GO Enrichment Analysis of Co-expressed Genes with
AT3G57060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017038: protein import | 0.00E+00 |
| 2 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 3 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 4 | GO:0042817: pyridoxal metabolic process | 0.00E+00 |
| 5 | GO:0008618: 7-methylguanosine metabolic process | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 8 | GO:0036265: RNA (guanine-N7)-methylation | 0.00E+00 |
| 9 | GO:0042407: cristae formation | 0.00E+00 |
| 10 | GO:0006400: tRNA modification | 1.91E-07 |
| 11 | GO:0009658: chloroplast organization | 5.58E-07 |
| 12 | GO:0090351: seedling development | 3.86E-06 |
| 13 | GO:0071482: cellular response to light stimulus | 5.02E-05 |
| 14 | GO:0071028: nuclear mRNA surveillance | 7.90E-05 |
| 15 | GO:0006659: phosphatidylserine biosynthetic process | 7.90E-05 |
| 16 | GO:1902458: positive regulation of stomatal opening | 7.90E-05 |
| 17 | GO:0006747: FAD biosynthetic process | 7.90E-05 |
| 18 | GO:0006419: alanyl-tRNA aminoacylation | 7.90E-05 |
| 19 | GO:0006352: DNA-templated transcription, initiation | 1.08E-04 |
| 20 | GO:0009793: embryo development ending in seed dormancy | 1.41E-04 |
| 21 | GO:0010020: chloroplast fission | 1.65E-04 |
| 22 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.89E-04 |
| 23 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 1.89E-04 |
| 24 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 1.89E-04 |
| 25 | GO:0031125: rRNA 3'-end processing | 1.89E-04 |
| 26 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 1.89E-04 |
| 27 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 1.89E-04 |
| 28 | GO:0006739: NADP metabolic process | 1.89E-04 |
| 29 | GO:0034475: U4 snRNA 3'-end processing | 1.89E-04 |
| 30 | GO:0060359: response to ammonium ion | 1.89E-04 |
| 31 | GO:0001578: microtubule bundle formation | 3.17E-04 |
| 32 | GO:0043157: response to cation stress | 3.17E-04 |
| 33 | GO:2001295: malonyl-CoA biosynthetic process | 3.17E-04 |
| 34 | GO:0016075: rRNA catabolic process | 3.17E-04 |
| 35 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 3.17E-04 |
| 36 | GO:0019419: sulfate reduction | 3.17E-04 |
| 37 | GO:0006164: purine nucleotide biosynthetic process | 4.58E-04 |
| 38 | GO:0008615: pyridoxine biosynthetic process | 4.58E-04 |
| 39 | GO:2001141: regulation of RNA biosynthetic process | 4.58E-04 |
| 40 | GO:0009102: biotin biosynthetic process | 4.58E-04 |
| 41 | GO:0007020: microtubule nucleation | 6.09E-04 |
| 42 | GO:0010107: potassium ion import | 6.09E-04 |
| 43 | GO:0006021: inositol biosynthetic process | 6.09E-04 |
| 44 | GO:0071483: cellular response to blue light | 6.09E-04 |
| 45 | GO:0006734: NADH metabolic process | 6.09E-04 |
| 46 | GO:0044205: 'de novo' UMP biosynthetic process | 6.09E-04 |
| 47 | GO:0010109: regulation of photosynthesis | 6.09E-04 |
| 48 | GO:0051322: anaphase | 6.09E-04 |
| 49 | GO:0046785: microtubule polymerization | 7.72E-04 |
| 50 | GO:0098719: sodium ion import across plasma membrane | 7.72E-04 |
| 51 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.72E-04 |
| 52 | GO:0010027: thylakoid membrane organization | 8.22E-04 |
| 53 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 9.42E-04 |
| 54 | GO:0009959: negative gravitropism | 9.42E-04 |
| 55 | GO:0015995: chlorophyll biosynthetic process | 9.59E-04 |
| 56 | GO:0009409: response to cold | 1.04E-03 |
| 57 | GO:0030488: tRNA methylation | 1.12E-03 |
| 58 | GO:0006508: proteolysis | 1.15E-03 |
| 59 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.31E-03 |
| 60 | GO:0015693: magnesium ion transport | 1.31E-03 |
| 61 | GO:0048528: post-embryonic root development | 1.31E-03 |
| 62 | GO:0006605: protein targeting | 1.51E-03 |
| 63 | GO:2000070: regulation of response to water deprivation | 1.51E-03 |
| 64 | GO:0055075: potassium ion homeostasis | 1.51E-03 |
| 65 | GO:0009231: riboflavin biosynthetic process | 1.51E-03 |
| 66 | GO:0052543: callose deposition in cell wall | 1.51E-03 |
| 67 | GO:0048564: photosystem I assembly | 1.51E-03 |
