GO Enrichment Analysis of Co-expressed Genes with
AT3G58100
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 2 | GO:1905177: tracheary element differentiation | 0.00E+00 |
| 3 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 4 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 5 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 7 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 8 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 9 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 10 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 11 | GO:0009657: plastid organization | 8.20E-06 |
| 12 | GO:0006418: tRNA aminoacylation for protein translation | 9.59E-05 |
| 13 | GO:0042371: vitamin K biosynthetic process | 2.63E-04 |
| 14 | GO:0035987: endodermal cell differentiation | 2.63E-04 |
| 15 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.63E-04 |
| 16 | GO:0015904: tetracycline transport | 2.63E-04 |
| 17 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.63E-04 |
| 18 | GO:0042659: regulation of cell fate specification | 2.63E-04 |
| 19 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 2.63E-04 |
| 20 | GO:1901537: positive regulation of DNA demethylation | 2.63E-04 |
| 21 | GO:0090558: plant epidermis development | 2.63E-04 |
| 22 | GO:0070509: calcium ion import | 2.63E-04 |
| 23 | GO:0000373: Group II intron splicing | 3.70E-04 |
| 24 | GO:0018026: peptidyl-lysine monomethylation | 5.78E-04 |
| 25 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 5.78E-04 |
| 26 | GO:2000123: positive regulation of stomatal complex development | 5.78E-04 |
| 27 | GO:0060359: response to ammonium ion | 5.78E-04 |
| 28 | GO:0045037: protein import into chloroplast stroma | 6.76E-04 |
| 29 | GO:0010207: photosystem II assembly | 8.62E-04 |
| 30 | GO:0010623: programmed cell death involved in cell development | 9.39E-04 |
| 31 | GO:0001578: microtubule bundle formation | 9.39E-04 |
| 32 | GO:0043157: response to cation stress | 9.39E-04 |
| 33 | GO:0045910: negative regulation of DNA recombination | 9.39E-04 |
| 34 | GO:0048281: inflorescence morphogenesis | 9.39E-04 |
| 35 | GO:0090708: specification of plant organ axis polarity | 9.39E-04 |
| 36 | GO:0051302: regulation of cell division | 1.30E-03 |
| 37 | GO:0046739: transport of virus in multicellular host | 1.34E-03 |
| 38 | GO:2000904: regulation of starch metabolic process | 1.34E-03 |
| 39 | GO:0051289: protein homotetramerization | 1.34E-03 |
| 40 | GO:1902476: chloride transmembrane transport | 1.34E-03 |
| 41 | GO:0051513: regulation of monopolar cell growth | 1.34E-03 |
| 42 | GO:0044211: CTP salvage | 1.34E-03 |
| 43 | GO:0019048: modulation by virus of host morphology or physiology | 1.34E-03 |
| 44 | GO:0031048: chromatin silencing by small RNA | 1.34E-03 |
| 45 | GO:0010148: transpiration | 1.34E-03 |
| 46 | GO:0006730: one-carbon metabolic process | 1.56E-03 |
| 47 | GO:0009664: plant-type cell wall organization | 1.68E-03 |
| 48 | GO:0044205: 'de novo' UMP biosynthetic process | 1.79E-03 |
| 49 | GO:0006808: regulation of nitrogen utilization | 1.79E-03 |
| 50 | GO:0051322: anaphase | 1.79E-03 |
| 51 | GO:0051567: histone H3-K9 methylation | 1.79E-03 |
| 52 | GO:0030104: water homeostasis | 1.79E-03 |
| 53 | GO:0010508: positive regulation of autophagy | 1.79E-03 |
| 54 | GO:0044206: UMP salvage | 1.79E-03 |
| 55 | GO:2000038: regulation of stomatal complex development | 1.79E-03 |
| 56 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.92E-03 |
| 57 | GO:0009658: chloroplast organization | 2.10E-03 |
| 58 | GO:0032543: mitochondrial translation | 2.29E-03 |
| 59 | GO:0010236: plastoquinone biosynthetic process | 2.29E-03 |
| 60 | GO:0016123: xanthophyll biosynthetic process | 2.29E-03 |
| 61 | GO:0010158: abaxial cell fate specification | 2.29E-03 |
| 62 | GO:0010375: stomatal complex patterning | 2.29E-03 |
| 63 | GO:0005975: carbohydrate metabolic process | 2.59E-03 |
| 64 | GO:0016458: gene silencing | 2.82E-03 |
| 65 | GO:0050665: hydrogen peroxide biosynthetic process | 2.82E-03 |
