GO Enrichment Analysis of Co-expressed Genes with
AT3G59480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 2 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 3 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 4 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 5 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 6 | GO:0080127: fruit septum development | 0.00E+00 |
| 7 | GO:0006364: rRNA processing | 1.80E-06 |
| 8 | GO:0009913: epidermal cell differentiation | 3.20E-05 |
| 9 | GO:0006401: RNA catabolic process | 6.07E-05 |
| 10 | GO:0046620: regulation of organ growth | 7.88E-05 |
| 11 | GO:0009828: plant-type cell wall loosening | 8.96E-05 |
| 12 | GO:0010063: positive regulation of trichoblast fate specification | 1.23E-04 |
| 13 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 1.23E-04 |
| 14 | GO:1900865: chloroplast RNA modification | 1.48E-04 |
| 15 | GO:0006949: syncytium formation | 1.75E-04 |
| 16 | GO:0009662: etioplast organization | 2.86E-04 |
| 17 | GO:0080009: mRNA methylation | 2.86E-04 |
| 18 | GO:0010541: acropetal auxin transport | 2.86E-04 |
| 19 | GO:0009658: chloroplast organization | 4.18E-04 |
| 20 | GO:0009664: plant-type cell wall organization | 4.47E-04 |
| 21 | GO:0006518: peptide metabolic process | 4.72E-04 |
| 22 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.14E-04 |
| 23 | GO:0048367: shoot system development | 6.30E-04 |
| 24 | GO:0010371: regulation of gibberellin biosynthetic process | 6.76E-04 |
| 25 | GO:0010071: root meristem specification | 6.76E-04 |
| 26 | GO:0010306: rhamnogalacturonan II biosynthetic process | 6.76E-04 |
| 27 | GO:0010305: leaf vascular tissue pattern formation | 8.35E-04 |
| 28 | GO:0006479: protein methylation | 8.97E-04 |
| 29 | GO:1900864: mitochondrial RNA modification | 8.97E-04 |
| 30 | GO:0006221: pyrimidine nucleotide biosynthetic process | 8.97E-04 |
| 31 | GO:0048825: cotyledon development | 9.56E-04 |
| 32 | GO:0080156: mitochondrial mRNA modification | 1.02E-03 |
| 33 | GO:0048497: maintenance of floral organ identity | 1.13E-03 |
| 34 | GO:0016123: xanthophyll biosynthetic process | 1.13E-03 |
| 35 | GO:0016120: carotene biosynthetic process | 1.13E-03 |
| 36 | GO:0080110: sporopollenin biosynthetic process | 1.13E-03 |
| 37 | GO:0016554: cytidine to uridine editing | 1.39E-03 |
| 38 | GO:0046855: inositol phosphate dephosphorylation | 1.39E-03 |
| 39 | GO:0060918: auxin transport | 1.39E-03 |
| 40 | GO:0042793: transcription from plastid promoter | 1.39E-03 |
| 41 | GO:0003006: developmental process involved in reproduction | 1.39E-03 |
| 42 | GO:1901259: chloroplast rRNA processing | 1.66E-03 |
| 43 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.66E-03 |
| 44 | GO:0009942: longitudinal axis specification | 1.66E-03 |
| 45 | GO:0009734: auxin-activated signaling pathway | 1.75E-03 |
| 46 | GO:0048437: floral organ development | 1.95E-03 |
| 47 | GO:0015937: coenzyme A biosynthetic process | 1.95E-03 |
| 48 | GO:0034968: histone lysine methylation | 2.26E-03 |
| 49 | GO:0009642: response to light intensity | 2.26E-03 |
| 50 | GO:0042255: ribosome assembly | 2.26E-03 |
| 51 | GO:0006353: DNA-templated transcription, termination | 2.26E-03 |
| 52 | GO:0006402: mRNA catabolic process | 2.26E-03 |
| 53 | GO:0009826: unidimensional cell growth | 2.48E-03 |
| 54 | GO:0032544: plastid translation | 2.58E-03 |
| 55 | GO:0019430: removal of superoxide radicals | 2.58E-03 |
| 56 | GO:0000902: cell morphogenesis | 2.91E-03 |
| 57 | GO:0048507: meristem development | 2.91E-03 |
| 58 | GO:0031425: chloroplast RNA processing | 3.26E-03 |
| 59 | GO:0048829: root cap development | 3.62E-03 |
| 60 | GO:0016441: posttranscriptional gene silencing | 3.62E-03 |
| 61 | GO:0009750: response to fructose | 4.00E-03 |
| 62 | GO:0046856: phosphatidylinositol dephosphorylation | 4.00E-03 |
| 63 | GO:0010582: floral meristem determinacy | 4.39E-03 |
| 64 | GO:0010588: cotyledon vascular tissue pattern formation | 4.79E-03 |
| 65 | GO:0010540: basipetal auxin transport | 5.20E-03 |
| 66 | GO:0048467: gynoecium development | 5.20E-03 |
| 67 | GO:0080188: RNA-directed DNA methylation | 5.63E-03 |
| 68 | GO:0080147: root hair cell development | 6.51E-03 |
| 69 | GO:0019953: sexual reproduction | 6.98E-03 |
| 70 | GO:0003333: amino acid transmembrane transport | 7.45E-03 |
