Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
6GO:0009606: tropism0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0045184: establishment of protein localization0.00E+00
9GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0046620: regulation of organ growth9.37E-11
11GO:0009733: response to auxin1.51E-10
12GO:0009734: auxin-activated signaling pathway2.17E-10
13GO:0042793: transcription from plastid promoter7.57E-10
14GO:0040008: regulation of growth1.08E-06
15GO:0009451: RNA modification1.44E-06
16GO:0009926: auxin polar transport2.05E-06
17GO:0009657: plastid organization6.64E-05
18GO:0010306: rhamnogalacturonan II biosynthetic process1.17E-04
19GO:0016556: mRNA modification1.17E-04
20GO:0007275: multicellular organism development1.40E-04
21GO:0009658: chloroplast organization2.80E-04
22GO:0010252: auxin homeostasis2.91E-04
23GO:0006436: tryptophanyl-tRNA aminoacylation6.25E-04
24GO:0000066: mitochondrial ornithine transport6.25E-04
25GO:0015904: tetracycline transport6.25E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.25E-04
27GO:0006419: alanyl-tRNA aminoacylation6.25E-04
28GO:0042659: regulation of cell fate specification6.25E-04
29GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process6.25E-04
30GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.25E-04
31GO:0070509: calcium ion import6.25E-04
32GO:0090558: plant epidermis development6.25E-04
33GO:0010063: positive regulation of trichoblast fate specification6.25E-04
34GO:0010480: microsporocyte differentiation6.25E-04
35GO:0042371: vitamin K biosynthetic process6.25E-04
36GO:0035987: endodermal cell differentiation6.25E-04
37GO:0048437: floral organ development7.14E-04
38GO:0007389: pattern specification process1.08E-03
39GO:0048868: pollen tube development1.18E-03
40GO:0000902: cell morphogenesis1.29E-03
41GO:0000373: Group II intron splicing1.29E-03
42GO:2000123: positive regulation of stomatal complex development1.34E-03
43GO:0006420: arginyl-tRNA aminoacylation1.34E-03
44GO:0060359: response to ammonium ion1.34E-03
45GO:0048255: mRNA stabilization1.34E-03
46GO:1902326: positive regulation of chlorophyll biosynthetic process1.34E-03
47GO:0010569: regulation of double-strand break repair via homologous recombination1.34E-03
48GO:2000039: regulation of trichome morphogenesis1.34E-03
49GO:0018026: peptidyl-lysine monomethylation1.34E-03
50GO:0071497: cellular response to freezing1.34E-03
51GO:0009662: etioplast organization1.34E-03
52GO:1900033: negative regulation of trichome patterning1.34E-03
53GO:0009220: pyrimidine ribonucleotide biosynthetic process1.34E-03
54GO:1904143: positive regulation of carotenoid biosynthetic process1.34E-03
55GO:0080009: mRNA methylation1.34E-03
56GO:1900865: chloroplast RNA modification1.53E-03
57GO:0031425: chloroplast RNA processing1.53E-03
58GO:0009630: gravitropism1.69E-03
59GO:0010583: response to cyclopentenone1.69E-03
60GO:0009828: plant-type cell wall loosening1.99E-03
61GO:0043157: response to cation stress2.21E-03
62GO:0005977: glycogen metabolic process2.21E-03
63GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.21E-03
64GO:0090708: specification of plant organ axis polarity2.21E-03
65GO:0006954: inflammatory response2.21E-03
66GO:0006518: peptide metabolic process2.21E-03
67GO:0042780: tRNA 3'-end processing2.21E-03
68GO:0001578: microtubule bundle formation2.21E-03
69GO:0045037: protein import into chloroplast stroma2.37E-03
70GO:2000012: regulation of auxin polar transport2.70E-03
71GO:0010207: photosystem II assembly3.05E-03
72GO:1902476: chloride transmembrane transport3.22E-03
73GO:0010071: root meristem specification3.22E-03
74GO:0051513: regulation of monopolar cell growth3.22E-03
75GO:0010239: chloroplast mRNA processing3.22E-03
76GO:0044211: CTP salvage3.22E-03
77GO:0046739: transport of virus in multicellular host3.22E-03
78GO:2000904: regulation of starch metabolic process3.22E-03
79GO:0051289: protein homotetramerization3.22E-03
80GO:0043572: plastid fission3.22E-03
81GO:1901141: regulation of lignin biosynthetic process4.34E-03
82GO:0048629: trichome patterning4.34E-03
83GO:0042274: ribosomal small subunit biogenesis4.34E-03
84GO:0051322: anaphase4.34E-03
