Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56650

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0031054: pre-miRNA processing0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0009106: lipoate metabolic process0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0015882: L-ascorbic acid transport0.00E+00
15GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
16GO:0071474: cellular hyperosmotic response0.00E+00
17GO:0018023: peptidyl-lysine trimethylation0.00E+00
18GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
19GO:0070125: mitochondrial translational elongation0.00E+00
20GO:0034337: RNA folding0.00E+00
21GO:0015995: chlorophyll biosynthetic process2.18E-10
22GO:0010027: thylakoid membrane organization2.01E-06
23GO:0009658: chloroplast organization5.03E-06
24GO:0010207: photosystem II assembly1.53E-05
25GO:0015979: photosynthesis1.93E-05
26GO:0006783: heme biosynthetic process7.56E-05
27GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.03E-04
28GO:0006782: protoporphyrinogen IX biosynthetic process1.26E-04
29GO:0045038: protein import into chloroplast thylakoid membrane2.69E-04
30GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.77E-04
31GO:0010190: cytochrome b6f complex assembly3.77E-04
32GO:1901259: chloroplast rRNA processing5.01E-04
33GO:0048363: mucilage pectin metabolic process5.80E-04
34GO:0009443: pyridoxal 5'-phosphate salvage5.80E-04
35GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.80E-04
36GO:0031426: polycistronic mRNA processing5.80E-04
37GO:0043489: RNA stabilization5.80E-04
38GO:0015671: oxygen transport5.80E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process5.80E-04
40GO:0043953: protein transport by the Tat complex5.80E-04
41GO:0000481: maturation of 5S rRNA5.80E-04
42GO:1904964: positive regulation of phytol biosynthetic process5.80E-04
43GO:0065002: intracellular protein transmembrane transport5.80E-04
44GO:0043686: co-translational protein modification5.80E-04
45GO:1902458: positive regulation of stomatal opening5.80E-04
46GO:0010028: xanthophyll cycle5.80E-04
47GO:0009735: response to cytokinin7.91E-04
48GO:0016559: peroxisome fission7.99E-04
49GO:0048564: photosystem I assembly7.99E-04
50GO:0006605: protein targeting7.99E-04
51GO:0055114: oxidation-reduction process9.29E-04
52GO:0071482: cellular response to light stimulus9.71E-04
53GO:0032544: plastid translation9.71E-04
54GO:0010206: photosystem II repair1.16E-03
55GO:0051262: protein tetramerization1.25E-03
56GO:0010275: NAD(P)H dehydrogenase complex assembly1.25E-03
57GO:1900871: chloroplast mRNA modification1.25E-03
58GO:1902326: positive regulation of chlorophyll biosynthetic process1.25E-03
59GO:0018026: peptidyl-lysine monomethylation1.25E-03
60GO:0000256: allantoin catabolic process1.25E-03
61GO:0071668: plant-type cell wall assembly1.25E-03
62GO:0006423: cysteinyl-tRNA aminoacylation1.25E-03
63GO:0006435: threonyl-tRNA aminoacylation1.25E-03
64GO:0080183: response to photooxidative stress1.25E-03
65GO:0006729: tetrahydrobiopterin biosynthetic process1.25E-03
66GO:1903426: regulation of reactive oxygen species biosynthetic process1.25E-03
67GO:0006779: porphyrin-containing compound biosynthetic process1.37E-03
68GO:0009089: lysine biosynthetic process via diaminopimelate1.85E-03
69GO:0009773: photosynthetic electron transport in photosystem I1.85E-03
70GO:0006352: DNA-templated transcription, initiation1.85E-03
71GO:0000913: preprophase band assembly2.05E-03
72GO:0033591: response to L-ascorbic acid2.05E-03
73GO:0031022: nuclear migration along microfilament2.05E-03
74GO:0010136: ureide catabolic process2.05E-03
75GO:0010589: leaf proximal/distal pattern formation2.05E-03
76GO:0034051: negative regulation of plant-type hypersensitive response2.05E-03
77GO:0051604: protein maturation2.05E-03
78GO:0015940: pantothenate biosynthetic process2.05E-03
79GO:0044375: regulation of peroxisome size2.05E-03
80GO:0045493: xylan catabolic process2.05E-03
81GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.05E-03
82GO:0005977: glycogen metabolic process2.05E-03
83GO:0016024: CDP-diacylglycerol biosynthetic process2.12E-03
84GO:0006020: inositol metabolic process2.98E-03
85GO:0009102: biotin biosynthetic process2.98E-03
86GO:0009152: purine ribonucleotide biosynthetic process2.98E-03
87GO:0046653: tetrahydrofolate metabolic process2.98E-03
88GO:0010239: chloroplast mRNA processing2.98E-03
89GO:0009052: pentose-phosphate shunt, non-oxidative branch2.98E-03
90GO:0033014: tetrapyrrole biosynthetic process2.98E-03
91GO:0010731: protein glutathionylation2.98E-03
