Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:0009606: tropism0.00E+00
5GO:0090322: regulation of superoxide metabolic process0.00E+00
6GO:0000372: Group I intron splicing0.00E+00
7GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0080127: fruit septum development0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0046486: glycerolipid metabolic process0.00E+00
14GO:0019988: charged-tRNA amino acid modification0.00E+00
15GO:0090615: mitochondrial mRNA processing0.00E+00
16GO:0000492: box C/D snoRNP assembly0.00E+00
17GO:0042794: rRNA transcription from plastid promoter0.00E+00
18GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
19GO:0045014: negative regulation of transcription by glucose0.00E+00
20GO:0009658: chloroplast organization1.62E-06
21GO:0042793: transcription from plastid promoter1.57E-05
22GO:0010569: regulation of double-strand break repair via homologous recombination1.99E-05
23GO:0042255: ribosome assembly5.86E-05
24GO:0046620: regulation of organ growth5.86E-05
25GO:0006353: DNA-templated transcription, termination5.86E-05
26GO:0006518: peptide metabolic process6.49E-05
27GO:0009734: auxin-activated signaling pathway7.84E-05
28GO:0010305: leaf vascular tissue pattern formation1.82E-04
29GO:2000038: regulation of stomatal complex development2.29E-04
30GO:0009733: response to auxin2.53E-04
31GO:0048497: maintenance of floral organ identity3.45E-04
32GO:0009793: embryo development ending in seed dormancy4.51E-04
33GO:0009913: epidermal cell differentiation4.81E-04
34GO:0006364: rRNA processing4.98E-04
35GO:0040008: regulation of growth5.55E-04
36GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.81E-04
37GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.81E-04
38GO:1905039: carboxylic acid transmembrane transport6.81E-04
39GO:1905200: gibberellic acid transmembrane transport6.81E-04
40GO:0080112: seed growth6.81E-04
41GO:0090558: plant epidermis development6.81E-04
42GO:1903866: palisade mesophyll development6.81E-04
43GO:0010063: positive regulation of trichoblast fate specification6.81E-04
44GO:0033206: meiotic cytokinesis6.81E-04
45GO:0035987: endodermal cell differentiation6.81E-04
46GO:0034757: negative regulation of iron ion transport6.81E-04
47GO:0042659: regulation of cell fate specification6.81E-04
48GO:0006401: RNA catabolic process8.13E-04
49GO:0042127: regulation of cell proliferation1.04E-03
50GO:0007389: pattern specification process1.23E-03
51GO:0008033: tRNA processing1.27E-03
52GO:1901529: positive regulation of anion channel activity1.47E-03
53GO:0009967: positive regulation of signal transduction1.47E-03
54GO:0010271: regulation of chlorophyll catabolic process1.47E-03
55GO:0010541: acropetal auxin transport1.47E-03
56GO:0048731: system development1.47E-03
57GO:0006650: glycerophospholipid metabolic process1.47E-03
58GO:0009662: etioplast organization1.47E-03
59GO:1900033: negative regulation of trichome patterning1.47E-03
60GO:2000071: regulation of defense response by callose deposition1.47E-03
61GO:0000373: Group II intron splicing1.47E-03
62GO:0080009: mRNA methylation1.47E-03
63GO:2000123: positive regulation of stomatal complex development1.47E-03
64GO:0009926: auxin polar transport1.53E-03
65GO:1900865: chloroplast RNA modification1.74E-03
66GO:0080156: mitochondrial mRNA modification1.84E-03
67GO:0032502: developmental process2.00E-03
68GO:0048829: root cap development2.04E-03
69GO:0006949: syncytium formation2.04E-03
70GO:0009828: plant-type cell wall loosening2.35E-03
71GO:0080117: secondary growth2.43E-03
72GO:0046168: glycerol-3-phosphate catabolic process2.43E-03
73GO:0044210: 'de novo' CTP biosynthetic process2.43E-03
74GO:0090391: granum assembly2.43E-03
75GO:0042780: tRNA 3'-end processing2.43E-03
76GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.43E-03
77GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.43E-03
78GO:0090708: specification of plant organ axis polarity2.43E-03
79GO:0045037: protein import into chloroplast stroma2.71E-03
80GO:0010588: cotyledon vascular tissue pattern formation3.08E-03
81GO:0048367: shoot system development3.31E-03
82GO:0010540: basipetal auxin transport3.48E-03
83GO:0007276: gamete generation3.53E-03
84GO:0043481: anthocyanin accumulation in tissues in response to UV light3.53E-03
85GO:0010306: rhamnogalacturonan II biosynthetic process3.53E-03
86GO:0006072: glycerol-3-phosphate metabolic process3.53E-03
