co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0023052: signaling	0.00E+00
2	GO:0006511: ubiquitin-dependent protein catabolic process	2.02E-09
3	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.74E-08
4	GO:0030163: protein catabolic process	1.15E-06
5	GO:0010498: proteasomal protein catabolic process	1.76E-06
6	GO:0009407: toxin catabolic process	4.41E-06
7	GO:0030433: ubiquitin-dependent ERAD pathway	1.34E-05
8	GO:0015798: myo-inositol transport	9.33E-05
9	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	9.33E-05
10	GO:0046256: 2,4,6-trinitrotoluene catabolic process	9.33E-05
11	GO:0018345: protein palmitoylation	2.20E-04
12	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.20E-04
13	GO:0006672: ceramide metabolic process	2.20E-04
14	GO:0006212: uracil catabolic process	2.20E-04
15	GO:0051788: response to misfolded protein	2.20E-04
16	GO:0051258: protein polymerization	2.20E-04
17	GO:0019483: beta-alanine biosynthetic process	2.20E-04
18	GO:0009636: response to toxic substance	2.34E-04
19	GO:0018342: protein prenylation	3.67E-04
20	GO:0001676: long-chain fatty acid metabolic process	5.28E-04
21	GO:0009647: skotomorphogenesis	5.28E-04
22	GO:0010255: glucose mediated signaling pathway	5.28E-04
23	GO:1901657: glycosyl compound metabolic process	8.05E-04
24	GO:0006914: autophagy	8.55E-04
25	GO:0046283: anthocyanin-containing compound metabolic process	8.88E-04
26	GO:0009823: cytokinin catabolic process	8.88E-04
27	GO:0006555: methionine metabolic process	1.08E-03
28	GO:0043248: proteasome assembly	1.08E-03
29	GO:0042176: regulation of protein catabolic process	1.08E-03
30	GO:0007166: cell surface receptor signaling pathway	1.10E-03
31	GO:0006694: steroid biosynthetic process	1.29E-03
32	GO:0019509: L-methionine salvage from methylthioadenosine	1.29E-03
33	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.29E-03
34	GO:0048528: post-embryonic root development	1.51E-03
35	GO:0031540: regulation of anthocyanin biosynthetic process	1.75E-03
36	GO:0048766: root hair initiation	1.75E-03
37	GO:0043562: cellular response to nitrogen levels	2.00E-03
38	GO:0009932: cell tip growth	2.00E-03
39	GO:0007186: G-protein coupled receptor signaling pathway	2.00E-03
40	GO:0055114: oxidation-reduction process	2.02E-03
41	GO:0046685: response to arsenic-containing substance	2.25E-03
42	GO:0043067: regulation of programmed cell death	2.52E-03
43	GO:0009736: cytokinin-activated signaling pathway	2.82E-03
44	GO:0048765: root hair cell differentiation	3.09E-03
45	GO:0046856: phosphatidylinositol dephosphorylation	3.09E-03
46	GO:0005986: sucrose biosynthetic process	3.69E-03
47	GO:0010102: lateral root morphogenesis	3.69E-03
48	GO:0009553: embryo sac development	3.88E-03
49	GO:0010540: basipetal auxin transport	4.01E-03
50	GO:0010053: root epidermal cell differentiation	4.33E-03
51	GO:0000162: tryptophan biosynthetic process	4.67E-03
52	GO:0010187: negative regulation of seed germination	5.01E-03
53	GO:0006874: cellular calcium ion homeostasis	5.36E-03
54	GO:0035428: hexose transmembrane transport	6.09E-03
55	GO:0009625: response to insect	6.47E-03
56	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.25E-03
57	GO:0042631: cellular response to water deprivation	7.65E-03
58	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	7.69E-03
59	GO:0046323: glucose import	8.06E-03
60	GO:0006885: regulation of pH	8.06E-03
61	GO:0006623: protein targeting to vacuole	8.90E-03
62	GO:0048825: cotyledon development	8.90E-03
63	GO:0010193: response to ozone	9.33E-03
64	GO:0010252: auxin homeostasis	1.07E-02
65	GO:0009615: response to virus	1.21E-02
66	GO:0016126: sterol biosynthetic process	1.21E-02
67	GO:0010411: xyloglucan metabolic process	1.36E-02
68	GO:0044550: secondary metabolite biosynthetic process	1.44E-02
69	GO:0008219: cell death	1.46E-02
70	GO:0000160: phosphorelay signal transduction system	1.51E-02
71	GO:0048527: lateral root development	1.62E-02
72	GO:0009867: jasmonic acid mediated signaling pathway	1.73E-02
73	GO:0045087: innate immune response	1.73E-02
74	GO:0006839: mitochondrial transport	1.89E-02
75	GO:0006631: fatty acid metabolic process	1.95E-02
76	GO:0009408: response to heat	1.96E-02
77	GO:0009733: response to auxin	2.02E-02
78	GO:0042546: cell wall biogenesis	2.13E-02
79	GO:0006812: cation transport	2.43E-02
80	GO:0009809: lignin biosynthetic process	2.55E-02
81	GO:0006813: potassium ion transport	2.55E-02
