Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
2GO:1901698: response to nitrogen compound0.00E+00
3GO:0010068: protoderm histogenesis0.00E+00
4GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0097164: ammonium ion metabolic process0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0010480: microsporocyte differentiation0.00E+00
9GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0007172: signal complex assembly0.00E+00
11GO:0015843: methylammonium transport0.00E+00
12GO:0031222: arabinan catabolic process0.00E+00
13GO:0070979: protein K11-linked ubiquitination0.00E+00
14GO:0061157: mRNA destabilization0.00E+00
15GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
16GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
17GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
18GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.04E-08
19GO:0046620: regulation of organ growth3.54E-05
20GO:0006468: protein phosphorylation7.67E-05
21GO:0032502: developmental process1.70E-04
22GO:0030154: cell differentiation2.33E-04
23GO:0009934: regulation of meristem structural organization2.46E-04
24GO:0032876: negative regulation of DNA endoreduplication2.48E-04
25GO:0009733: response to auxin2.57E-04
26GO:0009734: auxin-activated signaling pathway4.61E-04
27GO:0000160: phosphorelay signal transduction system4.78E-04
28GO:0006264: mitochondrial DNA replication5.51E-04
29GO:0043609: regulation of carbon utilization5.51E-04
30GO:0033259: plastid DNA replication5.51E-04
31GO:0006436: tryptophanyl-tRNA aminoacylation5.51E-04
32GO:0000066: mitochondrial ornithine transport5.51E-04
33GO:0034757: negative regulation of iron ion transport5.51E-04
34GO:0048437: floral organ development5.95E-04
35GO:0042255: ribosome assembly7.41E-04
36GO:0006002: fructose 6-phosphate metabolic process9.02E-04
37GO:0009926: auxin polar transport9.42E-04
38GO:0009646: response to absence of light1.03E-03
39GO:0000373: Group II intron splicing1.08E-03
40GO:0070981: L-asparagine biosynthetic process1.19E-03
41GO:0010271: regulation of chlorophyll catabolic process1.19E-03
42GO:0010434: bract formation1.19E-03
43GO:0048439: flower morphogenesis1.19E-03
44GO:0009786: regulation of asymmetric cell division1.19E-03
45GO:0031648: protein destabilization1.19E-03
46GO:0071258: cellular response to gravity1.19E-03
47GO:0006529: asparagine biosynthetic process1.19E-03
48GO:0010254: nectary development1.19E-03
49GO:0031425: chloroplast RNA processing1.27E-03
50GO:0009638: phototropism1.27E-03
51GO:0009736: cytokinin-activated signaling pathway1.48E-03
52GO:0048229: gametophyte development1.71E-03
53GO:0006000: fructose metabolic process1.95E-03
54GO:0031145: anaphase-promoting complex-dependent catabolic process1.95E-03
55GO:0070475: rRNA base methylation1.95E-03
56GO:0051604: protein maturation1.95E-03
57GO:0071705: nitrogen compound transport1.95E-03
58GO:0016050: vesicle organization1.95E-03
59GO:0009954: proximal/distal pattern formation1.95E-03
60GO:0031022: nuclear migration along microfilament1.95E-03
61GO:0051127: positive regulation of actin nucleation1.95E-03
62GO:0080117: secondary growth1.95E-03
63GO:0010582: floral meristem determinacy1.97E-03
64GO:0010075: regulation of meristem growth2.24E-03
65GO:0009767: photosynthetic electron transport chain2.24E-03
66GO:0016310: phosphorylation2.74E-03
67GO:0048645: animal organ formation2.82E-03
68GO:0019048: modulation by virus of host morphology or physiology2.82E-03
69GO:0015696: ammonium transport2.82E-03
70GO:0046739: transport of virus in multicellular host2.82E-03