87GO:0045017: glycerolipid biosynthetic process3.53E-03
88GO:0010371: regulation of gibberellin biosynthetic process3.53E-03
89GO:0010071: root meristem specification3.53E-03
90GO:0033169: histone H3-K9 demethylation3.53E-03
91GO:0009102: biotin biosynthetic process3.53E-03
92GO:0010239: chloroplast mRNA processing3.53E-03
93GO:0080188: RNA-directed DNA methylation3.91E-03
94GO:0030104: water homeostasis4.76E-03
95GO:0006221: pyrimidine nucleotide biosynthetic process4.76E-03
96GO:0006021: inositol biosynthetic process4.76E-03
97GO:0009956: radial pattern formation4.76E-03
98GO:0006808: regulation of nitrogen utilization4.76E-03
99GO:0006479: protein methylation4.76E-03
100GO:0048629: trichome patterning4.76E-03
101GO:1900864: mitochondrial RNA modification4.76E-03
102GO:0080147: root hair cell development4.84E-03
103GO:2000377: regulation of reactive oxygen species metabolic process4.84E-03
104GO:0009416: response to light stimulus5.23E-03
105GO:0003333: amino acid transmembrane transport5.89E-03
106GO:0030308: negative regulation of cell growth6.12E-03
107GO:0010375: stomatal complex patterning6.12E-03
108GO:0080110: sporopollenin biosynthetic process6.12E-03
109GO:0016131: brassinosteroid metabolic process6.12E-03
110GO:0016120: carotene biosynthetic process6.12E-03
111GO:0016123: xanthophyll biosynthetic process6.12E-03
112GO:0032876: negative regulation of DNA endoreduplication6.12E-03
113GO:2000022: regulation of jasmonic acid mediated signaling pathway6.46E-03
114GO:0030001: metal ion transport6.67E-03
115GO:0071215: cellular response to abscisic acid stimulus7.05E-03
116GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.05E-03
117GO:0016554: cytidine to uridine editing7.60E-03
118GO:0060918: auxin transport7.60E-03
119GO:1902456: regulation of stomatal opening7.60E-03
120GO:0048831: regulation of shoot system development7.60E-03
121GO:0010315: auxin efflux7.60E-03
122GO:0003006: developmental process involved in reproduction7.60E-03
123GO:0009643: photosynthetic acclimation7.60E-03
124GO:0006014: D-ribose metabolic process7.60E-03
125GO:0009959: negative gravitropism7.60E-03
126GO:0006284: base-excision repair7.68E-03
127GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.27E-03
128GO:0010087: phloem or xylem histogenesis9.02E-03
129GO:0010118: stomatal movement9.02E-03
130GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)9.20E-03
131GO:0009942: longitudinal axis specification9.20E-03
132GO:0048509: regulation of meristem development9.20E-03
133GO:2000033: regulation of seed dormancy process9.20E-03
134GO:2000037: regulation of stomatal complex patterning9.20E-03
135GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity9.20E-03
136GO:0010310: regulation of hydrogen peroxide metabolic process9.20E-03
137GO:2000067: regulation of root morphogenesis9.20E-03
138GO:0009955: adaxial/abaxial pattern specification9.20E-03
139GO:0009451: RNA modification1.00E-02
140GO:0006351: transcription, DNA-templated1.01E-02
141GO:0009664: plant-type cell wall organization1.05E-02
142GO:0048437: floral organ development1.09E-02
143GO:0010098: suspensor development1.09E-02
144GO:0015937: coenzyme A biosynthetic process1.09E-02
145GO:0010103: stomatal complex morphogenesis1.09E-02
146GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.09E-02
147GO:0010374: stomatal complex development1.09E-02
148GO:0006955: immune response1.09E-02
149GO:1900056: negative regulation of leaf senescence1.09E-02
150GO:0045892: negative regulation of transcription, DNA-templated1.10E-02
151GO:0048825: cotyledon development1.13E-02
152GO:0008380: RNA splicing1.26E-02
153GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.27E-02
154GO:0006402: mRNA catabolic process1.27E-02
155GO:0009787: regulation of abscisic acid-activated signaling pathway1.27E-02
156GO:0009642: response to light intensity1.27E-02
157GO:0048766: root hair initiation1.27E-02
158GO:0010492: maintenance of shoot apical meristem identity1.27E-02
159GO:0055075: potassium ion homeostasis1.27E-02
160GO:0000105: histidine biosynthetic process1.27E-02
161GO:0052543: callose deposition in cell wall1.27E-02
162GO:0010583: response to cyclopentenone1.29E-02
163GO:0019430: removal of superoxide radicals1.46E-02
164GO:0009827: plant-type cell wall modification1.46E-02
165GO:0007186: G-protein coupled receptor signaling pathway1.46E-02
166GO:0010052: guard cell differentiation1.46E-02
