co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0015979: photosynthesis	7.51E-16
7	GO:0009768: photosynthesis, light harvesting in photosystem I	5.54E-12
8	GO:0018298: protein-chromophore linkage	1.75E-09
9	GO:0010207: photosystem II assembly	1.08E-08
10	GO:0009645: response to low light intensity stimulus	1.97E-08
11	GO:0010114: response to red light	3.38E-07
12	GO:0015995: chlorophyll biosynthetic process	1.68E-06
13	GO:0010218: response to far red light	2.87E-06
14	GO:0009637: response to blue light	4.14E-06
15	GO:0090391: granum assembly	9.11E-06
16	GO:0009773: photosynthetic electron transport in photosystem I	1.94E-05
17	GO:0019253: reductive pentose-phosphate cycle	3.72E-05
18	GO:0006546: glycine catabolic process	3.78E-05
19	GO:0010600: regulation of auxin biosynthetic process	3.78E-05
20	GO:0010190: cytochrome b6f complex assembly	8.88E-05
21	GO:0055114: oxidation-reduction process	9.21E-05
22	GO:0010189: vitamin E biosynthetic process	1.23E-04
23	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.23E-04
24	GO:0006810: transport	1.24E-04
25	GO:0009644: response to high light intensity	1.36E-04
26	GO:0010196: nonphotochemical quenching	1.62E-04
27	GO:0009704: de-etiolation	2.06E-04
28	GO:0010928: regulation of auxin mediated signaling pathway	2.06E-04
29	GO:0046467: membrane lipid biosynthetic process	2.32E-04
30	GO:0080093: regulation of photorespiration	2.32E-04
31	GO:0031998: regulation of fatty acid beta-oxidation	2.32E-04
32	GO:0019510: S-adenosylhomocysteine catabolic process	2.32E-04
33	GO:0071277: cellular response to calcium ion	2.32E-04
34	GO:0032544: plastid translation	2.55E-04
35	GO:0009658: chloroplast organization	3.03E-04
36	GO:0010206: photosystem II repair	3.09E-04
37	GO:0018119: peptidyl-cysteine S-nitrosylation	4.97E-04
38	GO:0009735: response to cytokinin	5.09E-04
39	GO:0033353: S-adenosylmethionine cycle	5.15E-04
40	GO:0008616: queuosine biosynthetic process	5.15E-04
41	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.15E-04
42	GO:0042819: vitamin B6 biosynthetic process	5.15E-04
43	GO:0006094: gluconeogenesis	6.45E-04
44	GO:0034599: cellular response to oxidative stress	7.81E-04
45	GO:0006518: peptide metabolic process	8.37E-04
46	GO:0006081: cellular aldehyde metabolic process	8.37E-04
47	GO:0006000: fructose metabolic process	8.37E-04
48	GO:0006636: unsaturated fatty acid biosynthetic process	9.01E-04
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.19E-03
50	GO:0071484: cellular response to light intensity	1.19E-03
51	GO:0042823: pyridoxal phosphate biosynthetic process	1.19E-03
52	GO:0009409: response to cold	1.35E-03
53	GO:0015976: carbon utilization	1.59E-03
54	GO:0019464: glycine decarboxylation via glycine cleavage system	1.59E-03
55	GO:0009765: photosynthesis, light harvesting	1.59E-03
56	GO:0045727: positive regulation of translation	1.59E-03
57	GO:0015994: chlorophyll metabolic process	1.59E-03
58	GO:0006536: glutamate metabolic process	1.59E-03
59	GO:0006662: glycerol ether metabolic process	1.95E-03
60	GO:0006097: glyoxylate cycle	2.03E-03
61	GO:0035434: copper ion transmembrane transport	2.03E-03
62	GO:0009107: lipoate biosynthetic process	2.03E-03
63	GO:0006656: phosphatidylcholine biosynthetic process	2.03E-03
64	GO:0043097: pyrimidine nucleoside salvage	2.03E-03
65	GO:0019252: starch biosynthetic process	2.24E-03
66	GO:0042742: defense response to bacterium	2.46E-03
67	GO:0050665: hydrogen peroxide biosynthetic process	2.50E-03
68	GO:0042549: photosystem II stabilization	2.50E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	2.50E-03
70	GO:0045454: cell redox homeostasis	2.91E-03
71	GO:0009854: oxidative photosynthetic carbon pathway	3.00E-03
72	GO:0045926: negative regulation of growth	3.00E-03
73	GO:1900057: positive regulation of leaf senescence	3.54E-03
74	GO:0010161: red light signaling pathway	3.54E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	3.54E-03
76	GO:0032259: methylation	3.76E-03
77	GO:0009642: response to light intensity	4.10E-03