| 66 | GO:0010405: arabinogalactan protein metabolic process | 2.82E-03 |
| 67 | GO:0009959: negative gravitropism | 2.82E-03 |
| 68 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.82E-03 |
| 69 | GO:0006206: pyrimidine nucleobase metabolic process | 2.82E-03 |
| 70 | GO:0042793: transcription from plastid promoter | 2.82E-03 |
| 71 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.82E-03 |
| 72 | GO:0010583: response to cyclopentenone | 3.06E-03 |
| 73 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.07E-03 |
| 74 | GO:0009942: longitudinal axis specification | 3.40E-03 |
| 75 | GO:0030488: tRNA methylation | 3.40E-03 |
| 76 | GO:0009854: oxidative photosynthetic carbon pathway | 3.40E-03 |
| 77 | GO:2000067: regulation of root morphogenesis | 3.40E-03 |
| 78 | GO:0042372: phylloquinone biosynthetic process | 3.40E-03 |
| 79 | GO:0009828: plant-type cell wall loosening | 3.47E-03 |
| 80 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 4.00E-03 |
| 81 | GO:0010444: guard mother cell differentiation | 4.00E-03 |
| 82 | GO:0010103: stomatal complex morphogenesis | 4.00E-03 |
| 83 | GO:0048528: post-embryonic root development | 4.00E-03 |
| 84 | GO:0009772: photosynthetic electron transport in photosystem II | 4.00E-03 |
| 85 | GO:0010050: vegetative phase change | 4.00E-03 |
| 86 | GO:0006821: chloride transport | 4.00E-03 |
| 87 | GO:0070370: cellular heat acclimation | 4.00E-03 |
| 88 | GO:0010027: thylakoid membrane organization | 4.14E-03 |
| 89 | GO:0070413: trehalose metabolism in response to stress | 4.65E-03 |
| 90 | GO:0009850: auxin metabolic process | 4.65E-03 |
| 91 | GO:0055075: potassium ion homeostasis | 4.65E-03 |
| 92 | GO:0048564: photosystem I assembly | 4.65E-03 |
| 93 | GO:0046620: regulation of organ growth | 4.65E-03 |
| 94 | GO:0009790: embryo development | 4.67E-03 |
| 95 | GO:0010204: defense response signaling pathway, resistance gene-independent | 5.32E-03 |
| 96 | GO:0007389: pattern specification process | 5.32E-03 |
| 97 | GO:0009827: plant-type cell wall modification | 5.32E-03 |
| 98 | GO:0001558: regulation of cell growth | 5.32E-03 |
| 99 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.32E-03 |
| 100 | GO:0000902: cell morphogenesis | 6.03E-03 |
| 101 | GO:0006098: pentose-phosphate shunt | 6.03E-03 |
| 102 | GO:0009638: phototropism | 6.77E-03 |
| 103 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 6.77E-03 |
| 104 | GO:2000280: regulation of root development | 6.77E-03 |
| 105 | GO:0006535: cysteine biosynthetic process from serine | 7.54E-03 |
| 106 | GO:0030422: production of siRNA involved in RNA interference | 7.54E-03 |
| 107 | GO:0045036: protein targeting to chloroplast | 7.54E-03 |
| 108 | GO:0006298: mismatch repair | 7.54E-03 |
| 109 | GO:0006949: syncytium formation | 7.54E-03 |
| 110 | GO:0006259: DNA metabolic process | 7.54E-03 |
| 111 | GO:0006265: DNA topological change | 8.35E-03 |
| 112 | GO:0009089: lysine biosynthetic process via diaminopimelate | 8.35E-03 |
| 113 | GO:0009926: auxin polar transport | 8.82E-03 |
| 114 | GO:0010582: floral meristem determinacy | 9.17E-03 |
| 115 | GO:0016024: CDP-diacylglycerol biosynthetic process | 9.17E-03 |
| 116 | GO:0009691: cytokinin biosynthetic process | 1.00E-02 |
| 117 | GO:0050826: response to freezing | 1.00E-02 |
| 118 | GO:0006094: gluconeogenesis | 1.00E-02 |
| 119 | GO:0009767: photosynthetic electron transport chain | 1.00E-02 |
| 120 | GO:0009785: blue light signaling pathway | 1.00E-02 |
| 121 | GO:0006508: proteolysis | 1.18E-02 |
| 122 | GO:0070588: calcium ion transmembrane transport | 1.18E-02 |
| 123 | GO:0009416: response to light stimulus | 1.26E-02 |
| 124 | GO:0006833: water transport | 1.28E-02 |
| 125 | GO:0005992: trehalose biosynthetic process | 1.38E-02 |
| 126 | GO:0019344: cysteine biosynthetic process | 1.38E-02 |
| 127 | GO:0009116: nucleoside metabolic process | 1.38E-02 |
| 128 | GO:0030150: protein import into mitochondrial matrix | 1.38E-02 |
| 129 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.38E-02 |
| 130 | GO:0007010: cytoskeleton organization | 1.38E-02 |