71GO:0032981: mitochondrial respiratory chain complex I assembly2.82E-03
72GO:2000904: regulation of starch metabolic process2.82E-03
73GO:0031048: chromatin silencing by small RNA2.82E-03
74GO:0051289: protein homotetramerization2.82E-03
75GO:0043572: plastid fission2.82E-03
76GO:0009067: aspartate family amino acid biosynthetic process2.82E-03
77GO:1902476: chloride transmembrane transport2.82E-03
78GO:0007231: osmosensory signaling pathway2.82E-03
79GO:0030071: regulation of mitotic metaphase/anaphase transition2.82E-03
80GO:0051639: actin filament network formation2.82E-03
81GO:0009800: cinnamic acid biosynthetic process2.82E-03
82GO:0009650: UV protection2.82E-03
83GO:0044211: CTP salvage2.82E-03
84GO:0090351: seedling development2.83E-03
85GO:0005992: trehalose biosynthetic process3.51E-03
86GO:0009944: polarity specification of adaxial/abaxial axis3.51E-03
87GO:0022622: root system development3.81E-03
88GO:2000038: regulation of stomatal complex development3.81E-03
89GO:0006552: leucine catabolic process3.81E-03
90GO:0051567: histone H3-K9 methylation3.81E-03
91GO:0044205: 'de novo' UMP biosynthetic process3.81E-03
92GO:0044206: UMP salvage3.81E-03
93GO:0009165: nucleotide biosynthetic process3.81E-03
94GO:0051764: actin crosslink formation3.81E-03
95GO:0071249: cellular response to nitrate3.81E-03
96GO:0072488: ammonium transmembrane transport3.81E-03
97GO:0033500: carbohydrate homeostasis3.81E-03
98GO:0080167: response to karrikin4.41E-03
99GO:0071493: cellular response to UV-B4.88E-03
100GO:0009904: chloroplast accumulation movement4.88E-03
101GO:0006544: glycine metabolic process4.88E-03
102GO:1902183: regulation of shoot apical meristem development4.88E-03
103GO:0016123: xanthophyll biosynthetic process4.88E-03
104GO:0010158: abaxial cell fate specification4.88E-03
105GO:0030308: negative regulation of cell growth4.88E-03
106GO:0016131: brassinosteroid metabolic process4.88E-03
107GO:0040008: regulation of growth5.48E-03
108GO:0042793: transcription from plastid promoter6.06E-03
109GO:0048831: regulation of shoot system development6.06E-03
110GO:0045962: positive regulation of development, heterochronic6.06E-03
111GO:0006559: L-phenylalanine catabolic process6.06E-03
112GO:0006206: pyrimidine nucleobase metabolic process6.06E-03
113GO:0016458: gene silencing6.06E-03
114GO:0018258: protein O-linked glycosylation via hydroxyproline6.06E-03
115GO:0009228: thiamine biosynthetic process6.06E-03
116GO:0006563: L-serine metabolic process6.06E-03
117GO:0010405: arabinogalactan protein metabolic process6.06E-03
118GO:0009959: negative gravitropism6.06E-03
119GO:0006655: phosphatidylglycerol biosynthetic process6.06E-03
120GO:0006139: nucleobase-containing compound metabolic process6.06E-03
121GO:0010087: phloem or xylem histogenesis6.50E-03
122GO:0048653: anther development6.50E-03
123GO:0042631: cellular response to water deprivation6.50E-03
124GO:0007166: cell surface receptor signaling pathway7.23E-03
125GO:0048509: regulation of meristem development7.32E-03
126GO:0009903: chloroplast avoidance movement7.32E-03
127GO:0030488: tRNA methylation7.32E-03
128GO:0009088: threonine biosynthetic process7.32E-03
129GO:2000037: regulation of stomatal complex patterning7.32E-03
130GO:0009648: photoperiodism7.32E-03
131GO:0007018: microtubule-based movement7.55E-03
132GO:0010050: vegetative phase change8.66E-03
133GO:0022904: respiratory electron transport chain8.66E-03
134GO:0032880: regulation of protein localization8.66E-03
135GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.66E-03
136GO:0010161: red light signaling pathway8.66E-03
