
72GO:0004747: ribokinase activity5.75E-03
73GO:0080043: quercetin 3-O-glucosyltransferase activity6.81E-03
74GO:0080044: quercetin 7-O-glucosyltransferase activity6.81E-03
75GO:0008865: fructokinase activity7.91E-03
76GO:0015491: cation:cation antiporter activity7.91E-03
77GO:0004708: MAP kinase kinase activity7.91E-03
78GO:0004714: transmembrane receptor protein tyrosine kinase activity7.91E-03
79GO:0016209: antioxidant activity7.91E-03
80GO:0008970: phosphatidylcholine 1-acylhydrolase activity9.09E-03
81GO:0016758: transferase activity, transferring hexosyl groups9.85E-03
82GO:0008375: acetylglucosaminyltransferase activity9.96E-03
83GO:0004842: ubiquitin-protein transferase activity1.12E-02
84GO:0030955: potassium ion binding1.16E-02
85GO:0004743: pyruvate kinase activity1.16E-02
86GO:0008047: enzyme activator activity1.30E-02
87GO:0004722: protein serine/threonine phosphatase activity1.42E-02
88GO:0008559: xenobiotic-transporting ATPase activity1.44E-02
89GO:0015386: potassium:proton antiporter activity1.44E-02
90GO:0015198: oligopeptide transporter activity1.58E-02
91GO:0008378: galactosyltransferase activity1.58E-02
92GO:0000049: tRNA binding1.58E-02
93GO:0050661: NADP binding1.69E-02
94GO:0005388: calcium-transporting ATPase activity1.73E-02
95GO:0008081: phosphoric diester hydrolase activity1.73E-02
96GO:0010329: auxin efflux transmembrane transporter activity1.73E-02
97GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.73E-02
98GO:0004190: aspartic-type endopeptidase activity2.05E-02
99GO:0008061: chitin binding2.05E-02
100GO:0051287: NAD binding2.32E-02
101GO:0003954: NADH dehydrogenase activity2.38E-02
102GO:0008134: transcription factor binding2.38E-02
103GO:0043424: protein histidine kinase binding2.55E-02
104GO:0004601: peroxidase activity2.67E-02
105GO:0019706: protein-cysteine S-palmitoyltransferase activity2.73E-02
106GO:0008408: 3'-5' exonuclease activity2.73E-02
107GO:0008810: cellulase activity3.10E-02
108GO:0016887: ATPase activity3.24E-02
109GO:0003756: protein disulfide isomerase activity3.29E-02
110GO:0004499: N,N-dimethylaniline monooxygenase activity3.29E-02
111GO:0047134: protein-disulfide reductase activity3.48E-02
112GO:0005102: receptor binding3.48E-02
113GO:0004527: exonuclease activity3.88E-02
114GO:0003713: transcription coactivator activity3.88E-02
115GO:0004791: thioredoxin-disulfide reductase activity4.09E-02
116GO:0016853: isomerase activity4.09E-02
117GO:0050662: coenzyme binding4.09E-02
118GO:0019901: protein kinase binding4.30E-02
119GO:0042803: protein homodimerization activity4.60E-02
120GO:0004871: signal transducer activity4.60E-02
121GO:0004197: cysteine-type endopeptidase activity4.73E-02
122GO:0003824: catalytic activity4.93E-02
123GO:0015385: sodium:proton antiporter activity4.94E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.94E-02
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Gene type



Gene DE type