| 68 | GO:0009657: plastid organization | 1.72E-03 |
| 69 | GO:0009932: cell tip growth | 1.72E-03 |
| 70 | GO:0010206: photosystem II repair | 1.95E-03 |
| 71 | GO:0090333: regulation of stomatal closure | 1.95E-03 |
| 72 | GO:0051453: regulation of intracellular pH | 2.18E-03 |
| 73 | GO:0005982: starch metabolic process | 2.18E-03 |
| 74 | GO:0043067: regulation of programmed cell death | 2.18E-03 |
| 75 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.18E-03 |
| 76 | GO:0000103: sulfate assimilation | 2.41E-03 |
| 77 | GO:0006949: syncytium formation | 2.41E-03 |
| 78 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.41E-03 |
| 79 | GO:1903507: negative regulation of nucleic acid-templated transcription | 2.66E-03 |
| 80 | GO:0016485: protein processing | 2.66E-03 |
| 81 | GO:0010015: root morphogenesis | 2.66E-03 |
| 82 | GO:0045037: protein import into chloroplast stroma | 2.92E-03 |
| 83 | GO:0050826: response to freezing | 3.18E-03 |
| 84 | GO:0010207: photosystem II assembly | 3.45E-03 |
| 85 | GO:0019344: cysteine biosynthetic process | 4.31E-03 |
| 86 | GO:0009116: nucleoside metabolic process | 4.31E-03 |
| 87 | GO:0043622: cortical microtubule organization | 4.61E-03 |
| 88 | GO:0007017: microtubule-based process | 4.61E-03 |
| 89 | GO:0006633: fatty acid biosynthetic process | 5.03E-03 |
| 90 | GO:0006730: one-carbon metabolic process | 5.24E-03 |
| 91 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 5.24E-03 |
| 92 | GO:0009416: response to light stimulus | 5.39E-03 |
| 93 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.56E-03 |
| 94 | GO:0009306: protein secretion | 5.89E-03 |
| 95 | GO:0006885: regulation of pH | 6.92E-03 |
| 96 | GO:0010197: polar nucleus fusion | 6.92E-03 |
| 97 | GO:0006814: sodium ion transport | 7.28E-03 |
| 98 | GO:0009646: response to absence of light | 7.28E-03 |
| 99 | GO:0008654: phospholipid biosynthetic process | 7.64E-03 |
| 100 | GO:0009791: post-embryonic development | 7.64E-03 |
| 101 | GO:0009630: gravitropism | 8.39E-03 |
| 102 | GO:0010090: trichome morphogenesis | 8.77E-03 |
| 103 | GO:0030163: protein catabolic process | 8.77E-03 |
| 104 | GO:0009828: plant-type cell wall loosening | 9.16E-03 |
| 105 | GO:0071805: potassium ion transmembrane transport | 9.56E-03 |
| 106 | GO:0000910: cytokinesis | 9.96E-03 |
| 107 | GO:0016126: sterol biosynthetic process | 1.04E-02 |
| 108 | GO:0080167: response to karrikin | 1.06E-02 |
| 109 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.10E-02 |
| 110 | GO:0018298: protein-chromophore linkage | 1.25E-02 |
| 111 | GO:0009637: response to blue light | 1.48E-02 |
| 112 | GO:0009853: photorespiration | 1.48E-02 |
| 113 | GO:0008283: cell proliferation | 1.77E-02 |
| 114 | GO:0010114: response to red light | 1.77E-02 |
| 115 | GO:0031347: regulation of defense response | 2.02E-02 |
| 116 | GO:0006812: cation transport | 2.08E-02 |
| 117 | GO:0009664: plant-type cell wall organization | 2.08E-02 |
| 118 | GO:0006364: rRNA processing | 2.19E-02 |
| 119 | GO:0006813: potassium ion transport | 2.19E-02 |
| 120 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.24E-02 |
| 121 | GO:0046686: response to cadmium ion | 2.31E-02 |
| 122 | GO:0048367: shoot system development | 2.52E-02 |
| 123 | GO:0006396: RNA processing | 2.87E-02 |
| 124 | GO:0045893: positive regulation of transcription, DNA-templated | 3.20E-02 |
| 125 | GO:0009845: seed germination | 3.49E-02 |
| 126 | GO:0009790: embryo development | 3.68E-02 |
| 127 | GO:0016036: cellular response to phosphate starvation | 3.94E-02 |
| 128 | GO:0006413: translational initiation | 3.94E-02 |
| 129 | GO:0007623: circadian rhythm | 4.14E-02 |
| 130 | GO:0045490: pectin catabolic process | 4.14E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 2 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 3 | GO:0008176: tRNA (guanine-N7-)-methyltransferase activity | 0.00E+00 |
| 4 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 5 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
| 6 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