78	GO:0006002: fructose 6-phosphate metabolic process	4.70E-03
79	GO:0009657: plastid organization	4.70E-03
80	GO:0090333: regulation of stomatal closure	5.32E-03
81	GO:0006783: heme biosynthetic process	5.32E-03
82	GO:0006754: ATP biosynthetic process	5.32E-03
83	GO:0010205: photoinhibition	5.97E-03
84	GO:0006779: porphyrin-containing compound biosynthetic process	5.97E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	6.65E-03
86	GO:0043085: positive regulation of catalytic activity	7.35E-03
87	GO:0000272: polysaccharide catabolic process	7.35E-03
88	GO:0009698: phenylpropanoid metabolic process	7.35E-03
89	GO:0019684: photosynthesis, light reaction	7.35E-03
90	GO:0006108: malate metabolic process	8.84E-03
91	GO:0006006: glucose metabolic process	8.84E-03
92	GO:0009767: photosynthetic electron transport chain	8.84E-03
93	GO:0005986: sucrose biosynthetic process	8.84E-03
94	GO:0006807: nitrogen compound metabolic process	8.84E-03
95	GO:0009416: response to light stimulus	9.58E-03
96	GO:0009585: red, far-red light phototransduction	9.93E-03
97	GO:0007031: peroxisome organization	1.04E-02
98	GO:0006096: glycolytic process	1.18E-02
99	GO:0043086: negative regulation of catalytic activity	1.18E-02
100	GO:0006825: copper ion transport	1.30E-02
101	GO:0009269: response to desiccation	1.39E-02
102	GO:0031408: oxylipin biosynthetic process	1.39E-02
103	GO:0006396: RNA processing	1.46E-02
104	GO:0030433: ubiquitin-dependent ERAD pathway	1.48E-02
105	GO:0007005: mitochondrion organization	1.48E-02
106	GO:0010017: red or far-red light signaling pathway	1.48E-02
107	GO:0006730: one-carbon metabolic process	1.48E-02
108	GO:0006869: lipid transport	1.49E-02
109	GO:0009411: response to UV	1.57E-02
110	GO:0009625: response to insect	1.57E-02
111	GO:0009693: ethylene biosynthetic process	1.57E-02
112	GO:0019722: calcium-mediated signaling	1.67E-02
113	GO:0006606: protein import into nucleus	1.87E-02
114	GO:0042631: cellular response to water deprivation	1.87E-02
115	GO:0009741: response to brassinosteroid	1.97E-02
116	GO:0006814: sodium ion transport	2.07E-02
117	GO:0009646: response to absence of light	2.07E-02
118	GO:0019761: glucosinolate biosynthetic process	2.40E-02
119	GO:0010583: response to cyclopentenone	2.40E-02
120	GO:0007623: circadian rhythm	2.46E-02
121	GO:0030163: protein catabolic process	2.51E-02
122	GO:0007267: cell-cell signaling	2.74E-02
123	GO:0010027: thylakoid membrane organization	2.98E-02
124	GO:0042128: nitrate assimilation	3.22E-02
125	GO:0010411: xyloglucan metabolic process	3.34E-02
126	GO:0016311: dephosphorylation	3.47E-02
127	GO:0042254: ribosome biogenesis	3.86E-02
128	GO:0007568: aging	3.98E-02
129	GO:0016051: carbohydrate biosynthetic process	4.25E-02
130	GO:0009853: photorespiration	4.25E-02
131	GO:0006099: tricarboxylic acid cycle	4.39E-02
132	GO:0030001: metal ion transport	4.67E-02
133	GO:0080167: response to karrikin	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
3	GO:0008974: phosphoribulokinase activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0046408: chlorophyll synthetase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
8	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
9	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
10	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
11	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
12	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
13	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
14	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
15	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
16	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
17	GO:0045550: geranylgeranyl reductase activity	0.00E+00
18	GO:0031409: pigment binding	2.33E-12
19	GO:0016168: chlorophyll binding	7.77E-10
20	GO:0048038: quinone binding	1.30E-05
21	GO:0051537: 2 iron, 2 sulfur cluster binding	1.36E-04
22	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.32E-04
23	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.32E-04