137GO:0009610: response to symbiotic fungus8.66E-03
138GO:0006955: immune response8.66E-03
139GO:0006821: chloride transport8.66E-03
140GO:0009850: auxin metabolic process1.01E-02
141GO:0009787: regulation of abscisic acid-activated signaling pathway1.01E-02
142GO:0009704: de-etiolation1.01E-02
143GO:0032875: regulation of DNA endoreduplication1.01E-02
144GO:0030162: regulation of proteolysis1.01E-02
145GO:0006353: DNA-templated transcription, termination1.01E-02
146GO:0009658: chloroplast organization1.15E-02
147GO:0010100: negative regulation of photomorphogenesis1.16E-02
148GO:0010497: plasmodesmata-mediated intercellular transport1.16E-02
149GO:0006526: arginine biosynthetic process1.16E-02
150GO:0032544: plastid translation1.16E-02
151GO:0007389: pattern specification process1.16E-02
152GO:0010099: regulation of photomorphogenesis1.16E-02
153GO:0009827: plant-type cell wall modification1.16E-02
154GO:0051607: defense response to virus1.19E-02
155GO:2000024: regulation of leaf development1.32E-02
156GO:0006783: heme biosynthetic process1.32E-02
157GO:0000902: cell morphogenesis1.32E-02
158GO:0009051: pentose-phosphate shunt, oxidative branch1.32E-02
159GO:0051865: protein autoubiquitination1.32E-02
160GO:0010029: regulation of seed germination1.34E-02
161GO:0035999: tetrahydrofolate interconversion1.48E-02
162GO:0030244: cellulose biosynthetic process1.65E-02
163GO:0006535: cysteine biosynthetic process from serine1.66E-02
164GO:0030422: production of siRNA involved in RNA interference1.66E-02
165GO:0048829: root cap development1.66E-02
166GO:0009641: shade avoidance1.66E-02
167GO:0009299: mRNA transcription1.66E-02
168GO:0009089: lysine biosynthetic process via diaminopimelate1.84E-02
169GO:0009773: photosynthetic electron transport in photosystem I1.84E-02
170GO:0006816: calcium ion transport1.84E-02
171GO:0015706: nitrate transport2.02E-02
172GO:0016024: CDP-diacylglycerol biosynthetic process2.02E-02
173GO:0008361: regulation of cell size2.02E-02
174GO:2000012: regulation of auxin polar transport2.22E-02
175GO:0010628: positive regulation of gene expression2.22E-02
176GO:0009785: blue light signaling pathway2.22E-02
177GO:0006006: glucose metabolic process2.22E-02
178GO:0030036: actin cytoskeleton organization2.22E-02
179GO:0009725: response to hormone2.22E-02
180GO:0007623: circadian rhythm2.38E-02
181GO:0006839: mitochondrial transport2.39E-02
182GO:0006541: glutamine metabolic process2.42E-02
183GO:0010020: chloroplast fission2.42E-02
184GO:0006897: endocytosis2.50E-02
185GO:0010167: response to nitrate2.62E-02
186GO:0010030: positive regulation of seed germination2.62E-02
187GO:0070588: calcium ion transmembrane transport2.62E-02
188GO:0009833: plant-type primary cell wall biogenesis2.83E-02
189GO:0006071: glycerol metabolic process2.83E-02
190GO:0008380: RNA splicing2.97E-02
191GO:0051017: actin filament bundle assembly3.05E-02
192GO:0010187: negative regulation of seed germination3.05E-02
193GO:0019344: cysteine biosynthetic process3.05E-02
194GO:0006418: tRNA aminoacylation for protein translation3.27E-02
195GO:0006825: copper ion transport3.27E-02
196GO:0006306: DNA methylation3.50E-02
197GO:0016998: cell wall macromolecule catabolic process3.50E-02
198GO:2000022: regulation of jasmonic acid mediated signaling pathway3.73E-02
199GO:0006730: one-carbon metabolic process3.73E-02
200GO:0010082: regulation of root meristem growth3.97E-02
201GO:0071215: cellular response to abscisic acid stimulus3.97E-02
202GO:0009686: gibberellin biosynthetic process3.97E-02
203GO:0010227: floral organ abscission3.97E-02