85GO:0030104: water homeostasis4.34E-03
86GO:0006221: pyrimidine nucleotide biosynthetic process4.34E-03
87GO:2000038: regulation of stomatal complex development4.34E-03
88GO:0006021: inositol biosynthetic process4.34E-03
89GO:0044205: 'de novo' UMP biosynthetic process4.34E-03
90GO:0044206: UMP salvage4.34E-03
91GO:0010021: amylopectin biosynthetic process4.34E-03
92GO:0009107: lipoate biosynthetic process5.58E-03
93GO:0016123: xanthophyll biosynthetic process5.58E-03
94GO:0010158: abaxial cell fate specification5.58E-03
95GO:0010375: stomatal complex patterning5.58E-03
96GO:0009904: chloroplast accumulation movement5.58E-03
97GO:0010236: plastoquinone biosynthetic process5.58E-03
98GO:0048497: maintenance of floral organ identity5.58E-03
99GO:0006730: one-carbon metabolic process5.65E-03
100GO:0009790: embryo development6.10E-03
101GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.16E-03
102GO:0010082: regulation of root meristem growth6.16E-03
103GO:0010405: arabinogalactan protein metabolic process6.92E-03
104GO:0009959: negative gravitropism6.92E-03
105GO:0009913: epidermal cell differentiation6.92E-03
106GO:0006655: phosphatidylglycerol biosynthetic process6.92E-03
107GO:0016554: cytidine to uridine editing6.92E-03
108GO:1902456: regulation of stomatal opening6.92E-03
109GO:0010315: auxin efflux6.92E-03
110GO:0006206: pyrimidine nucleobase metabolic process6.92E-03
111GO:0032973: amino acid export6.92E-03
112GO:0018258: protein O-linked glycosylation via hydroxyproline6.92E-03
113GO:0050665: hydrogen peroxide biosynthetic process6.92E-03
114GO:0080086: stamen filament development8.37E-03
115GO:2000067: regulation of root morphogenesis8.37E-03
116GO:0042372: phylloquinone biosynthetic process8.37E-03
117GO:0006458: 'de novo' protein folding8.37E-03
118GO:0042026: protein refolding8.37E-03
119GO:0017148: negative regulation of translation8.37E-03
120GO:0009942: longitudinal axis specification8.37E-03
121GO:1901259: chloroplast rRNA processing8.37E-03
122GO:0009903: chloroplast avoidance movement8.37E-03
123GO:0030488: tRNA methylation8.37E-03
124GO:0009854: oxidative photosynthetic carbon pathway8.37E-03
125GO:0009741: response to brassinosteroid8.50E-03
126GO:0009664: plant-type cell wall organization8.81E-03
127GO:0048544: recognition of pollen9.15E-03
128GO:0048528: post-embryonic root development9.91E-03
129GO:0007050: cell cycle arrest9.91E-03
130GO:0009772: photosynthetic electron transport in photosystem II9.91E-03
131GO:0043090: amino acid import9.91E-03
132GO:0006821: chloride transport9.91E-03
133GO:0010050: vegetative phase change9.91E-03
134GO:0015937: coenzyme A biosynthetic process9.91E-03
135GO:0006400: tRNA modification9.91E-03
136GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.91E-03
137GO:0030307: positive regulation of cell growth9.91E-03
138GO:0071554: cell wall organization or biogenesis1.05E-02
139GO:0009416: response to light stimulus1.15E-02
140GO:0000105: histidine biosynthetic process1.16E-02
141GO:0048564: photosystem I assembly1.16E-02
142GO:0001522: pseudouridine synthesis1.16E-02
143GO:0009850: auxin metabolic process1.16E-02
144GO:0048766: root hair initiation1.16E-02
145GO:0070413: trehalose metabolism in response to stress1.16E-02
146GO:0031540: regulation of anthocyanin biosynthetic process1.16E-02
147GO:0055075: potassium ion homeostasis1.16E-02
148GO:0010497: plasmodesmata-mediated intercellular transport1.33E-02
149GO:0006526: arginine biosynthetic process1.33E-02
150GO:0010204: defense response signaling pathway, resistance gene-independent1.33E-02
151GO:0009826: unidimensional cell growth1.44E-02
152GO:0006098: pentose-phosphate shunt1.51E-02
153GO:0080144: amino acid homeostasis1.51E-02
154GO:0001666: response to hypoxia1.53E-02
155GO:0010027: thylakoid membrane organization1.53E-02
156GO:0009638: phototropism1.70E-02
157GO:0042761: very long-chain fatty acid biosynthetic process1.70E-02
158GO:2000280: regulation of root development1.70E-02
159GO:0005975: carbohydrate metabolic process1.80E-02
160GO:0045036: protein targeting to chloroplast1.90E-02
161GO:0006949: syncytium formation1.90E-02
162GO:0006259: DNA metabolic process1.90E-02