92GO:0006424: glutamyl-tRNA aminoacylation2.98E-03
93GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.98E-03
94GO:0006145: purine nucleobase catabolic process2.98E-03
95GO:2001141: regulation of RNA biosynthetic process2.98E-03
96GO:0010371: regulation of gibberellin biosynthetic process2.98E-03
97GO:0009765: photosynthesis, light harvesting4.02E-03
98GO:2000306: positive regulation of photomorphogenesis4.02E-03
99GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.02E-03
100GO:0006021: inositol biosynthetic process4.02E-03
101GO:0071483: cellular response to blue light4.02E-03
102GO:0010021: amylopectin biosynthetic process4.02E-03
103GO:0010109: regulation of photosynthesis4.02E-03
104GO:0048511: rhythmic process4.60E-03
105GO:0019748: secondary metabolic process5.04E-03
106GO:0006631: fatty acid metabolic process5.14E-03
107GO:0016123: xanthophyll biosynthetic process5.16E-03
108GO:0000304: response to singlet oxygen5.16E-03
109GO:0080110: sporopollenin biosynthetic process5.16E-03
110GO:0032543: mitochondrial translation5.16E-03
111GO:0006564: L-serine biosynthetic process5.16E-03
112GO:0009904: chloroplast accumulation movement5.16E-03
113GO:0010236: plastoquinone biosynthetic process5.16E-03
114GO:0016120: carotene biosynthetic process5.16E-03
115GO:0031365: N-terminal protein amino acid modification5.16E-03
116GO:0009107: lipoate biosynthetic process5.16E-03
117GO:0006655: phosphatidylglycerol biosynthetic process6.40E-03
118GO:0016554: cytidine to uridine editing6.40E-03
119GO:0045962: positive regulation of development, heterochronic6.40E-03
120GO:0046855: inositol phosphate dephosphorylation6.40E-03
121GO:0009451: RNA modification6.87E-03
122GO:0009903: chloroplast avoidance movement7.73E-03
123GO:0030488: tRNA methylation7.73E-03
124GO:0009791: post-embryonic development8.77E-03
125GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.15E-03
126GO:0035196: production of miRNAs involved in gene silencing by miRNA9.15E-03
127GO:0032508: DNA duplex unwinding1.07E-02
128GO:2000070: regulation of response to water deprivation1.07E-02
129GO:0022900: electron transport chain1.23E-02
130GO:0015996: chlorophyll catabolic process1.23E-02
131GO:0007186: G-protein coupled receptor signaling pathway1.23E-02
132GO:0017004: cytochrome complex assembly1.23E-02
133GO:0098656: anion transmembrane transport1.39E-02
134GO:0009821: alkaloid biosynthetic process1.39E-02
135GO:0019432: triglyceride biosynthetic process1.39E-02
136GO:0048507: meristem development1.39E-02
137GO:0006508: proteolysis1.47E-02
138GO:0010267: production of ta-siRNAs involved in RNA interference1.57E-02
139GO:0043067: regulation of programmed cell death1.57E-02
140GO:1900865: chloroplast RNA modification1.57E-02
141GO:0048354: mucilage biosynthetic process involved in seed coat development1.57E-02
142GO:0031425: chloroplast RNA processing1.57E-02
143GO:0006535: cysteine biosynthetic process from serine1.75E-02
144GO:0009817: defense response to fungus, incompatible interaction1.79E-02
145GO:0018298: protein-chromophore linkage1.79E-02
146GO:0009684: indoleacetic acid biosynthetic process1.94E-02
147GO:0019684: photosynthesis, light reaction1.94E-02
148GO:0008285: negative regulation of cell proliferation1.94E-02
149GO:0018119: peptidyl-cysteine S-nitrosylation1.94E-02
150GO:0006415: translational termination1.94E-02
151GO:0007568: aging2.07E-02
152GO:0006790: sulfur compound metabolic process2.14E-02
153GO:0005983: starch catabolic process2.14E-02
154GO:0045037: protein import into chloroplast stroma2.14E-02
155GO:0045087: innate immune response2.27E-02
156GO:0009725: response to hormone2.34E-02
157GO:0006413: translational initiation2.41E-02
158GO:0010143: cutin biosynthetic process2.56E-02
159GO:0010020: chloroplast fission2.56E-02
160GO:0009266: response to temperature stimulus2.56E-02
161GO:0007031: peroxisome organization2.77E-02
162GO:0090351: seedling development2.77E-02
163GO:0046854: phosphatidylinositol phosphorylation2.77E-02
164GO:0006636: unsaturated fatty acid biosynthetic process3.00E-02
165GO:0019344: cysteine biosynthetic process3.23E-02
166GO:0006289: nucleotide-excision repair3.23E-02
167GO:0009636: response to toxic substance3.29E-02
168GO:0005975: carbohydrate metabolic process3.31E-02
169GO:0006397: mRNA processing3.38E-02
170GO:0006855: drug transmembrane transport3.42E-02
171GO:0008299: isoprenoid biosynthetic process3.46E-02
172GO:0016575: histone deacetylation3.46E-02
173GO:0009768: photosynthesis, light harvesting in photosystem I3.46E-02