204GO:0006417: regulation of translation4.03E-02
205GO:0006284: base-excision repair4.21E-02
206GO:0010214: seed coat development4.21E-02
207GO:0048367: shoot system development4.44E-02
208GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.46E-02
209GO:0070417: cellular response to cold4.46E-02
210GO:0008284: positive regulation of cell proliferation4.46E-02
211GO:0042335: cuticle development4.71E-02
212GO:0008033: tRNA processing4.71E-02
213GO:0009740: gibberellic acid mediated signaling pathway4.87E-02
214GO:0009723: response to ethylene4.89E-02
215GO:0006342: chromatin silencing4.97E-02
216GO:0009958: positive gravitropism4.97E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0048039: ubiquinone binding0.00E+00
3GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
4GO:0004056: argininosuccinate lyase activity0.00E+00
5GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity0.00E+00
6GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
7GO:0070009: serine-type aminopeptidase activity0.00E+00
8GO:0019136: deoxynucleoside kinase activity0.00E+00
9GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
10GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
11GO:0004674: protein serine/threonine kinase activity1.57E-05
12GO:0043621: protein self-association1.76E-04
13GO:0016773: phosphotransferase activity, alcohol group as acceptor2.48E-04
14GO:0016301: kinase activity3.86E-04
15GO:0033612: receptor serine/threonine kinase binding4.98E-04
16GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity5.51E-04
17GO:0005290: L-histidine transmembrane transporter activity5.51E-04
18GO:0004008: copper-exporting ATPase activity5.51E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.51E-04
20GO:0004071: aspartate-ammonia ligase activity5.51E-04
21GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.51E-04
22GO:0004830: tryptophan-tRNA ligase activity5.51E-04
23GO:0010313: phytochrome binding5.51E-04
24GO:0050139: nicotinate-N-glucosyltransferase activity5.51E-04
25GO:0042834: peptidoglycan binding5.51E-04
26GO:0003727: single-stranded RNA binding6.97E-04
27GO:0000064: L-ornithine transmembrane transporter activity1.19E-03
28GO:0015929: hexosaminidase activity1.19E-03
29GO:0004563: beta-N-acetylhexosaminidase activity1.19E-03
30GO:0009884: cytokinin receptor activity1.19E-03
31GO:0050017: L-3-cyanoalanine synthase activity1.19E-03
32GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.19E-03
33GO:0043425: bHLH transcription factor binding1.19E-03
34GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.19E-03
35GO:0005524: ATP binding1.23E-03
36GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.23E-03
37GO:0000156: phosphorelay response regulator activity1.44E-03
38GO:0004805: trehalose-phosphatase activity1.48E-03
39GO:0005089: Rho guanyl-nucleotide exchange factor activity1.71E-03
40GO:0017150: tRNA dihydrouridine synthase activity1.95E-03
41GO:0045548: phenylalanine ammonia-lyase activity1.95E-03
42GO:0005034: osmosensor activity1.95E-03
43GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.95E-03
44GO:0070180: large ribosomal subunit rRNA binding1.95E-03
45GO:0070330: aromatase activity1.95E-03
46GO:0017172: cysteine dioxygenase activity2.82E-03
47GO:0015181: arginine transmembrane transporter activity2.82E-03
48GO:0035197: siRNA binding2.82E-03
49GO:0015189: L-lysine transmembrane transporter activity2.82E-03
50GO:0004072: aspartate kinase activity2.82E-03
51GO:0019199: transmembrane receptor protein kinase activity3.81E-03
52GO:0005253: anion channel activity3.81E-03
