Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56160

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0017038: protein import0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0046460: neutral lipid biosynthetic process0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0031116: positive regulation of microtubule polymerization0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0006429: leucyl-tRNA aminoacylation0.00E+00
10GO:0043488: regulation of mRNA stability0.00E+00
11GO:2000505: regulation of energy homeostasis0.00E+00
12GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
13GO:0009658: chloroplast organization8.46E-06
14GO:0006415: translational termination8.25E-05
15GO:0045038: protein import into chloroplast thylakoid membrane1.69E-04
16GO:0016123: xanthophyll biosynthetic process1.69E-04
17GO:0090351: seedling development1.76E-04
18GO:0010190: cytochrome b6f complex assembly2.41E-04
19GO:0006400: tRNA modification4.18E-04
20GO:0071028: nuclear mRNA surveillance4.34E-04
21GO:0043266: regulation of potassium ion transport4.34E-04
22GO:0006659: phosphatidylserine biosynthetic process4.34E-04
23GO:0042547: cell wall modification involved in multidimensional cell growth4.34E-04
24GO:2000021: regulation of ion homeostasis4.34E-04
25GO:1902458: positive regulation of stomatal opening4.34E-04
26GO:0006747: FAD biosynthetic process4.34E-04
27GO:0006419: alanyl-tRNA aminoacylation4.34E-04
28GO:0000476: maturation of 4.5S rRNA4.34E-04
29GO:0000967: rRNA 5'-end processing4.34E-04
30GO:0006353: DNA-templated transcription, termination5.22E-04
31GO:0009657: plastid organization6.37E-04
32GO:0010206: photosystem II repair7.63E-04
33GO:0009793: embryo development ending in seed dormancy7.82E-04
34GO:1900871: chloroplast mRNA modification9.39E-04
35GO:0034755: iron ion transmembrane transport9.39E-04
36GO:0006423: cysteinyl-tRNA aminoacylation9.39E-04
37GO:0006435: threonyl-tRNA aminoacylation9.39E-04
38GO:0090342: regulation of cell aging9.39E-04
39GO:0009220: pyrimidine ribonucleotide biosynthetic process9.39E-04
40GO:0031125: rRNA 3'-end processing9.39E-04
41GO:1903426: regulation of reactive oxygen species biosynthetic process9.39E-04
42GO:0071051: polyadenylation-dependent snoRNA 3'-end processing9.39E-04
43GO:0034470: ncRNA processing9.39E-04
44GO:0034475: U4 snRNA 3'-end processing9.39E-04
45GO:0006782: protoporphyrinogen IX biosynthetic process1.05E-03
46GO:0009684: indoleacetic acid biosynthetic process1.20E-03
47GO:0045037: protein import into chloroplast stroma1.38E-03
48GO:0009627: systemic acquired resistance1.42E-03
49GO:0015995: chlorophyll biosynthetic process1.52E-03
50GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.53E-03
51GO:0001578: microtubule bundle formation1.53E-03
52GO:0045493: xylan catabolic process1.53E-03
53GO:0006760: folic acid-containing compound metabolic process1.53E-03
54GO:0030261: chromosome condensation1.53E-03
55GO:0016075: rRNA catabolic process1.53E-03
56GO:0033591: response to L-ascorbic acid1.53E-03
57GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.53E-03
58GO:2000012: regulation of auxin polar transport1.56E-03
59GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.21E-03
60GO:0010371: regulation of gibberellin biosynthetic process2.21E-03
61GO:0009102: biotin biosynthetic process2.21E-03
62GO:0046653: tetrahydrofolate metabolic process2.21E-03
63GO:0010239: chloroplast mRNA processing2.21E-03
64GO:0009226: nucleotide-sugar biosynthetic process2.21E-03
65GO:0006418: tRNA aminoacylation for protein translation2.70E-03
