Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
2GO:0009606: tropism0.00E+00
3GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:1903224: regulation of endodermal cell differentiation0.00E+00
6GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:0097164: ammonium ion metabolic process0.00E+00
10GO:0045184: establishment of protein localization0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0070979: protein K11-linked ubiquitination0.00E+00
15GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
16GO:0009734: auxin-activated signaling pathway1.43E-11
17GO:0046620: regulation of organ growth2.13E-10
18GO:0009733: response to auxin5.54E-08
19GO:0040008: regulation of growth2.96E-07
20GO:0009658: chloroplast organization2.75E-06
21GO:0009926: auxin polar transport4.77E-06
22GO:0006760: folic acid-containing compound metabolic process7.44E-05
23GO:0000373: Group II intron splicing1.29E-04
24GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.37E-04
25GO:0046656: folic acid biosynthetic process2.59E-04
26GO:0009742: brassinosteroid mediated signaling pathway2.80E-04
27GO:0032502: developmental process3.55E-04
28GO:0007275: multicellular organism development3.87E-04
29GO:0042793: transcription from plastid promoter5.40E-04
30GO:0046654: tetrahydrofolate biosynthetic process7.14E-04
31GO:2000067: regulation of root morphogenesis7.14E-04
32GO:0042659: regulation of cell fate specification7.37E-04
33GO:0070509: calcium ion import7.37E-04
34GO:0043266: regulation of potassium ion transport7.37E-04
35GO:0010063: positive regulation of trichoblast fate specification7.37E-04
36GO:0090558: plant epidermis development7.37E-04
37GO:0010480: microsporocyte differentiation7.37E-04
38GO:2000021: regulation of ion homeostasis7.37E-04
39GO:0035987: endodermal cell differentiation7.37E-04
40GO:0043609: regulation of carbon utilization7.37E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation7.37E-04
42GO:0000066: mitochondrial ornithine transport7.37E-04
43GO:0050801: ion homeostasis7.37E-04
44GO:0034757: negative regulation of iron ion transport7.37E-04
45GO:0048437: floral organ development9.10E-04
46GO:0000160: phosphorelay signal transduction system9.37E-04
47GO:0042255: ribosome assembly1.13E-03
48GO:0009657: plastid organization1.38E-03
49GO:0007389: pattern specification process1.38E-03
50GO:0006002: fructose 6-phosphate metabolic process1.38E-03
51GO:0070981: L-asparagine biosynthetic process1.59E-03
52GO:0010271: regulation of chlorophyll catabolic process1.59E-03
53GO:0060359: response to ammonium ion1.59E-03
54GO:1902326: positive regulation of chlorophyll biosynthetic process1.59E-03
55GO:0018026: peptidyl-lysine monomethylation1.59E-03
56GO:0010569: regulation of double-strand break repair via homologous recombination1.59E-03
57GO:0071497: cellular response to freezing1.59E-03
58GO:0042325: regulation of phosphorylation1.59E-03
59GO:1904143: positive regulation of carotenoid biosynthetic process1.59E-03
60GO:0006529: asparagine biosynthetic process1.59E-03
61GO:2000123: positive regulation of stomatal complex development1.59E-03
62GO:0000902: cell morphogenesis1.65E-03
63GO:0071555: cell wall organization1.92E-03
64GO:0042761: very long-chain fatty acid biosynthetic process1.96E-03
65GO:0006949: syncytium formation2.29E-03
66GO:0009416: response to light stimulus2.37E-03
67GO:0006954: inflammatory response2.63E-03
68GO:0051127: positive regulation of actin nucleation2.63E-03
69GO:0090708: specification of plant organ axis polarity2.63E-03
70GO:0031145: anaphase-promoting complex-dependent catabolic process2.63E-03
71GO:0006000: fructose metabolic process2.63E-03
72GO:0001578: microtubule bundle formation2.63E-03
73GO:0043157: response to cation stress2.63E-03
74GO:0071398: cellular response to fatty acid2.63E-03
