Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0061157: mRNA destabilization0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
9GO:0009606: tropism0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0097164: ammonium ion metabolic process0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0046620: regulation of organ growth2.97E-11
14GO:0009734: auxin-activated signaling pathway2.10E-09
15GO:0009926: auxin polar transport3.00E-08
16GO:0009733: response to auxin3.01E-08
17GO:0040008: regulation of growth2.39E-07
18GO:0009658: chloroplast organization1.68E-05
19GO:0007389: pattern specification process3.84E-05
20GO:0000373: Group II intron splicing5.22E-05
21GO:0010252: auxin homeostasis1.60E-04
22GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.16E-04
23GO:0009451: RNA modification2.29E-04
24GO:0051418: microtubule nucleation by microtubule organizing center4.95E-04
25GO:0070509: calcium ion import4.95E-04
26GO:0010480: microsporocyte differentiation4.95E-04
27GO:0006436: tryptophanyl-tRNA aminoacylation4.95E-04
28GO:0034080: CENP-A containing nucleosome assembly4.95E-04
29GO:0000066: mitochondrial ornithine transport4.95E-04
30GO:0042255: ribosome assembly6.32E-04
31GO:0009657: plastid organization7.70E-04
32GO:2000123: positive regulation of stomatal complex development1.07E-03
33GO:0033566: gamma-tubulin complex localization1.07E-03
34GO:1902326: positive regulation of chlorophyll biosynthetic process1.07E-03
35GO:0070981: L-asparagine biosynthetic process1.07E-03
36GO:0071497: cellular response to freezing1.07E-03
37GO:1904143: positive regulation of carotenoid biosynthetic process1.07E-03
38GO:0009786: regulation of asymmetric cell division1.07E-03
39GO:0006529: asparagine biosynthetic process1.07E-03
40GO:0009638: phototropism1.08E-03
41GO:0042761: very long-chain fatty acid biosynthetic process1.08E-03
42GO:0032502: developmental process1.08E-03
43GO:0006949: syncytium formation1.26E-03
44GO:0009828: plant-type cell wall loosening1.27E-03
45GO:0045910: negative regulation of DNA recombination1.74E-03
46GO:0048281: inflorescence morphogenesis1.74E-03
47GO:0006954: inflammatory response1.74E-03
48GO:0031145: anaphase-promoting complex-dependent catabolic process1.74E-03
49GO:0007052: mitotic spindle organization1.74E-03
50GO:0010411: xyloglucan metabolic process1.96E-03
51GO:0009742: brassinosteroid mediated signaling pathway2.17E-03
52GO:0000160: phosphorelay signal transduction system2.38E-03
53GO:0070588: calcium ion transmembrane transport2.40E-03
54GO:0051513: regulation of monopolar cell growth2.52E-03
55GO:0007231: osmosensory signaling pathway2.52E-03
56GO:0030071: regulation of mitotic metaphase/anaphase transition2.52E-03
57GO:0051639: actin filament network formation2.52E-03
58GO:0044211: CTP salvage2.52E-03
59GO:0019048: modulation by virus of host morphology or physiology2.52E-03
60GO:0090307: mitotic spindle assembly2.52E-03
61GO:0015696: ammonium transport2.52E-03
62GO:0046739: transport of virus in multicellular host2.52E-03
63GO:2000904: regulation of starch metabolic process2.52E-03
64GO:0031048: chromatin silencing by small RNA2.52E-03
65GO:0010148: transpiration2.52E-03
66GO:0016556: mRNA modification2.52E-03
67GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.52E-03
68GO:0043572: plastid fission2.52E-03
69GO:0034508: centromere complex assembly2.52E-03
70GO:1902476: chloride transmembrane transport2.52E-03
71GO:0071555: cell wall organization2.95E-03
72GO:0009944: polarity specification of adaxial/abaxial axis2.97E-03
73GO:0005992: trehalose biosynthetic process2.97E-03
74GO:0051764: actin crosslink formation3.40E-03
75GO:0072488: ammonium transmembrane transport3.40E-03
76GO:0033500: carbohydrate homeostasis3.40E-03
77GO:2000038: regulation of stomatal complex development3.40E-03
78GO:0051567: histone H3-K9 methylation3.40E-03
79GO:0044206: UMP salvage3.40E-03
80GO:0009165: nucleotide biosynthetic process3.40E-03
81GO:1901141: regulation of lignin biosynthetic process3.40E-03
82GO:0010082: regulation of root meristem growth4.32E-03