53GO:0046556: alpha-L-arabinofuranosidase activity3.81E-03
54GO:0004845: uracil phosphoribosyltransferase activity3.81E-03
55GO:0004345: glucose-6-phosphate dehydrogenase activity3.81E-03
56GO:0008409: 5'-3' exonuclease activity3.81E-03
57GO:0004672: protein kinase activity4.23E-03
58GO:0018685: alkane 1-monooxygenase activity4.88E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity4.88E-03
60GO:0004372: glycine hydroxymethyltransferase activity4.88E-03
61GO:0008519: ammonium transmembrane transporter activity6.06E-03
62GO:0005247: voltage-gated chloride channel activity6.06E-03
63GO:2001070: starch binding6.06E-03
64GO:0004605: phosphatidate cytidylyltransferase activity6.06E-03
65GO:1990714: hydroxyproline O-galactosyltransferase activity6.06E-03
66GO:0004849: uridine kinase activity7.32E-03
67GO:0019900: kinase binding7.32E-03
68GO:0004124: cysteine synthase activity7.32E-03
69GO:0008195: phosphatidate phosphatase activity7.32E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.32E-03
71GO:0003872: 6-phosphofructokinase activity8.66E-03
72GO:0051015: actin filament binding9.91E-03
73GO:0103075: indole-3-pyruvate monooxygenase activity1.01E-02
74GO:0016759: cellulose synthase activity1.05E-02
75GO:0008970: phosphatidylcholine 1-acylhydrolase activity1.16E-02
76GO:0008173: RNA methyltransferase activity1.16E-02
77GO:0005375: copper ion transmembrane transporter activity1.16E-02
78GO:0008889: glycerophosphodiester phosphodiesterase activity1.32E-02
79GO:0009672: auxin:proton symporter activity1.48E-02
80GO:0004713: protein tyrosine kinase activity1.66E-02
81GO:0004673: protein histidine kinase activity1.66E-02
82GO:0016829: lyase activity1.75E-02
83GO:0004252: serine-type endopeptidase activity1.81E-02
84GO:0004521: endoribonuclease activity2.02E-02
85GO:0016491: oxidoreductase activity2.11E-02
86GO:0004022: alcohol dehydrogenase (NAD) activity2.22E-02
87GO:0010329: auxin efflux transmembrane transporter activity2.22E-02
88GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.22E-02
89GO:0004089: carbonate dehydratase activity2.22E-02
90GO:0031072: heat shock protein binding2.22E-02
91GO:0000155: phosphorelay sensor kinase activity2.22E-02
92GO:0005262: calcium channel activity2.22E-02
93GO:0009982: pseudouridine synthase activity2.22E-02
94GO:0042803: protein homodimerization activity2.23E-02
95GO:0004871: signal transducer activity2.23E-02
96GO:0050661: NADP binding2.39E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.42E-02
98GO:0008083: growth factor activity2.42E-02
99GO:0003887: DNA-directed DNA polymerase activity2.83E-02
100GO:0042802: identical protein binding3.21E-02
101GO:0005345: purine nucleobase transmembrane transporter activity3.27E-02
102GO:0015079: potassium ion transmembrane transporter activity3.27E-02
103GO:0043424: protein histidine kinase binding3.27E-02
104GO:0004176: ATP-dependent peptidase activity3.50E-02
105GO:0035251: UDP-glucosyltransferase activity3.50E-02
106GO:0003690: double-stranded DNA binding3.77E-02
107GO:0016760: cellulose synthase (UDP-forming) activity3.97E-02
108GO:0030570: pectate lyase activity3.97E-02
109GO:0003777: microtubule motor activity4.03E-02
110GO:0008514: organic anion transmembrane transporter activity4.21E-02
111GO:0004499: N,N-dimethylaniline monooxygenase activity4.21E-02
112GO:0004812: aminoacyl-tRNA ligase activity4.46E-02
113GO:0050660: flavin adenine dinucleotide binding4.89E-02
114GO:0008536: Ran GTPase binding4.97E-02
115GO:0001085: RNA polymerase II transcription factor binding4.97E-02
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Gene type



Gene DE type