75GO:0010447: response to acidic pH2.63E-03
76GO:0080117: secondary growth2.63E-03
77GO:0010252: auxin homeostasis2.74E-03
78GO:0009828: plant-type cell wall loosening2.74E-03
79GO:0009736: cytokinin-activated signaling pathway2.92E-03
80GO:0009451: RNA modification3.18E-03
81GO:0010027: thylakoid membrane organization3.44E-03
82GO:0009739: response to gibberellin3.72E-03
83GO:0010239: chloroplast mRNA processing3.83E-03
84GO:0044211: CTP salvage3.83E-03
85GO:0015696: ammonium transport3.83E-03
86GO:0046739: transport of virus in multicellular host3.83E-03
87GO:0032981: mitochondrial respiratory chain complex I assembly3.83E-03
88GO:2000904: regulation of starch metabolic process3.83E-03
89GO:0043572: plastid fission3.83E-03
90GO:2001141: regulation of RNA biosynthetic process3.83E-03
91GO:0016556: mRNA modification3.83E-03
92GO:1902476: chloride transmembrane transport3.83E-03
93GO:0010071: root meristem specification3.83E-03
94GO:0007231: osmosensory signaling pathway3.83E-03
95GO:0030071: regulation of mitotic metaphase/anaphase transition3.83E-03
96GO:0009800: cinnamic acid biosynthetic process3.83E-03
97GO:0051639: actin filament network formation3.83E-03
98GO:0010207: photosystem II assembly3.92E-03
99GO:0008380: RNA splicing4.17E-03
100GO:0070588: calcium ion transmembrane transport4.41E-03
101GO:2000038: regulation of stomatal complex development5.18E-03
102GO:0072488: ammonium transmembrane transport5.18E-03
103GO:0044206: UMP salvage5.18E-03
104GO:0006346: methylation-dependent chromatin silencing5.18E-03
105GO:1901141: regulation of lignin biosynthetic process5.18E-03
106GO:0051764: actin crosslink formation5.18E-03
107GO:0030104: water homeostasis5.18E-03
108GO:0051322: anaphase5.18E-03
109GO:0033500: carbohydrate homeostasis5.18E-03
110GO:0005992: trehalose biosynthetic process5.46E-03
111GO:0006306: DNA methylation6.64E-03
112GO:0016998: cell wall macromolecule catabolic process6.64E-03
113GO:0010158: abaxial cell fate specification6.66E-03
114GO:0048578: positive regulation of long-day photoperiodism, flowering6.66E-03
115GO:0032876: negative regulation of DNA endoreduplication6.66E-03
116GO:0010375: stomatal complex patterning6.66E-03
117GO:0009904: chloroplast accumulation movement6.66E-03
118GO:0006544: glycine metabolic process6.66E-03
119GO:0009107: lipoate biosynthetic process6.66E-03
120GO:1902183: regulation of shoot apical meristem development6.66E-03
121GO:0016123: xanthophyll biosynthetic process6.66E-03
122GO:0010438: cellular response to sulfur starvation6.66E-03
123GO:0010082: regulation of root meristem growth7.96E-03
124GO:0048831: regulation of shoot system development8.27E-03
125GO:0010315: auxin efflux8.27E-03
126GO:0006559: L-phenylalanine catabolic process8.27E-03
127GO:0006206: pyrimidine nucleobase metabolic process8.27E-03
128GO:0018258: protein O-linked glycosylation via hydroxyproline8.27E-03
129GO:0009228: thiamine biosynthetic process8.27E-03
130GO:0006563: L-serine metabolic process8.27E-03
131GO:0010405: arabinogalactan protein metabolic process8.27E-03
132GO:0010304: PSII associated light-harvesting complex II catabolic process8.27E-03
133GO:0009959: negative gravitropism8.27E-03
134GO:0006655: phosphatidylglycerol biosynthetic process8.27E-03
135GO:0010114: response to red light9.11E-03
136GO:0017148: negative regulation of translation1.00E-02
137GO:0009942: longitudinal axis specification1.00E-02
138GO:0048509: regulation of meristem development1.00E-02
139GO:0009903: chloroplast avoidance movement1.00E-02
140GO:0030488: tRNA methylation1.00E-02
141GO:1901259: chloroplast rRNA processing1.00E-02
142GO:0080086: stamen filament development1.00E-02
143GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.00E-02
144GO:0009955: adaxial/abaxial pattern specification1.00E-02