163GO:0006535: cysteine biosynthetic process from serine1.90E-02
164GO:0006357: regulation of transcription from RNA polymerase II promoter1.97E-02
165GO:0006508: proteolysis1.97E-02
166GO:0048481: plant ovule development2.00E-02
167GO:0010015: root morphogenesis2.11E-02
168GO:0006265: DNA topological change2.11E-02
169GO:0009073: aromatic amino acid family biosynthetic process2.11E-02
170GO:0048229: gametophyte development2.11E-02
171GO:0006811: ion transport2.21E-02
172GO:0006790: sulfur compound metabolic process2.32E-02
173GO:0016024: CDP-diacylglycerol biosynthetic process2.32E-02
174GO:0010582: floral meristem determinacy2.32E-02
175GO:0010075: regulation of meristem growth2.54E-02
176GO:0006094: gluconeogenesis2.54E-02
177GO:0009785: blue light signaling pathway2.54E-02
178GO:0009691: cytokinin biosynthetic process2.54E-02
179GO:0010229: inflorescence development2.54E-02
180GO:0009934: regulation of meristem structural organization2.77E-02
181GO:0048467: gynoecium development2.77E-02
182GO:0010020: chloroplast fission2.77E-02
183GO:0006839: mitochondrial transport2.90E-02
184GO:0080188: RNA-directed DNA methylation3.01E-02
185GO:0070588: calcium ion transmembrane transport3.01E-02
186GO:0046854: phosphatidylinositol phosphorylation3.01E-02
187GO:0006833: water transport3.25E-02
188GO:0042023: DNA endoreduplication3.25E-02
189GO:0010114: response to red light3.28E-02
190GO:0009739: response to gibberellin3.48E-02
191GO:0005992: trehalose biosynthetic process3.50E-02
192GO:0019344: cysteine biosynthetic process3.50E-02
193GO:0009116: nucleoside metabolic process3.50E-02
194GO:0080147: root hair cell development3.50E-02
195GO:0030150: protein import into mitochondrial matrix3.50E-02
196GO:0010073: meristem maintenance3.75E-02
197GO:0051302: regulation of cell division3.75E-02
198GO:0019953: sexual reproduction3.75E-02
199GO:0006418: tRNA aminoacylation for protein translation3.75E-02
200GO:0061077: chaperone-mediated protein folding4.01E-02
201GO:0016998: cell wall macromolecule catabolic process4.01E-02
202GO:0015992: proton transport4.01E-02
203GO:0019748: secondary metabolic process4.28E-02
204GO:0016226: iron-sulfur cluster assembly4.28E-02
205GO:0031348: negative regulation of defense response4.28E-02
206GO:0009793: embryo development ending in seed dormancy4.53E-02
207GO:0009686: gibberellin biosynthetic process4.55E-02
208GO:0042127: regulation of cell proliferation4.83E-02
209GO:0006457: protein folding4.92E-02
RankGO TermAdjusted P value
1GO:0004358: glutamate N-acetyltransferase activity0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
6GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
7GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0004401: histidinol-phosphatase activity0.00E+00
10GO:0004519: endonuclease activity3.34E-07
11GO:0001872: (1->3)-beta-D-glucan binding1.17E-04
12GO:0003723: RNA binding2.29E-04
13GO:0016773: phosphotransferase activity, alcohol group as acceptor3.01E-04
14GO:0010347: L-galactose-1-phosphate phosphatase activity6.25E-04
15GO:0004632: phosphopantothenate--cysteine ligase activity6.25E-04
16GO:0051777: ent-kaurenoate oxidase activity6.25E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.25E-04
18GO:0004813: alanine-tRNA ligase activity6.25E-04
19GO:0005290: L-histidine transmembrane transporter activity6.25E-04
20GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.25E-04
21GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.25E-04
22GO:0052381: tRNA dimethylallyltransferase activity6.25E-04
23GO:0004830: tryptophan-tRNA ligase activity6.25E-04
24GO:0004176: ATP-dependent peptidase activity6.32E-04
25GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.34E-03
26GO:0004814: arginine-tRNA ligase activity1.34E-03
27GO:0016415: octanoyltransferase activity1.34E-03
28GO:0004047: aminomethyltransferase activity1.34E-03
29GO:0052832: inositol monophosphate 3-phosphatase activity1.34E-03
30GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.34E-03
31GO:0000774: adenyl-nucleotide exchange factor activity1.34E-03
32GO:0008805: carbon-monoxide oxygenase activity1.34E-03
33GO:0008934: inositol monophosphate 1-phosphatase activity1.34E-03
34GO:0019156: isoamylase activity1.34E-03