| 7 | GO:0016851: magnesium chelatase activity | 3.15E-06 |
| 8 | GO:0001053: plastid sigma factor activity | 6.01E-06 |
| 9 | GO:0016987: sigma factor activity | 6.01E-06 |
| 10 | GO:0005525: GTP binding | 6.65E-06 |
| 11 | GO:0052856: NADHX epimerase activity | 7.90E-05 |
| 12 | GO:0052857: NADPHX epimerase activity | 7.90E-05 |
| 13 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 7.90E-05 |
| 14 | GO:0005227: calcium activated cation channel activity | 7.90E-05 |
| 15 | GO:0004733: pyridoxamine-phosphate oxidase activity | 7.90E-05 |
| 16 | GO:0004813: alanine-tRNA ligase activity | 7.90E-05 |
| 17 | GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.89E-04 |
| 18 | GO:0004512: inositol-3-phosphate synthase activity | 1.89E-04 |
| 19 | GO:0009973: adenylyl-sulfate reductase activity | 1.89E-04 |
| 20 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 1.89E-04 |
| 21 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 1.89E-04 |
| 22 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.89E-04 |
| 23 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 1.89E-04 |
| 24 | GO:0004817: cysteine-tRNA ligase activity | 1.89E-04 |
| 25 | GO:0003919: FMN adenylyltransferase activity | 1.89E-04 |
| 26 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 3.17E-04 |
| 27 | GO:0003913: DNA photolyase activity | 3.17E-04 |
| 28 | GO:0003924: GTPase activity | 4.19E-04 |
| 29 | GO:0001872: (1->3)-beta-D-glucan binding | 4.58E-04 |
| 30 | GO:0000254: C-4 methylsterol oxidase activity | 4.58E-04 |
| 31 | GO:0003989: acetyl-CoA carboxylase activity | 7.72E-04 |
| 32 | GO:0015081: sodium ion transmembrane transporter activity | 9.42E-04 |
| 33 | GO:2001070: starch binding | 9.42E-04 |
| 34 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.12E-03 |
| 35 | GO:0004222: metalloendopeptidase activity | 1.16E-03 |
| 36 | GO:0009881: photoreceptor activity | 1.31E-03 |
| 37 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.50E-03 |
| 38 | GO:0043022: ribosome binding | 1.51E-03 |
| 39 | GO:0043621: protein self-association | 1.83E-03 |
| 40 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.27E-03 |
| 41 | GO:0008559: xenobiotic-transporting ATPase activity | 2.66E-03 |
| 42 | GO:0015386: potassium:proton antiporter activity | 2.66E-03 |
| 43 | GO:0000049: tRNA binding | 2.92E-03 |
| 44 | GO:0015095: magnesium ion transmembrane transporter activity | 3.18E-03 |
| 45 | GO:0000175: 3'-5'-exoribonuclease activity | 3.18E-03 |
| 46 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 4.02E-03 |
| 47 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 4.02E-03 |
| 48 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 4.02E-03 |
| 49 | GO:0003714: transcription corepressor activity | 4.31E-03 |
| 50 | GO:0004252: serine-type endopeptidase activity | 4.45E-03 |
| 51 | GO:0015079: potassium ion transmembrane transporter activity | 4.61E-03 |
| 52 | GO:0008408: 3'-5' exonuclease activity | 4.92E-03 |
| 53 | GO:0030570: pectate lyase activity | 5.56E-03 |
| 54 | GO:0010181: FMN binding | 7.28E-03 |
| 55 | GO:0015385: sodium:proton antiporter activity | 8.77E-03 |
| 56 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.77E-03 |
| 57 | GO:0005200: structural constituent of cytoskeleton | 9.56E-03 |
| 58 | GO:0008483: transaminase activity | 9.56E-03 |
| 59 | GO:0016597: amino acid binding | 9.96E-03 |
| 60 | GO:0030247: polysaccharide binding | 1.16E-02 |
| 61 | GO:0008236: serine-type peptidase activity | 1.21E-02 |
| 62 | GO:0003746: translation elongation factor activity | 1.48E-02 |
| 63 | GO:0004185: serine-type carboxypeptidase activity | 1.77E-02 |
| 64 | GO:0005524: ATP binding | 1.82E-02 |
| 65 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.87E-02 |
| 66 | GO:0016829: lyase activity | 3.49E-02 |
| 67 | GO:0030170: pyridoxal phosphate binding | 3.55E-02 |
| 68 | GO:0008565: protein transporter activity | 3.75E-02 |
| 69 | GO:0008017: microtubule binding | 4.28E-02 |
| 70 | GO:0003743: translation initiation factor activity | 4.63E-02 |
| 71 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.91E-02 |