145GO:0008033: tRNA processing1.02E-02
146GO:0010087: phloem or xylem histogenesis1.02E-02
147GO:0009741: response to brassinosteroid1.10E-02
148GO:0009646: response to absence of light1.18E-02
149GO:0010050: vegetative phase change1.19E-02
150GO:0006400: tRNA modification1.19E-02
151GO:0030307: positive regulation of cell growth1.19E-02
152GO:0009610: response to symbiotic fungus1.19E-02
153GO:0006955: immune response1.19E-02
154GO:0048528: post-embryonic root development1.19E-02
155GO:0007050: cell cycle arrest1.19E-02
156GO:0006821: chloride transport1.19E-02
157GO:0001522: pseudouridine synthesis1.39E-02
158GO:0009850: auxin metabolic process1.39E-02
159GO:0009787: regulation of abscisic acid-activated signaling pathway1.39E-02
160GO:0009704: de-etiolation1.39E-02
161GO:0032875: regulation of DNA endoreduplication1.39E-02
162GO:0006353: DNA-templated transcription, termination1.39E-02
163GO:0048766: root hair initiation1.39E-02
164GO:0070413: trehalose metabolism in response to stress1.39E-02
165GO:0055075: potassium ion homeostasis1.39E-02
166GO:0010439: regulation of glucosinolate biosynthetic process1.39E-02
167GO:0048564: photosystem I assembly1.39E-02
168GO:0009630: gravitropism1.46E-02
169GO:0010583: response to cyclopentenone1.46E-02
170GO:0031047: gene silencing by RNA1.46E-02
171GO:0071482: cellular response to light stimulus1.59E-02
172GO:0009827: plant-type cell wall modification1.59E-02
173GO:0006526: arginine biosynthetic process1.59E-02
174GO:0010497: plasmodesmata-mediated intercellular transport1.59E-02
175GO:0009051: pentose-phosphate shunt, oxidative branch1.81E-02
176GO:2000024: regulation of leaf development1.81E-02
177GO:0009751: response to salicylic acid1.84E-02
178GO:0006508: proteolysis1.85E-02
179GO:0009638: phototropism2.04E-02
180GO:0035999: tetrahydrofolate interconversion2.04E-02
181GO:1900865: chloroplast RNA modification2.04E-02
182GO:0031425: chloroplast RNA processing2.04E-02
183GO:2000280: regulation of root development2.04E-02
184GO:0009826: unidimensional cell growth2.12E-02
185GO:0006974: cellular response to DNA damage stimulus2.21E-02
186GO:0006535: cysteine biosynthetic process from serine2.28E-02
187GO:0045036: protein targeting to chloroplast2.28E-02
188GO:0009641: shade avoidance2.28E-02
189GO:0006259: DNA metabolic process2.28E-02
190GO:0031627: telomeric loop formation2.28E-02
191GO:0009299: mRNA transcription2.28E-02
192GO:0010411: xyloglucan metabolic process2.33E-02
193GO:0006265: DNA topological change2.53E-02
194GO:0006816: calcium ion transport2.53E-02
195GO:0009773: photosynthetic electron transport in photosystem I2.53E-02
196GO:0009682: induced systemic resistance2.53E-02
197GO:0006352: DNA-templated transcription, initiation2.53E-02
198GO:0048229: gametophyte development2.53E-02
199GO:0010015: root morphogenesis2.53E-02
200GO:0048481: plant ovule development2.59E-02
201GO:0016024: CDP-diacylglycerol biosynthetic process2.79E-02
202GO:0045037: protein import into chloroplast stroma2.79E-02
203GO:0010582: floral meristem determinacy2.79E-02
204GO:2000012: regulation of auxin polar transport3.05E-02
205GO:0010628: positive regulation of gene expression3.05E-02
206GO:0006006: glucose metabolic process3.05E-02
207GO:0009785: blue light signaling pathway3.05E-02
208GO:0009691: cytokinin biosynthetic process3.05E-02
209GO:0030036: actin cytoskeleton organization3.05E-02
210GO:0010075: regulation of meristem growth3.05E-02
211GO:0009725: response to hormone3.05E-02
212GO:0009767: photosynthetic electron transport chain3.05E-02
213GO:0080167: response to karrikin3.08E-02
214GO:0005975: carbohydrate metabolic process3.18E-02
215GO:0009637: response to blue light3.28E-02
216GO:0006541: glutamine metabolic process3.33E-02
217GO:0010020: chloroplast fission3.33E-02