35GO:0008493: tetracycline transporter activity1.34E-03
36GO:0052833: inositol monophosphate 4-phosphatase activity1.34E-03
37GO:0000064: L-ornithine transmembrane transporter activity1.34E-03
38GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.34E-03
39GO:0017118: lipoyltransferase activity1.34E-03
40GO:0009672: auxin:proton symporter activity1.53E-03
41GO:0008237: metallopeptidase activity2.15E-03
42GO:0017150: tRNA dihydrouridine synthase activity2.21E-03
43GO:0042781: 3'-tRNA processing endoribonuclease activity2.21E-03
44GO:0016805: dipeptidase activity2.21E-03
45GO:0010329: auxin efflux transmembrane transporter activity2.70E-03
46GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.22E-03
47GO:0015189: L-lysine transmembrane transporter activity3.22E-03
48GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.22E-03
49GO:0009678: hydrogen-translocating pyrophosphatase activity3.22E-03
50GO:0009041: uridylate kinase activity3.22E-03
51GO:0015181: arginine transmembrane transporter activity3.22E-03
52GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.22E-03
53GO:0043023: ribosomal large subunit binding3.22E-03
54GO:0016279: protein-lysine N-methyltransferase activity4.34E-03
55GO:0004845: uracil phosphoribosyltransferase activity4.34E-03
56GO:0005253: anion channel activity4.34E-03
57GO:0004930: G-protein coupled receptor activity4.34E-03
58GO:0008891: glycolate oxidase activity4.34E-03
59GO:0046556: alpha-L-arabinofuranosidase activity4.34E-03
60GO:0004659: prenyltransferase activity4.34E-03
61GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.75E-03
62GO:0004523: RNA-DNA hybrid ribonuclease activity5.58E-03
63GO:0004888: transmembrane signaling receptor activity5.58E-03
64GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.58E-03
65GO:0005247: voltage-gated chloride channel activity6.92E-03
66GO:0004605: phosphatidate cytidylyltransferase activity6.92E-03
67GO:0080030: methyl indole-3-acetate esterase activity6.92E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity6.92E-03
69GO:0004332: fructose-bisphosphate aldolase activity6.92E-03
70GO:0004556: alpha-amylase activity6.92E-03
71GO:0004124: cysteine synthase activity8.37E-03
72GO:0008195: phosphatidate phosphatase activity8.37E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.37E-03
74GO:0004849: uridine kinase activity8.37E-03
75GO:0004656: procollagen-proline 4-dioxygenase activity8.37E-03
76GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting8.44E-03
77GO:0004427: inorganic diphosphatase activity9.91E-03
78GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.02E-02
79GO:0004518: nuclease activity1.13E-02
80GO:0043022: ribosome binding1.16E-02
81GO:0008173: RNA methyltransferase activity1.33E-02
82GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.33E-02
83GO:0004650: polygalacturonase activity1.35E-02
84GO:0016413: O-acetyltransferase activity1.44E-02
85GO:0051082: unfolded protein binding1.52E-02
86GO:0030247: polysaccharide binding1.81E-02
87GO:0004805: trehalose-phosphatase activity1.90E-02
88GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.96E-02
89GO:0019843: rRNA binding2.02E-02
90GO:0044183: protein binding involved in protein folding2.11E-02
91GO:0004222: metalloendopeptidase activity2.21E-02
92GO:0000049: tRNA binding2.32E-02
93GO:0004089: carbonate dehydratase activity2.54E-02
94GO:0031072: heat shock protein binding2.54E-02
95GO:0005262: calcium channel activity2.54E-02
96GO:0009982: pseudouridine synthase activity2.54E-02
97GO:0003725: double-stranded RNA binding2.54E-02
98GO:0004565: beta-galactosidase activity2.54E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity2.54E-02
100GO:0015266: protein channel activity2.54E-02
101GO:0003993: acid phosphatase activity2.66E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.77E-02
103GO:0031418: L-ascorbic acid binding3.50E-02
104GO:0043621: protein self-association3.55E-02
105GO:0051087: chaperone binding3.75E-02
106GO:0008408: 3'-5' exonuclease activity4.01E-02
107GO:0004707: MAP kinase activity4.01E-02
108GO:0033612: receptor serine/threonine kinase binding4.01E-02
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Gene type



Gene DE type