174GO:0007017: microtubule-based process3.46E-02
175GO:0010073: meristem maintenance3.46E-02
176GO:0009793: embryo development ending in seed dormancy3.56E-02
177GO:0061077: chaperone-mediated protein folding3.70E-02
178GO:0031408: oxylipin biosynthetic process3.70E-02
179GO:0016114: terpenoid biosynthetic process3.70E-02
180GO:0016226: iron-sulfur cluster assembly3.95E-02
181GO:0035428: hexose transmembrane transport3.95E-02
182GO:0080092: regulation of pollen tube growth3.95E-02
183GO:0010227: floral organ abscission4.20E-02
184GO:0010584: pollen exine formation4.46E-02
185GO:0009306: protein secretion4.46E-02
186GO:0042254: ribosome biogenesis4.61E-02
187GO:0016117: carotenoid biosynthetic process4.72E-02
188GO:0000271: polysaccharide biosynthetic process4.98E-02
189GO:0042335: cuticle development4.98E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0005048: signal sequence binding0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
13GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
14GO:0015229: L-ascorbic acid transporter activity0.00E+00
15GO:0051721: protein phosphatase 2A binding0.00E+00
16GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
17GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
18GO:0042903: tubulin deacetylase activity0.00E+00
19GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
20GO:0045435: lycopene epsilon cyclase activity0.00E+00
21GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
22GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
23GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
24GO:0036033: mediator complex binding0.00E+00
25GO:0070402: NADPH binding1.85E-07
26GO:0016851: magnesium chelatase activity8.81E-07
27GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.47E-05
28GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.95E-05
29GO:0030267: glyoxylate reductase (NADP) activity4.88E-05
30GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.77E-04
31GO:0016987: sigma factor activity1.77E-04
32GO:0001053: plastid sigma factor activity1.77E-04
33GO:0008266: poly(U) RNA binding2.73E-04
34GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.77E-04
35GO:0005528: FK506 binding4.26E-04
36GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.01E-04
37GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity5.80E-04
38GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.80E-04
39GO:0005227: calcium activated cation channel activity5.80E-04
40GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.80E-04
41GO:0004856: xylulokinase activity5.80E-04
42GO:0009496: plastoquinol--plastocyanin reductase activity5.80E-04
43GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.80E-04
44GO:0005080: protein kinase C binding5.80E-04
45GO:0004325: ferrochelatase activity5.80E-04
46GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.80E-04
47GO:0042586: peptide deformylase activity5.80E-04
48GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.80E-04
49GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.80E-04
50GO:0005344: oxygen transporter activity5.80E-04
51GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.80E-04
52GO:0019843: rRNA binding9.06E-04
53GO:0009977: proton motive force dependent protein transmembrane transporter activity1.25E-03
54GO:0004617: phosphoglycerate dehydrogenase activity1.25E-03
55GO:0016415: octanoyltransferase activity1.25E-03
56GO:0052832: inositol monophosphate 3-phosphatase activity1.25E-03
57GO:0004817: cysteine-tRNA ligase activity1.25E-03
58GO:0016630: protochlorophyllide reductase activity1.25E-03
59GO:0004829: threonine-tRNA ligase activity1.25E-03
60GO:0019156: isoamylase activity1.25E-03
61GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.25E-03
62GO:0008934: inositol monophosphate 1-phosphatase activity1.25E-03
63GO:0052833: inositol monophosphate 4-phosphatase activity1.25E-03
64GO:0050017: L-3-cyanoalanine synthase activity1.25E-03
65GO:0017118: lipoyltransferase activity1.25E-03
66GO:0042389: omega-3 fatty acid desaturase activity1.25E-03
67GO:0048038: quinone binding1.35E-03
68GO:0016491: oxidoreductase activity1.48E-03
69GO:0015462: ATPase-coupled protein transmembrane transporter activity2.05E-03
70GO:0005504: fatty acid binding2.05E-03
71GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.05E-03
72GO:0003913: DNA photolyase activity2.05E-03
73GO:0004148: dihydrolipoyl dehydrogenase activity2.05E-03
74GO:0004751: ribose-5-phosphate isomerase activity2.05E-03
75GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.05E-03
76GO:0008864: formyltetrahydrofolate deformylase activity2.05E-03