82	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.59E-02
83	GO:0051603: proteolysis involved in cellular protein catabolic process	2.62E-02
84	GO:0009620: response to fungus	3.08E-02
85	GO:0009908: flower development	3.14E-02
86	GO:0006396: RNA processing	3.35E-02
87	GO:0009742: brassinosteroid mediated signaling pathway	3.42E-02
88	GO:0009555: pollen development	3.47E-02
89	GO:0007275: multicellular organism development	4.06E-02
90	GO:0009845: seed germination	4.07E-02
91	GO:0042744: hydrogen peroxide catabolic process	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0004157: dihydropyrimidinase activity	0.00E+00
2	GO:0001729: ceramide kinase activity	0.00E+00
3	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
4	GO:0036402: proteasome-activating ATPase activity	9.74E-08
5	GO:0017025: TBP-class protein binding	5.63E-06
6	GO:0004364: glutathione transferase activity	9.42E-06
7	GO:0004298: threonine-type endopeptidase activity	1.15E-05
8	GO:0005366: myo-inositol:proton symporter activity	2.20E-04
9	GO:0010297: heteropolysaccharide binding	2.20E-04
10	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	2.20E-04
11	GO:0008233: peptidase activity	3.11E-04
12	GO:0004324: ferredoxin-NADP+ reductase activity	3.67E-04
13	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.67E-04
14	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	3.67E-04
15	GO:0050307: sucrose-phosphate phosphatase activity	3.67E-04
16	GO:0010279: indole-3-acetic acid amido synthetase activity	7.02E-04
17	GO:0004834: tryptophan synthase activity	7.02E-04
18	GO:0019139: cytokinin dehydrogenase activity	8.88E-04
19	GO:0047714: galactolipase activity	1.08E-03
20	GO:0102483: scopolin beta-glucosidase activity	1.18E-03
21	GO:0051920: peroxiredoxin activity	1.29E-03
22	GO:0102391: decanoate--CoA ligase activity	1.29E-03
23	GO:0043295: glutathione binding	1.51E-03
24	GO:0004467: long-chain fatty acid-CoA ligase activity	1.51E-03
25	GO:0004601: peroxidase activity	1.61E-03
26	GO:0016209: antioxidant activity	1.75E-03
27	GO:0008422: beta-glucosidase activity	1.79E-03
28	GO:0003951: NAD+ kinase activity	2.00E-03
29	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	2.00E-03
30	GO:0030234: enzyme regulator activity	2.80E-03
31	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.38E-03
32	GO:0004022: alcohol dehydrogenase (NAD) activity	3.69E-03
33	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.69E-03
34	GO:0008131: primary amine oxidase activity	4.01E-03
35	GO:0004970: ionotropic glutamate receptor activity	4.33E-03
36	GO:0005217: intracellular ligand-gated ion channel activity	4.33E-03
37	GO:0043130: ubiquitin binding	5.01E-03
38	GO:0016887: ATPase activity	6.00E-03
39	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.41E-03
40	GO:0005451: monovalent cation:proton antiporter activity	7.65E-03
41	GO:0015299: solute:proton antiporter activity	8.47E-03
42	GO:0010181: FMN binding	8.47E-03
43	GO:0005355: glucose transmembrane transporter activity	8.47E-03
44	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.33E-03
45	GO:0048038: quinone binding	9.33E-03
46	GO:0008137: NADH dehydrogenase (ubiquinone) activity	9.33E-03
47	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.01E-02
48	GO:0000156: phosphorelay response regulator activity	1.02E-02
49	GO:0015385: sodium:proton antiporter activity	1.02E-02
50	GO:0000287: magnesium ion binding	1.05E-02
51	GO:0008237: metallopeptidase activity	1.11E-02
52	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.36E-02
53	GO:0004806: triglyceride lipase activity	1.36E-02
54	GO:0030247: polysaccharide binding	1.36E-02
55	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.41E-02
56	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.59E-02
57	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.62E-02
58	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.71E-02
59	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.77E-02
60	GO:0051539: 4 iron, 4 sulfur cluster binding	1.89E-02
61	GO:0016491: oxidoreductase activity	2.47E-02
62	GO:0016874: ligase activity	3.15E-02
63	GO:0003779: actin binding	3.21E-02
64	GO:0004252: serine-type endopeptidase activity	4.15E-02
65	GO:0030170: pyridoxal phosphate binding	4.15E-02
66	GO:0015144: carbohydrate transmembrane transporter activity	4.38E-02
67	GO:0005351: sugar:proton symporter activity	4.76E-02
68	GO:0019825: oxygen binding	4.92E-02