83GO:1902183: regulation of shoot apical meristem development4.36E-03
84GO:0010158: abaxial cell fate specification4.36E-03
85GO:0032876: negative regulation of DNA endoreduplication4.36E-03
86GO:0010375: stomatal complex patterning4.36E-03
87GO:0006544: glycine metabolic process4.36E-03
88GO:0009904: chloroplast accumulation movement4.36E-03
89GO:0042546: cell wall biogenesis4.40E-03
90GO:0006655: phosphatidylglycerol biosynthetic process5.40E-03
91GO:0006139: nucleobase-containing compound metabolic process5.40E-03
92GO:0010315: auxin efflux5.40E-03
93GO:0006206: pyrimidine nucleobase metabolic process5.40E-03
94GO:0018258: protein O-linked glycosylation via hydroxyproline5.40E-03
95GO:0009228: thiamine biosynthetic process5.40E-03
96GO:0016458: gene silencing5.40E-03
97GO:0006563: L-serine metabolic process5.40E-03
98GO:0010405: arabinogalactan protein metabolic process5.40E-03
99GO:0009664: plant-type cell wall organization5.59E-03
100GO:0007275: multicellular organism development5.81E-03
101GO:0009741: response to brassinosteroid5.94E-03
102GO:0009736: cytokinin-activated signaling pathway6.12E-03
103GO:0009646: response to absence of light6.39E-03
104GO:0017148: negative regulation of translation6.52E-03
105GO:0009942: longitudinal axis specification6.52E-03
106GO:1901259: chloroplast rRNA processing6.52E-03
107GO:0009903: chloroplast avoidance movement6.52E-03
108GO:0030488: tRNA methylation6.52E-03
109GO:0080086: stamen filament development6.52E-03
110GO:0048364: root development7.03E-03
111GO:0048528: post-embryonic root development7.71E-03
112GO:0006821: chloride transport7.71E-03
113GO:0010050: vegetative phase change7.71E-03
114GO:0048437: floral organ development7.71E-03
115GO:0070370: cellular heat acclimation7.71E-03
116GO:0010444: guard mother cell differentiation7.71E-03
117GO:0010103: stomatal complex morphogenesis7.71E-03
118GO:0009610: response to symbiotic fungus7.71E-03
119GO:0009826: unidimensional cell growth8.41E-03
120GO:0006402: mRNA catabolic process8.97E-03
121GO:0001522: pseudouridine synthesis8.97E-03
122GO:0009787: regulation of abscisic acid-activated signaling pathway8.97E-03
123GO:0009850: auxin metabolic process8.97E-03
124GO:0009704: de-etiolation8.97E-03
125GO:0006353: DNA-templated transcription, termination8.97E-03
126GO:0032875: regulation of DNA endoreduplication8.97E-03
127GO:0048766: root hair initiation8.97E-03
128GO:0070413: trehalose metabolism in response to stress8.97E-03
129GO:0051607: defense response to virus1.01E-02
130GO:0006002: fructose 6-phosphate metabolic process1.03E-02
131GO:0009827: plant-type cell wall modification1.03E-02
132GO:0001558: regulation of cell growth1.03E-02
133GO:0010052: guard cell differentiation1.03E-02
134GO:0010497: plasmodesmata-mediated intercellular transport1.03E-02
135GO:0006468: protein phosphorylation1.06E-02
136GO:0009051: pentose-phosphate shunt, oxidative branch1.17E-02
137GO:2000024: regulation of leaf development1.17E-02
138GO:0000902: cell morphogenesis1.17E-02
139GO:0035999: tetrahydrofolate interconversion1.32E-02
140GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.32E-02
141GO:0031425: chloroplast RNA processing1.32E-02
142GO:0006259: DNA metabolic process1.47E-02
143GO:0009299: mRNA transcription1.47E-02
144GO:0006535: cysteine biosynthetic process from serine1.47E-02
145GO:0030422: production of siRNA involved in RNA interference1.47E-02
146GO:0048829: root cap development1.47E-02
147GO:0006298: mismatch repair1.47E-02
148GO:0010015: root morphogenesis1.63E-02
149GO:0006816: calcium ion transport1.63E-02
150GO:0006265: DNA topological change1.63E-02
151GO:0009773: photosynthetic electron transport in photosystem I1.63E-02
152GO:0009089: lysine biosynthetic process via diaminopimelate1.63E-02
153GO:0006415: translational termination1.63E-02
154GO:0048229: gametophyte development1.63E-02
155GO:0016024: CDP-diacylglycerol biosynthetic process1.80E-02
156GO:0045037: protein import into chloroplast stroma1.80E-02
157GO:0010582: floral meristem determinacy1.80E-02
158GO:0009725: response to hormone1.97E-02