77GO:0031072: heat shock protein binding2.41E-03
78GO:0008236: serine-type peptidase activity2.85E-03
79GO:0003723: RNA binding2.95E-03
80GO:0048027: mRNA 5'-UTR binding2.98E-03
81GO:0048487: beta-tubulin binding2.98E-03
82GO:0004792: thiosulfate sulfurtransferase activity2.98E-03
83GO:0016149: translation release factor activity, codon specific2.98E-03
84GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.98E-03
85GO:0043023: ribosomal large subunit binding2.98E-03
86GO:0035198: miRNA binding2.98E-03
87GO:0005525: GTP binding3.23E-03
88GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.66E-03
89GO:0051536: iron-sulfur cluster binding3.79E-03
90GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.02E-03
91GO:0070628: proteasome binding4.02E-03
92GO:0004045: aminoacyl-tRNA hydrolase activity4.02E-03
93GO:0045430: chalcone isomerase activity4.02E-03
94GO:0009044: xylan 1,4-beta-xylosidase activity4.02E-03
95GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity4.02E-03
96GO:0043495: protein anchor4.02E-03
97GO:0046556: alpha-L-arabinofuranosidase activity4.02E-03
98GO:0016279: protein-lysine N-methyltransferase activity4.02E-03
99GO:0003746: translation elongation factor activity4.12E-03
100GO:0003993: acid phosphatase activity4.36E-03
101GO:0008374: O-acyltransferase activity5.16E-03
102GO:0003959: NADPH dehydrogenase activity5.16E-03
103GO:0016773: phosphotransferase activity, alcohol group as acceptor5.16E-03
104GO:0004040: amidase activity5.16E-03
105GO:0003729: mRNA binding5.35E-03
106GO:0031593: polyubiquitin binding6.40E-03
107GO:0004556: alpha-amylase activity6.40E-03
108GO:0004130: cytochrome-c peroxidase activity6.40E-03
109GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.40E-03
110GO:0004124: cysteine synthase activity7.73E-03
111GO:0051920: peroxiredoxin activity7.73E-03
112GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.73E-03
113GO:0016832: aldehyde-lyase activity7.73E-03
114GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.73E-03
115GO:0005261: cation channel activity7.73E-03
116GO:0009927: histidine phosphotransfer kinase activity7.73E-03
117GO:0019899: enzyme binding9.15E-03
118GO:0009881: photoreceptor activity9.15E-03
119GO:0016209: antioxidant activity1.07E-02
120GO:0008312: 7S RNA binding1.07E-02
121GO:0043022: ribosome binding1.07E-02
122GO:0004033: aldo-keto reductase (NADP) activity1.07E-02
123GO:0008135: translation factor activity, RNA binding1.23E-02
124GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.23E-02
125GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.23E-02
126GO:0004601: peroxidase activity1.29E-02
127GO:0016788: hydrolase activity, acting on ester bonds1.33E-02
128GO:0003747: translation release factor activity1.39E-02
129GO:0016168: chlorophyll binding1.45E-02
130GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.57E-02
131GO:0016844: strictosidine synthase activity1.57E-02
132GO:0047372: acylglycerol lipase activity1.94E-02
133GO:0005089: Rho guanyl-nucleotide exchange factor activity1.94E-02
134GO:0004252: serine-type endopeptidase activity2.00E-02
135GO:0016887: ATPase activity2.13E-02
136GO:0003725: double-stranded RNA binding2.34E-02
137GO:0004565: beta-galactosidase activity2.34E-02
138GO:0005315: inorganic phosphate transmembrane transporter activity2.34E-02
139GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.56E-02
140GO:0004364: glutathione transferase activity2.81E-02
141GO:0004185: serine-type carboxypeptidase activity2.93E-02
142GO:0031409: pigment binding3.00E-02
143GO:0016787: hydrolase activity3.01E-02
144GO:0051537: 2 iron, 2 sulfur cluster binding3.17E-02
145GO:0003924: GTPase activity3.18E-02
146GO:0003743: translation initiation factor activity3.19E-02
147GO:0004407: histone deacetylase activity3.23E-02
148GO:0043130: ubiquitin binding3.23E-02
149GO:0042802: identical protein binding3.54E-02
150GO:0051287: NAD binding3.55E-02
151GO:0004176: ATP-dependent peptidase activity3.70E-02
152GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.94E-02
153GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.95E-02
154GO:0003824: catalytic activity4.18E-02
155GO:0022891: substrate-specific transmembrane transporter activity4.20E-02
156GO:0030570: pectate lyase activity4.20E-02
157GO:0008514: organic anion transmembrane transporter activity4.46E-02
158GO:0003756: protein disulfide isomerase activity4.46E-02
159GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.80E-02
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Gene type



Gene DE type