24	GO:0004013: adenosylhomocysteinase activity	2.32E-04
25	GO:0016491: oxidoreductase activity	3.67E-04
26	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.15E-04
27	GO:0008883: glutamyl-tRNA reductase activity	5.15E-04
28	GO:0047746: chlorophyllase activity	5.15E-04
29	GO:0010297: heteropolysaccharide binding	5.15E-04
30	GO:0004047: aminomethyltransferase activity	5.15E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.15E-04
32	GO:0008479: queuine tRNA-ribosyltransferase activity	5.15E-04
33	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.15E-04
34	GO:0018708: thiol S-methyltransferase activity	5.15E-04
35	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	5.15E-04
36	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.15E-04
37	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	8.37E-04
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.37E-04
39	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.37E-04
40	GO:0016992: lipoate synthase activity	8.37E-04
41	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.19E-03
42	GO:0004351: glutamate decarboxylase activity	1.19E-03
43	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.19E-03
44	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.19E-03
45	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.19E-03
46	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.19E-03
47	GO:0008891: glycolate oxidase activity	1.59E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.59E-03
49	GO:0008453: alanine-glyoxylate transaminase activity	1.59E-03
50	GO:0052793: pectin acetylesterase activity	1.59E-03
51	GO:0009011: starch synthase activity	1.59E-03
52	GO:0047134: protein-disulfide reductase activity	1.67E-03
53	GO:0004791: thioredoxin-disulfide reductase activity	2.09E-03
54	GO:0015035: protein disulfide oxidoreductase activity	2.38E-03
55	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.50E-03
56	GO:0016615: malate dehydrogenase activity	2.50E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	2.50E-03
58	GO:0042578: phosphoric ester hydrolase activity	2.50E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.73E-03
60	GO:0030060: L-malate dehydrogenase activity	3.00E-03
61	GO:0004849: uridine kinase activity	3.00E-03
62	GO:0019843: rRNA binding	3.05E-03
63	GO:0005375: copper ion transmembrane transporter activity	4.70E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.70E-03
65	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.32E-03
66	GO:0003993: acid phosphatase activity	5.97E-03
67	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.97E-03
68	GO:0050661: NADP binding	6.50E-03
69	GO:0030234: enzyme regulator activity	6.65E-03
70	GO:0008047: enzyme activator activity	6.65E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	8.84E-03
72	GO:0004089: carbonate dehydratase activity	8.84E-03
73	GO:0031072: heat shock protein binding	8.84E-03
74	GO:0051287: NAD binding	8.91E-03
75	GO:0003735: structural constituent of ribosome	9.48E-03
76	GO:0003727: single-stranded RNA binding	1.67E-02
77	GO:0008514: organic anion transmembrane transporter activity	1.67E-02
78	GO:0009055: electron carrier activity	1.89E-02
79	GO:0008080: N-acetyltransferase activity	1.97E-02
80	GO:0050662: coenzyme binding	2.07E-02
81	GO:0016853: isomerase activity	2.07E-02
82	GO:0010181: FMN binding	2.07E-02
83	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.29E-02
84	GO:0046910: pectinesterase inhibitor activity	2.29E-02
85	GO:0008289: lipid binding	2.62E-02
86	GO:0016791: phosphatase activity	2.62E-02
87	GO:0008483: transaminase activity	2.74E-02
88	GO:0042802: identical protein binding	3.12E-02
89	GO:0004721: phosphoprotein phosphatase activity	3.34E-02
90	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.34E-02
91	GO:0046872: metal ion binding	3.49E-02
92	GO:0008168: methyltransferase activity	3.65E-02
93	GO:0004222: metalloendopeptidase activity	3.85E-02
94	GO:0030145: manganese ion binding	3.98E-02
95	GO:0003746: translation elongation factor activity	4.25E-02