159GO:0009767: photosynthetic electron transport chain1.97E-02
160GO:0010628: positive regulation of gene expression1.97E-02
161GO:0009785: blue light signaling pathway1.97E-02
162GO:0006006: glucose metabolic process1.97E-02
163GO:0050826: response to freezing1.97E-02
164GO:0010075: regulation of meristem growth1.97E-02
165GO:0006839: mitochondrial transport2.02E-02
166GO:0009934: regulation of meristem structural organization2.14E-02
167GO:0006541: glutamine metabolic process2.14E-02
168GO:0010207: photosystem II assembly2.14E-02
169GO:0010020: chloroplast fission2.14E-02
170GO:0009739: response to gibberellin2.23E-02
171GO:0007166: cell surface receptor signaling pathway2.29E-02
172GO:0016310: phosphorylation2.36E-02
173GO:0010025: wax biosynthetic process2.51E-02
174GO:0006071: glycerol metabolic process2.51E-02
175GO:0009965: leaf morphogenesis2.58E-02
176GO:0019344: cysteine biosynthetic process2.71E-02
177GO:0000027: ribosomal large subunit assembly2.71E-02
178GO:0030150: protein import into mitochondrial matrix2.71E-02
179GO:0051017: actin filament bundle assembly2.71E-02
180GO:0051302: regulation of cell division2.90E-02
181GO:0006418: tRNA aminoacylation for protein translation2.90E-02
182GO:0006825: copper ion transport2.90E-02
183GO:0006306: DNA methylation3.11E-02
184GO:0016998: cell wall macromolecule catabolic process3.11E-02
185GO:0051603: proteolysis involved in cellular protein catabolic process3.20E-02
186GO:0006730: one-carbon metabolic process3.31E-02
187GO:0031348: negative regulation of defense response3.31E-02
188GO:0006417: regulation of translation3.42E-02
189GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.53E-02
190GO:0001944: vasculature development3.53E-02
191GO:0010091: trichome branching3.74E-02
192GO:0006284: base-excision repair3.74E-02
193GO:0048316: seed development3.77E-02
194GO:0009740: gibberellic acid mediated signaling pathway4.13E-02
195GO:0048653: anther development4.19E-02
196GO:0000226: microtubule cytoskeleton organization4.19E-02
197GO:0008033: tRNA processing4.19E-02
198GO:0010087: phloem or xylem histogenesis4.19E-02
199GO:0080167: response to karrikin4.35E-02
200GO:0009958: positive gravitropism4.42E-02
201GO:0006662: glycerol ether metabolic process4.42E-02
202GO:0048868: pollen tube development4.42E-02
203GO:0006342: chromatin silencing4.42E-02
204GO:0009735: response to cytokinin4.49E-02
205GO:0007059: chromosome segregation4.65E-02
206GO:0048544: recognition of pollen4.65E-02
207GO:0008654: phospholipid biosynthetic process4.88E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0009672: auxin:proton symporter activity6.87E-05
4GO:0019199: transmembrane receptor protein kinase activity1.36E-04
5GO:0004519: endonuclease activity1.48E-04
6GO:0010329: auxin efflux transmembrane transporter activity1.64E-04
7GO:0050139: nicotinate-N-glucosyltransferase activity4.95E-04
8GO:0005290: L-histidine transmembrane transporter activity4.95E-04
9GO:0004008: copper-exporting ATPase activity4.95E-04
10GO:0004071: aspartate-ammonia ligase activity4.95E-04
11GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.95E-04
12GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.95E-04
13GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.95E-04
14GO:0004830: tryptophan-tRNA ligase activity4.95E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity4.95E-04
16GO:0003727: single-stranded RNA binding5.67E-04
17GO:0019843: rRNA binding5.89E-04
18GO:0016762: xyloglucan:xyloglucosyl transferase activity9.96E-04
19GO:0000064: L-ornithine transmembrane transporter activity1.07E-03
20GO:0015929: hexosaminidase activity1.07E-03
21GO:0004563: beta-N-acetylhexosaminidase activity1.07E-03
22GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.07E-03
23GO:0050017: L-3-cyanoalanine synthase activity1.07E-03
24GO:0043425: bHLH transcription factor binding1.07E-03
25GO:0000156: phosphorelay response regulator activity1.17E-03
26GO:0004805: trehalose-phosphatase activity1.26E-03
27GO:0070330: aromatase activity1.74E-03
28GO:0017150: tRNA dihydrouridine synthase activity1.74E-03