167GO:0010233: phloem transport1.46E-02
168GO:0010497: plasmodesmata-mediated intercellular transport1.46E-02
169GO:0009657: plastid organization1.46E-02
170GO:0032544: plastid translation1.46E-02
171GO:0006397: mRNA processing1.65E-02
172GO:0048507: meristem development1.66E-02
173GO:0048589: developmental growth1.66E-02
174GO:0000902: cell morphogenesis1.66E-02
175GO:0010029: regulation of seed germination1.86E-02
176GO:0042761: very long-chain fatty acid biosynthetic process1.87E-02
177GO:2000280: regulation of root development1.87E-02
178GO:0006349: regulation of gene expression by genetic imprinting1.87E-02
179GO:0031425: chloroplast RNA processing1.87E-02
180GO:0006396: RNA processing1.87E-02
181GO:0006535: cysteine biosynthetic process from serine2.09E-02
182GO:0045036: protein targeting to chloroplast2.09E-02
183GO:0009641: shade avoidance2.09E-02
184GO:0016441: posttranscriptional gene silencing2.09E-02
185GO:0010048: vernalization response2.09E-02
186GO:0048481: plant ovule development2.29E-02
187GO:0006355: regulation of transcription, DNA-templated2.29E-02
188GO:0009682: induced systemic resistance2.32E-02
189GO:0015770: sucrose transport2.32E-02
190GO:1903507: negative regulation of nucleic acid-templated transcription2.32E-02
191GO:0009750: response to fructose2.32E-02
192GO:0048765: root hair cell differentiation2.32E-02
193GO:0046856: phosphatidylinositol dephosphorylation2.32E-02
194GO:0010218: response to far red light2.53E-02
195GO:0006468: protein phosphorylation2.55E-02
196GO:0010152: pollen maturation2.56E-02
197GO:0010582: floral meristem determinacy2.56E-02
198GO:0008361: regulation of cell size2.56E-02
199GO:0006790: sulfur compound metabolic process2.56E-02
200GO:0012501: programmed cell death2.56E-02
201GO:0009845: seed germination2.64E-02
202GO:0006865: amino acid transport2.78E-02
203GO:0010102: lateral root morphogenesis2.80E-02
204GO:0009691: cytokinin biosynthetic process2.80E-02
205GO:0009790: embryo development2.90E-02
206GO:0009867: jasmonic acid mediated signaling pathway2.91E-02
207GO:0010020: chloroplast fission3.05E-02
208GO:0009933: meristem structural organization3.05E-02
209GO:0006270: DNA replication initiation3.05E-02
210GO:0009887: animal organ morphogenesis3.05E-02
211GO:0048467: gynoecium development3.05E-02
212GO:0009825: multidimensional cell growth3.31E-02
213GO:0009901: anther dehiscence3.31E-02
214GO:0046854: phosphatidylinositol phosphorylation3.31E-02
215GO:0006636: unsaturated fatty acid biosynthetic process3.58E-02
216GO:0006833: water transport3.58E-02
217GO:0009863: salicylic acid mediated signaling pathway3.85E-02
218GO:0010187: negative regulation of seed germination3.85E-02
219GO:0019344: cysteine biosynthetic process3.85E-02
220GO:0009739: response to gibberellin4.10E-02
221GO:0006874: cellular calcium ion homeostasis4.13E-02
222GO:0010073: meristem maintenance4.13E-02
223GO:0006825: copper ion transport4.13E-02
224GO:0051302: regulation of cell division4.13E-02
225GO:0019953: sexual reproduction4.13E-02
226GO:0032259: methylation4.27E-02
227GO:0016042: lipid catabolic process4.36E-02
228GO:0016998: cell wall macromolecule catabolic process4.42E-02
229GO:0010431: seed maturation4.42E-02
230GO:0031347: regulation of defense response4.53E-02
231GO:0006260: DNA replication4.53E-02
232GO:0030245: cellulose catabolic process4.71E-02
233GO:0048364: root development4.83E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0004141: dethiobiotin synthase activity0.00E+00
3GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004401: histidinol-phosphatase activity0.00E+00
6GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
9GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
10GO:0008859: exoribonuclease II activity0.00E+00
11GO:0003723: RNA binding2.97E-05
12GO:0003727: single-stranded RNA binding1.19E-04
13GO:0004930: G-protein coupled receptor activity2.29E-04
14GO:0008725: DNA-3-methyladenine glycosylase activity3.45E-04
15GO:0042834: peptidoglycan binding6.81E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.81E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.81E-04
18GO:0016274: protein-arginine N-methyltransferase activity6.81E-04
19GO:0008395: steroid hydroxylase activity6.81E-04
20GO:0052381: tRNA dimethylallyltransferase activity6.81E-04
21GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.81E-04
22GO:0004654: polyribonucleotide nucleotidyltransferase activity6.81E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity6.81E-04