218GO:0009934: regulation of meristem structural organization3.33E-02
219GO:0030154: cell differentiation3.56E-02
220GO:0010039: response to iron ion3.61E-02
221GO:0090351: seedling development3.61E-02
222GO:0006839: mitochondrial transport3.74E-02
223GO:0010025: wax biosynthetic process3.90E-02
224GO:0006071: glycerol metabolic process3.90E-02
225GO:0006833: water transport3.90E-02
226GO:0007623: circadian rhythm4.15E-02
227GO:0000027: ribosomal large subunit assembly4.20E-02
228GO:0051017: actin filament bundle assembly4.20E-02
229GO:0030150: protein import into mitochondrial matrix4.20E-02
230GO:0019344: cysteine biosynthetic process4.20E-02
231GO:0009944: polarity specification of adaxial/abaxial axis4.20E-02
232GO:0008283: cell proliferation4.22E-02
233GO:0042546: cell wall biogenesis4.39E-02
234GO:0006418: tRNA aminoacylation for protein translation4.50E-02
235GO:0010073: meristem maintenance4.50E-02
236GO:0051302: regulation of cell division4.50E-02
RankGO TermAdjusted P value
1GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
2GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0004358: glutamate N-acetyltransferase activity0.00E+00
5GO:0004150: dihydroneopterin aldolase activity2.31E-05
6GO:0102083: 7,8-dihydromonapterin aldolase activity2.31E-05
7GO:0042834: peptidoglycan binding7.37E-04
8GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.37E-04
9GO:0005290: L-histidine transmembrane transporter activity7.37E-04
10GO:0003867: 4-aminobutyrate transaminase activity7.37E-04
11GO:0004071: aspartate-ammonia ligase activity7.37E-04
12GO:0004830: tryptophan-tRNA ligase activity7.37E-04
13GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.37E-04
14GO:0052381: tRNA dimethylallyltransferase activity7.37E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity7.37E-04
16GO:0051777: ent-kaurenoate oxidase activity7.37E-04
17GO:0003727: single-stranded RNA binding1.21E-03
18GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.59E-03
19GO:0008805: carbon-monoxide oxygenase activity1.59E-03
20GO:0000064: L-ornithine transmembrane transporter activity1.59E-03
21GO:0015929: hexosaminidase activity1.59E-03
22GO:0004563: beta-N-acetylhexosaminidase activity1.59E-03
23GO:0009884: cytokinin receptor activity1.59E-03
24GO:0017118: lipoyltransferase activity1.59E-03
25GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.59E-03
26GO:0043425: bHLH transcription factor binding1.59E-03
27GO:0016415: octanoyltransferase activity1.59E-03
28GO:0019843: rRNA binding1.72E-03
29GO:0009672: auxin:proton symporter activity1.96E-03
30GO:0004805: trehalose-phosphatase activity2.29E-03
31GO:0004519: endonuclease activity2.33E-03
32GO:0000156: phosphorelay response regulator activity2.53E-03
33GO:0046524: sucrose-phosphate synthase activity2.63E-03
34GO:0070330: aromatase activity2.63E-03
35GO:0017150: tRNA dihydrouridine synthase activity2.63E-03
36GO:0045548: phenylalanine ammonia-lyase activity2.63E-03
37GO:0004557: alpha-galactosidase activity2.63E-03
38GO:0016805: dipeptidase activity2.63E-03
39GO:0005034: osmosensor activity2.63E-03
40GO:0052692: raffinose alpha-galactosidase activity2.63E-03
41GO:0010329: auxin efflux transmembrane transporter activity3.47E-03
42GO:0005262: calcium channel activity3.47E-03
43GO:0015181: arginine transmembrane transporter activity3.83E-03
44GO:0043023: ribosomal large subunit binding3.83E-03
45GO:0001872: (1->3)-beta-D-glucan binding3.83E-03
46GO:0015189: L-lysine transmembrane transporter activity3.83E-03
47GO:0016987: sigma factor activity5.18E-03
48GO:0005253: anion channel activity5.18E-03
49GO:0046556: alpha-L-arabinofuranosidase activity5.18E-03
50GO:0016279: protein-lysine N-methyltransferase activity5.18E-03
51GO:0001053: plastid sigma factor activity5.18E-03
52GO:0004845: uracil phosphoribosyltransferase activity5.18E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity5.18E-03