29GO:0004557: alpha-galactosidase activity1.74E-03
30GO:0052692: raffinose alpha-galactosidase activity1.74E-03
31GO:0070180: large ribosomal subunit rRNA binding1.74E-03
32GO:0005262: calcium channel activity1.90E-03
33GO:0016798: hydrolase activity, acting on glycosyl bonds1.96E-03
34GO:0001872: (1->3)-beta-D-glucan binding2.52E-03
35GO:0015189: L-lysine transmembrane transporter activity2.52E-03
36GO:0015181: arginine transmembrane transporter activity2.52E-03
37GO:0003723: RNA binding2.52E-03
38GO:0017172: cysteine dioxygenase activity2.52E-03
39GO:0035197: siRNA binding2.52E-03
40GO:0043023: ribosomal large subunit binding2.52E-03
41GO:0004845: uracil phosphoribosyltransferase activity3.40E-03
42GO:0004345: glucose-6-phosphate dehydrogenase activity3.40E-03
43GO:0043015: gamma-tubulin binding3.40E-03
44GO:0005253: anion channel activity3.40E-03
45GO:0042277: peptide binding3.40E-03
46GO:0008725: DNA-3-methyladenine glycosylase activity4.36E-03
47GO:0004372: glycine hydroxymethyltransferase activity4.36E-03
48GO:0016773: phosphotransferase activity, alcohol group as acceptor4.36E-03
49GO:0018685: alkane 1-monooxygenase activity4.36E-03
50GO:0030983: mismatched DNA binding5.40E-03
51GO:0004605: phosphatidate cytidylyltransferase activity5.40E-03
52GO:1990714: hydroxyproline O-galactosyltransferase activity5.40E-03
53GO:0008519: ammonium transmembrane transporter activity5.40E-03
54GO:0005247: voltage-gated chloride channel activity5.40E-03
55GO:0004674: protein serine/threonine kinase activity5.69E-03
56GO:0004124: cysteine synthase activity6.52E-03
57GO:0008195: phosphatidate phosphatase activity6.52E-03
58GO:0004849: uridine kinase activity6.52E-03
59GO:0003730: mRNA 3'-UTR binding6.52E-03
60GO:0004656: procollagen-proline 4-dioxygenase activity6.52E-03
61GO:0003872: 6-phosphofructokinase activity7.71E-03
62GO:0016301: kinase activity9.97E-03
63GO:0005375: copper ion transmembrane transporter activity1.03E-02
64GO:0008173: RNA methyltransferase activity1.03E-02
65GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.03E-02
66GO:0050660: flavin adenine dinucleotide binding1.11E-02
67GO:0008889: glycerophosphodiester phosphodiesterase activity1.17E-02
68GO:0003747: translation release factor activity1.17E-02
69GO:0030170: pyridoxal phosphate binding1.46E-02
70GO:0003735: structural constituent of ribosome1.47E-02
71GO:0004713: protein tyrosine kinase activity1.47E-02
72GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.62E-02
73GO:0005089: Rho guanyl-nucleotide exchange factor activity1.63E-02
74GO:0042803: protein homodimerization activity1.74E-02
75GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.77E-02
76GO:0004521: endoribonuclease activity1.80E-02
77GO:0000976: transcription regulatory region sequence-specific DNA binding1.80E-02
78GO:0004672: protein kinase activity1.87E-02
79GO:0009982: pseudouridine synthase activity1.97E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity1.97E-02
81GO:0015266: protein channel activity1.97E-02
82GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.97E-02
83GO:0004089: carbonate dehydratase activity1.97E-02
84GO:0031072: heat shock protein binding1.97E-02
85GO:0042393: histone binding2.02E-02
86GO:0004185: serine-type carboxypeptidase activity2.29E-02
87GO:0031418: L-ascorbic acid binding2.71E-02
88GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.82E-02
89GO:0005345: purine nucleobase transmembrane transporter activity2.90E-02
90GO:0030246: carbohydrate binding2.91E-02
91GO:0035251: UDP-glucosyltransferase activity3.11E-02
92GO:0004176: ATP-dependent peptidase activity3.11E-02
93GO:0033612: receptor serine/threonine kinase binding3.11E-02
94GO:0003690: double-stranded DNA binding3.20E-02
95GO:0004812: aminoacyl-tRNA ligase activity3.96E-02
96GO:0047134: protein-disulfide reductase activity3.96E-02
97GO:0004650: polygalacturonase activity4.01E-02
98GO:0004791: thioredoxin-disulfide reductase activity4.65E-02
99GO:0019901: protein kinase binding4.88E-02
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Gene type



Gene DE type