| 131 | GO:0009733: response to auxin | 1.41E-02 |
| 132 | GO:0006825: copper ion transport | 1.48E-02 |
| 133 | GO:0019953: sexual reproduction | 1.48E-02 |
| 134 | GO:0015992: proton transport | 1.58E-02 |
| 135 | GO:0006306: DNA methylation | 1.58E-02 |
| 136 | GO:0019748: secondary metabolic process | 1.68E-02 |
| 137 | GO:0010082: regulation of root meristem growth | 1.79E-02 |
| 138 | GO:0001944: vasculature development | 1.79E-02 |
| 139 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.79E-02 |
| 140 | GO:0009686: gibberellin biosynthetic process | 1.79E-02 |
| 141 | GO:0010089: xylem development | 1.90E-02 |
| 142 | GO:0008033: tRNA processing | 2.13E-02 |
| 143 | GO:0000226: microtubule cytoskeleton organization | 2.13E-02 |
| 144 | GO:0006662: glycerol ether metabolic process | 2.24E-02 |
| 145 | GO:0006342: chromatin silencing | 2.24E-02 |
| 146 | GO:0010268: brassinosteroid homeostasis | 2.24E-02 |
| 147 | GO:0009058: biosynthetic process | 2.25E-02 |
| 148 | GO:0048544: recognition of pollen | 2.36E-02 |
| 149 | GO:0007059: chromosome segregation | 2.36E-02 |
| 150 | GO:0008654: phospholipid biosynthetic process | 2.48E-02 |
| 151 | GO:0009851: auxin biosynthetic process | 2.48E-02 |
| 152 | GO:0016132: brassinosteroid biosynthetic process | 2.61E-02 |
| 153 | GO:0071554: cell wall organization or biogenesis | 2.61E-02 |
| 154 | GO:0002229: defense response to oomycetes | 2.61E-02 |
| 155 | GO:0009630: gravitropism | 2.73E-02 |
| 156 | GO:1901657: glycosyl compound metabolic process | 2.86E-02 |
| 157 | GO:0016125: sterol metabolic process | 2.99E-02 |
| 158 | GO:0010252: auxin homeostasis | 2.99E-02 |
| 159 | GO:0009451: RNA modification | 3.01E-02 |
| 160 | GO:0007267: cell-cell signaling | 3.12E-02 |
| 161 | GO:0051607: defense response to virus | 3.25E-02 |
| 162 | GO:0000910: cytokinesis | 3.25E-02 |
| 163 | GO:0009739: response to gibberellin | 3.29E-02 |
| 164 | GO:0009734: auxin-activated signaling pathway | 3.33E-02 |
| 165 | GO:0001666: response to hypoxia | 3.39E-02 |
| 166 | GO:0009816: defense response to bacterium, incompatible interaction | 3.52E-02 |
| 167 | GO:0071555: cell wall organization | 3.59E-02 |
| 168 | GO:0048481: plant ovule development | 4.09E-02 |
| 169 | GO:0000160: phosphorelay signal transduction system | 4.24E-02 |
| 170 | GO:0009826: unidimensional cell growth | 4.37E-02 |
| 171 | GO:0042254: ribosome biogenesis | 4.62E-02 |
| 172 | GO:0034599: cellular response to oxidative stress | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 2 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 4 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 7 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 8 | GO:0004812: aminoacyl-tRNA ligase activity | 1.83E-04 |
| 9 | GO:0052381: tRNA dimethylallyltransferase activity | 2.63E-04 |
| 10 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 2.63E-04 |
| 11 | GO:0004830: tryptophan-tRNA ligase activity | 2.63E-04 |
| 12 | GO:0010285: L,L-diaminopimelate aminotransferase activity | 2.63E-04 |
| 13 | GO:0005227: calcium activated cation channel activity | 2.63E-04 |
| 14 | GO:0004008: copper-exporting ATPase activity | 2.63E-04 |
| 15 | GO:0051777: ent-kaurenoate oxidase activity | 2.63E-04 |
| 16 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 5.78E-04 |
| 17 | GO:0008493: tetracycline transporter activity | 5.78E-04 |
| 18 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.62E-04 |
| 19 | GO:0017150: tRNA dihydrouridine synthase activity | 9.39E-04 |
| 20 | GO:0002161: aminoacyl-tRNA editing activity | 9.39E-04 |
| 21 | GO:0004185: serine-type carboxypeptidase activity | 1.26E-03 |
| 22 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 1.34E-03 |
| 23 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 1.34E-03 |
| 24 | GO:0001872: (1->3)-beta-D-glucan binding | 1.34E-03 |
| 25 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 1.34E-03 |
| 26 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 1.34E-03 |
| 27 | GO:0035197: siRNA binding | 1.34E-03 |