54GO:0031418: L-ascorbic acid binding5.46E-03
55GO:0003723: RNA binding5.90E-03
56GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors6.57E-03
57GO:0004176: ATP-dependent peptidase activity6.64E-03
58GO:0018685: alkane 1-monooxygenase activity6.66E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor6.66E-03
60GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.66E-03
61GO:0008725: DNA-3-methyladenine glycosylase activity6.66E-03
62GO:0004372: glycine hydroxymethyltransferase activity6.66E-03
63GO:0016829: lyase activity8.00E-03
64GO:0008519: ammonium transmembrane transporter activity8.27E-03
65GO:0005247: voltage-gated chloride channel activity8.27E-03
66GO:2001070: starch binding8.27E-03
67GO:0004605: phosphatidate cytidylyltransferase activity8.27E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity8.27E-03
69GO:0004849: uridine kinase activity1.00E-02
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.00E-02
71GO:0004656: procollagen-proline 4-dioxygenase activity1.00E-02
72GO:0019900: kinase binding1.00E-02
73GO:0004124: cysteine synthase activity1.00E-02
74GO:0008195: phosphatidate phosphatase activity1.00E-02
75GO:0008536: Ran GTPase binding1.10E-02
76GO:0019899: enzyme binding1.19E-02
77GO:0003872: 6-phosphofructokinase activity1.19E-02
78GO:0016762: xyloglucan:xyloglucosyl transferase activity1.36E-02
79GO:0008173: RNA methyltransferase activity1.59E-02
80GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.59E-02
81GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity1.59E-02
82GO:0008237: metallopeptidase activity1.76E-02
83GO:0008889: glycerophosphodiester phosphodiesterase activity1.81E-02
84GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.81E-02
85GO:0004650: polygalacturonase activity1.87E-02
86GO:0004673: protein histidine kinase activity2.28E-02
87GO:0016798: hydrolase activity, acting on glycosyl bonds2.33E-02
88GO:0005089: Rho guanyl-nucleotide exchange factor activity2.53E-02
89GO:0003691: double-stranded telomeric DNA binding2.53E-02
90GO:0008327: methyl-CpG binding2.53E-02
91GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.59E-02
92GO:0000976: transcription regulatory region sequence-specific DNA binding2.79E-02
93GO:0004222: metalloendopeptidase activity2.86E-02
94GO:0004022: alcohol dehydrogenase (NAD) activity3.05E-02
95GO:0015266: protein channel activity3.05E-02
96GO:0004089: carbonate dehydratase activity3.05E-02
97GO:0031072: heat shock protein binding3.05E-02
98GO:0000155: phosphorelay sensor kinase activity3.05E-02
99GO:0019888: protein phosphatase regulator activity3.05E-02
100GO:0009982: pseudouridine synthase activity3.05E-02
101GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.16E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.33E-02
103GO:0004674: protein serine/threonine kinase activity3.41E-02
104GO:0015144: carbohydrate transmembrane transporter activity3.48E-02
105GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.00E-02
106GO:0005351: sugar:proton symporter activity4.03E-02
107GO:0004871: signal transducer activity4.28E-02
108GO:0042803: protein homodimerization activity4.28E-02
109GO:0043424: protein histidine kinase binding4.50E-02
110GO:0005345: purine nucleobase transmembrane transporter activity4.50E-02
111GO:0043621: protein self-association4.56E-02
112GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.67E-02
113GO:0035251: UDP-glucosyltransferase activity4.81E-02
114GO:0033612: receptor serine/threonine kinase binding4.81E-02
115GO:0004707: MAP kinase activity4.81E-02
116GO:0003964: RNA-directed DNA polymerase activity4.81E-02
117GO:0008408: 3'-5' exonuclease activity4.81E-02
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Gene type



Gene DE type





AT2G02070