| 71 | GO:0010431: seed maturation | 7.45E-03 |
| 72 | GO:0009845: seed germination | 7.90E-03 |
| 73 | GO:0010584: pollen exine formation | 8.93E-03 |
| 74 | GO:0042127: regulation of cell proliferation | 8.93E-03 |
| 75 | GO:0040008: regulation of growth | 9.62E-03 |
| 76 | GO:0080022: primary root development | 9.99E-03 |
| 77 | GO:0008033: tRNA processing | 9.99E-03 |
| 78 | GO:0010087: phloem or xylem histogenesis | 9.99E-03 |
| 79 | GO:0048868: pollen tube development | 1.05E-02 |
| 80 | GO:0007018: microtubule-based movement | 1.11E-02 |
| 81 | GO:0009851: auxin biosynthetic process | 1.16E-02 |
| 82 | GO:0009749: response to glucose | 1.16E-02 |
| 83 | GO:0010583: response to cyclopentenone | 1.28E-02 |
| 84 | GO:0015995: chlorophyll biosynthetic process | 1.78E-02 |
| 85 | GO:0016311: dephosphorylation | 1.85E-02 |
| 86 | GO:0048481: plant ovule development | 1.91E-02 |
| 87 | GO:0007275: multicellular organism development | 2.01E-02 |
| 88 | GO:0006811: ion transport | 2.05E-02 |
| 89 | GO:0006865: amino acid transport | 2.19E-02 |
| 90 | GO:0009793: embryo development ending in seed dormancy | 2.55E-02 |
| 91 | GO:0009926: auxin polar transport | 2.71E-02 |
| 92 | GO:0009744: response to sucrose | 2.71E-02 |
| 93 | GO:0006355: regulation of transcription, DNA-templated | 2.76E-02 |
| 94 | GO:0006397: mRNA processing | 2.99E-02 |
| 95 | GO:0009733: response to auxin | 3.26E-02 |
| 96 | GO:0009736: cytokinin-activated signaling pathway | 3.35E-02 |
| 97 | GO:0006417: regulation of translation | 3.60E-02 |
| 98 | GO:0048316: seed development | 3.86E-02 |
| 99 | GO:0009409: response to cold | 4.10E-02 |
| 100 | GO:0016569: covalent chromatin modification | 4.13E-02 |
| 101 | GO:0009740: gibberellic acid mediated signaling pathway | 4.13E-02 |
| 102 | GO:0006396: RNA processing | 4.40E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 4 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.23E-04 |
| 5 | GO:0004632: phosphopantothenate--cysteine ligase activity | 1.23E-04 |
| 6 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 1.23E-04 |
| 7 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.23E-04 |
| 8 | GO:0016274: protein-arginine N-methyltransferase activity | 1.23E-04 |
| 9 | GO:0000175: 3'-5'-exoribonuclease activity | 2.71E-04 |
| 10 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 2.86E-04 |
| 11 | GO:0003723: RNA binding | 3.42E-04 |
| 12 | GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity | 6.76E-04 |
| 13 | GO:0009041: uridylate kinase activity | 6.76E-04 |
| 14 | GO:0010328: auxin influx transmembrane transporter activity | 8.97E-04 |
| 15 | GO:0004519: endonuclease activity | 1.18E-03 |
| 16 | GO:0003968: RNA-directed 5'-3' RNA polymerase activity | 1.39E-03 |
| 17 | GO:0004784: superoxide dismutase activity | 1.39E-03 |
| 18 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.39E-03 |
| 19 | GO:0008173: RNA methyltransferase activity | 2.58E-03 |
| 20 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 4.39E-03 |
| 21 | GO:0019843: rRNA binding | 7.30E-03 |
| 22 | GO:0004540: ribonuclease activity | 7.45E-03 |
| 23 | GO:0030570: pectate lyase activity | 8.43E-03 |
| 24 | GO:0003727: single-stranded RNA binding | 8.93E-03 |
| 25 | GO:0018024: histone-lysine N-methyltransferase activity | 9.45E-03 |
| 26 | GO:0050662: coenzyme binding | 1.11E-02 |
| 27 | GO:0005200: structural constituent of cytoskeleton | 1.46E-02 |
| 28 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.46E-02 |
| 29 | GO:0004222: metalloendopeptidase activity | 2.05E-02 |
| 30 | GO:0003677: DNA binding | 2.41E-02 |
| 31 | GO:0043621: protein self-association | 2.87E-02 |
| 32 | GO:0015293: symporter activity | 2.95E-02 |
| 33 | GO:0043565: sequence-specific DNA binding | 2.98E-02 |
| 34 | GO:0003690: double-stranded DNA binding | 3.44E-02 |
| 35 | GO:0003777: microtubule motor activity | 3.60E-02 |
| 36 | GO:0015171: amino acid transmembrane transporter activity | 3.60E-02 |
| 37 | GO:0008289: lipid binding | 3.98E-02 |
| 38 | GO:0004650: polygalacturonase activity | 4.04E-02 |
| 39 | GO:0022857: transmembrane transporter activity | 4.13E-02 |
| 40 | GO:0003779: actin binding | 4.22E-02 |
| 41 | GO:0016887: ATPase activity | 4.43E-02 |
| 42 | GO:0008026: ATP-dependent helicase activity | 4.49E-02 |