| 28 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.51E-03 |
| 29 | GO:0004930: G-protein coupled receptor activity | 1.79E-03 |
| 30 | GO:0005253: anion channel activity | 1.79E-03 |
| 31 | GO:0042277: peptide binding | 1.79E-03 |
| 32 | GO:0008891: glycolate oxidase activity | 1.79E-03 |
| 33 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.79E-03 |
| 34 | GO:0004659: prenyltransferase activity | 1.79E-03 |
| 35 | GO:0016279: protein-lysine N-methyltransferase activity | 1.79E-03 |
| 36 | GO:0004845: uracil phosphoribosyltransferase activity | 1.79E-03 |
| 37 | GO:0019199: transmembrane receptor protein kinase activity | 1.79E-03 |
| 38 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 2.29E-03 |
| 39 | GO:0004888: transmembrane signaling receptor activity | 2.29E-03 |
| 40 | GO:0005247: voltage-gated chloride channel activity | 2.82E-03 |
| 41 | GO:0030983: mismatched DNA binding | 2.82E-03 |
| 42 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.82E-03 |
| 43 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.82E-03 |
| 44 | GO:0004332: fructose-bisphosphate aldolase activity | 2.82E-03 |
| 45 | GO:0004124: cysteine synthase activity | 3.40E-03 |
| 46 | GO:0008195: phosphatidate phosphatase activity | 3.40E-03 |
| 47 | GO:0004849: uridine kinase activity | 3.40E-03 |
| 48 | GO:0019899: enzyme binding | 4.00E-03 |
| 49 | GO:0004427: inorganic diphosphatase activity | 4.00E-03 |
| 50 | GO:0043022: ribosome binding | 4.65E-03 |
| 51 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 5.32E-03 |
| 52 | GO:0005375: copper ion transmembrane transporter activity | 5.32E-03 |
| 53 | GO:0004222: metalloendopeptidase activity | 5.95E-03 |
| 54 | GO:0009672: auxin:proton symporter activity | 6.77E-03 |
| 55 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 6.83E-03 |
| 56 | GO:0004805: trehalose-phosphatase activity | 7.54E-03 |
| 57 | GO:0008327: methyl-CpG binding | 8.35E-03 |
| 58 | GO:0004521: endoribonuclease activity | 9.17E-03 |
| 59 | GO:0004089: carbonate dehydratase activity | 1.00E-02 |
| 60 | GO:0005262: calcium channel activity | 1.00E-02 |
| 61 | GO:0004565: beta-galactosidase activity | 1.00E-02 |
| 62 | GO:0010329: auxin efflux transmembrane transporter activity | 1.00E-02 |
| 63 | GO:0015266: protein channel activity | 1.00E-02 |
| 64 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 1.00E-02 |
| 65 | GO:0004650: polygalacturonase activity | 1.55E-02 |
| 66 | GO:0003964: RNA-directed DNA polymerase activity | 1.58E-02 |
| 67 | GO:0008408: 3'-5' exonuclease activity | 1.58E-02 |
| 68 | GO:0022891: substrate-specific transmembrane transporter activity | 1.79E-02 |
| 69 | GO:0047134: protein-disulfide reductase activity | 2.01E-02 |
| 70 | GO:0004527: exonuclease activity | 2.24E-02 |
| 71 | GO:0004791: thioredoxin-disulfide reductase activity | 2.36E-02 |
| 72 | GO:0010181: FMN binding | 2.36E-02 |
| 73 | GO:0004519: endonuclease activity | 2.41E-02 |
| 74 | GO:0019901: protein kinase binding | 2.48E-02 |
| 75 | GO:0004518: nuclease activity | 2.73E-02 |
| 76 | GO:0000156: phosphorelay response regulator activity | 2.86E-02 |
| 77 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.86E-02 |
| 78 | GO:0051015: actin filament binding | 2.86E-02 |
| 79 | GO:0003684: damaged DNA binding | 2.99E-02 |
| 80 | GO:0016791: phosphatase activity | 2.99E-02 |
| 81 | GO:0008017: microtubule binding | 3.08E-02 |
| 82 | GO:0008483: transaminase activity | 3.12E-02 |
| 83 | GO:0016413: O-acetyltransferase activity | 3.25E-02 |
| 84 | GO:0016597: amino acid binding | 3.25E-02 |
| 85 | GO:0030247: polysaccharide binding | 3.80E-02 |
| 86 | GO:0102483: scopolin beta-glucosidase activity | 3.80E-02 |
| 87 | GO:0008236: serine-type peptidase activity | 3.95E-02 |
| 88 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.09E-02 |
| 89 | GO:0030145: manganese ion binding | 4.53E-02 |
| 90 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.53E-02 |
| 91 | GO:0003746: translation elongation factor activity | 4.84E-02 |
| 92 | GO:0003993: acid phosphatase activity | 4.99E-02 |