24GO:0004016: adenylate cyclase activity6.81E-04
25GO:1905201: gibberellin transmembrane transporter activity6.81E-04
26GO:0004632: phosphopantothenate--cysteine ligase activity6.81E-04
27GO:0008173: RNA methyltransferase activity1.23E-03
28GO:0019843: rRNA binding1.39E-03
29GO:0008934: inositol monophosphate 1-phosphatase activity1.47E-03
30GO:0052833: inositol monophosphate 4-phosphatase activity1.47E-03
31GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.47E-03
32GO:0005078: MAP-kinase scaffold activity1.47E-03
33GO:0009884: cytokinin receptor activity1.47E-03
34GO:0032454: histone demethylase activity (H3-K9 specific)1.47E-03
35GO:0042389: omega-3 fatty acid desaturase activity1.47E-03
36GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.47E-03
37GO:0052832: inositol monophosphate 3-phosphatase activity1.47E-03
38GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.47E-03
39GO:0004519: endonuclease activity1.79E-03
40GO:0017150: tRNA dihydrouridine synthase activity2.43E-03
41GO:0042781: 3'-tRNA processing endoribonuclease activity2.43E-03
42GO:0016805: dipeptidase activity2.43E-03
43GO:0005034: osmosensor activity2.43E-03
44GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.43E-03
45GO:0003725: double-stranded RNA binding3.08E-03
46GO:0000175: 3'-5'-exoribonuclease activity3.08E-03
47GO:0009041: uridylate kinase activity3.53E-03
48GO:0003883: CTP synthase activity3.53E-03
49GO:0001872: (1->3)-beta-D-glucan binding3.53E-03
50GO:0004222: metalloendopeptidase activity4.72E-03
51GO:0010328: auxin influx transmembrane transporter activity4.76E-03
52GO:0010011: auxin binding4.76E-03
53GO:0008168: methyltransferase activity4.99E-03
54GO:0003700: transcription factor activity, sequence-specific DNA binding5.47E-03
55GO:0004888: transmembrane signaling receptor activity6.12E-03
56GO:0043565: sequence-specific DNA binding6.82E-03
57GO:0030570: pectate lyase activity7.05E-03
58GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity7.60E-03
59GO:0004784: superoxide dismutase activity7.60E-03
60GO:0003688: DNA replication origin binding7.60E-03
61GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.20E-03
62GO:0004747: ribokinase activity9.20E-03
63GO:0019900: kinase binding9.20E-03
64GO:0004124: cysteine synthase activity9.20E-03
65GO:0008289: lipid binding9.31E-03
66GO:0030515: snoRNA binding1.09E-02
67GO:0019901: protein kinase binding1.13E-02
68GO:0003690: double-stranded DNA binding1.20E-02
69GO:0003677: DNA binding1.25E-02
70GO:0008865: fructokinase activity1.27E-02
71GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.46E-02
72GO:0003724: RNA helicase activity1.46E-02
73GO:0000989: transcription factor activity, transcription factor binding1.66E-02
74GO:0009672: auxin:proton symporter activity1.87E-02
75GO:0031490: chromatin DNA binding1.87E-02
76GO:0016788: hydrolase activity, acting on ester bonds1.93E-02
77GO:0004673: protein histidine kinase activity2.09E-02
78GO:0008515: sucrose transmembrane transporter activity2.32E-02
79GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.56E-02
80GO:0000976: transcription regulatory region sequence-specific DNA binding2.56E-02
81GO:0010329: auxin efflux transmembrane transporter activity2.80E-02
82GO:0004022: alcohol dehydrogenase (NAD) activity2.80E-02
83GO:0031072: heat shock protein binding2.80E-02
84GO:0000155: phosphorelay sensor kinase activity2.80E-02
85GO:0009982: pseudouridine synthase activity2.80E-02
86GO:0052689: carboxylic ester hydrolase activity2.99E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.05E-02
88GO:0003712: transcription cofactor activity3.31E-02
89GO:0004970: ionotropic glutamate receptor activity3.31E-02
90GO:0051119: sugar transmembrane transporter activity3.31E-02
91GO:0005217: intracellular ligand-gated ion channel activity3.31E-02
92GO:0004190: aspartic-type endopeptidase activity3.31E-02
93GO:0042803: protein homodimerization activity3.60E-02
94GO:0004871: signal transducer activity3.60E-02
95GO:0003714: transcription corepressor activity3.85E-02
96GO:0043621: protein self-association4.05E-02
97GO:0043424: protein histidine kinase binding4.13E-02
98GO:0015293: symporter activity4.21E-02
99GO:0004540: ribonuclease activity4.42E-02
100GO:0004674: protein serine/threonine kinase activity4.65E-02
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Gene type



Gene DE type