66GO:0022622: root system development2.97E-03
67GO:0046656: folic acid biosynthetic process2.97E-03
68GO:0006021: inositol biosynthetic process2.97E-03
69GO:0007020: microtubule nucleation2.97E-03
70GO:0071483: cellular response to blue light2.97E-03
71GO:0044205: 'de novo' UMP biosynthetic process2.97E-03
72GO:0010109: regulation of photosynthesis2.97E-03
73GO:0051322: anaphase2.97E-03
74GO:0009765: photosynthesis, light harvesting2.97E-03
75GO:0046785: microtubule polymerization3.80E-03
76GO:0032543: mitochondrial translation3.80E-03
77GO:0016120: carotene biosynthetic process3.80E-03
78GO:0006465: signal peptide processing3.80E-03
79GO:0016131: brassinosteroid metabolic process3.80E-03
80GO:0016117: carotenoid biosynthetic process4.18E-03
81GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.18E-03
82GO:0016554: cytidine to uridine editing4.71E-03
83GO:0032973: amino acid export4.71E-03
84GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.71E-03
85GO:0006655: phosphatidylglycerol biosynthetic process4.71E-03
86GO:0009958: positive gravitropism4.87E-03
87GO:0009646: response to absence of light5.24E-03
88GO:0017148: negative regulation of translation5.68E-03
89GO:0034389: lipid particle organization5.68E-03
90GO:0046654: tetrahydrofolate biosynthetic process5.68E-03
91GO:1901259: chloroplast rRNA processing5.68E-03
92GO:0030488: tRNA methylation5.68E-03
93GO:0080086: stamen filament development5.68E-03
94GO:0009648: photoperiodism5.68E-03
95GO:0010310: regulation of hydrogen peroxide metabolic process5.68E-03
96GO:0042372: phylloquinone biosynthetic process5.68E-03
97GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.71E-03
98GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.71E-03
99GO:0015693: magnesium ion transport6.71E-03
100GO:0032880: regulation of protein localization6.71E-03
101GO:0009395: phospholipid catabolic process6.71E-03
102GO:0048528: post-embryonic root development6.71E-03
103GO:0043090: amino acid import6.71E-03
104GO:0055114: oxidation-reduction process7.34E-03
105GO:0071805: potassium ion transmembrane transport7.77E-03
106GO:0006605: protein targeting7.81E-03
107GO:0010078: maintenance of root meristem identity7.81E-03
108GO:0042255: ribosome assembly7.81E-03
109GO:0046620: regulation of organ growth7.81E-03
110GO:0009704: de-etiolation7.81E-03
111GO:0006875: cellular metal ion homeostasis7.81E-03
112GO:2000070: regulation of response to water deprivation7.81E-03
113GO:0000105: histidine biosynthetic process7.81E-03
114GO:0009231: riboflavin biosynthetic process7.81E-03
115GO:0052543: callose deposition in cell wall7.81E-03
116GO:0010027: thylakoid membrane organization8.74E-03
117GO:0032544: plastid translation8.97E-03
118GO:0043562: cellular response to nitrogen levels8.97E-03
119GO:0009932: cell tip growth8.97E-03
120GO:0071482: cellular response to light stimulus8.97E-03
121GO:0022900: electron transport chain8.97E-03
122GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway9.62E-03
123GO:0006098: pentose-phosphate shunt1.02E-02
124GO:0080144: amino acid homeostasis1.02E-02
125GO:0019432: triglyceride biosynthetic process1.02E-02
126GO:0006783: heme biosynthetic process1.02E-02
127GO:1900865: chloroplast RNA modification1.15E-02
128GO:0005982: starch metabolic process1.15E-02
129GO:0043067: regulation of programmed cell death1.15E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.15E-02
131GO:0042761: very long-chain fatty acid biosynthetic process1.15E-02
132GO:0009813: flavonoid biosynthetic process1.20E-02
133GO:0006949: syncytium formation1.28E-02
134GO:0010629: negative regulation of gene expression1.28E-02
135GO:0048527: lateral root development1.32E-02
136GO:0009089: lysine biosynthetic process via diaminopimelate1.42E-02
137GO:0008285: negative regulation of cell proliferation1.42E-02
138GO:1903507: negative regulation of nucleic acid-templated transcription1.42E-02
139GO:0006879: cellular iron ion homeostasis1.42E-02
140GO:0006352: DNA-templated transcription, initiation1.42E-02
141GO:0010015: root morphogenesis1.42E-02
142GO:0019684: photosynthesis, light reaction1.42E-02
143GO:0045490: pectin catabolic process1.50E-02
144GO:0016024: CDP-diacylglycerol biosynthetic process1.56E-02
145GO:0010588: cotyledon vascular tissue pattern formation1.71E-02
146GO:0009725: response to hormone1.71E-02
147GO:0006094: gluconeogenesis1.71E-02
148GO:0006631: fatty acid metabolic process1.73E-02
149GO:0010207: photosystem II assembly1.86E-02
150GO:0010020: chloroplast fission1.86E-02
151GO:0048467: gynoecium development1.86E-02
152GO:0019853: L-ascorbic acid biosynthetic process2.02E-02
153GO:0071732: cellular response to nitric oxide2.02E-02
154GO:0010030: positive regulation of seed germination2.02E-02
155GO:0010025: wax biosynthetic process2.18E-02
156GO:0006636: unsaturated fatty acid biosynthetic process2.18E-02
157GO:0006071: glycerol metabolic process2.18E-02
158GO:0006833: water transport2.18E-02
159GO:0030150: protein import into mitochondrial matrix2.35E-02
160GO:0007010: cytoskeleton organization2.35E-02
161GO:0009116: nucleoside metabolic process2.35E-02
162GO:0043622: cortical microtubule organization2.52E-02
163GO:0010073: meristem maintenance2.52E-02
164GO:0016575: histone deacetylation2.52E-02
165GO:0006364: rRNA processing2.53E-02
166GO:0006813: potassium ion transport2.53E-02
167GO:0048511: rhythmic process2.70E-02
168GO:0061077: chaperone-mediated protein folding2.70E-02
169GO:2000022: regulation of jasmonic acid mediated signaling pathway2.87E-02
170GO:0006730: one-carbon metabolic process2.87E-02
171GO:0031348: negative regulation of defense response2.87E-02
172GO:0009814: defense response, incompatible interaction2.87E-02
173GO:0071369: cellular response to ethylene stimulus3.06E-02
174GO:0010227: floral organ abscission3.06E-02
175GO:0006012: galactose metabolic process3.06E-02
176GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.06E-02
177GO:0009306: protein secretion3.25E-02
178GO:0008284: positive regulation of cell proliferation3.44E-02
179GO:0080022: primary root development3.63E-02
180GO:0008033: tRNA processing3.63E-02
181GO:0034220: ion transmembrane transport3.63E-02
182GO:0010087: phloem or xylem histogenesis3.63E-02
183GO:0042631: cellular response to water deprivation3.63E-02
184GO:0006396: RNA processing3.71E-02
185GO:0010197: polar nucleus fusion3.83E-02
186GO:0015979: photosynthesis4.01E-02
187GO:0042752: regulation of circadian rhythm4.03E-02
188GO:0009791: post-embryonic development4.24E-02
189GO:0048825: cotyledon development4.24E-02
190GO:0008654: phospholipid biosynthetic process4.24E-02
191GO:0009851: auxin biosynthetic process4.24E-02
192GO:0000302: response to reactive oxygen species4.45E-02
193GO:0016132: brassinosteroid biosynthetic process4.45E-02
194GO:0016032: viral process4.66E-02
195GO:0032502: developmental process4.66E-02
196GO:0030163: protein catabolic process4.88E-02
197GO:0071281: cellular response to iron ion4.88E-02
198GO:0010090: trichome morphogenesis4.88E-02
199GO:1901657: glycosyl compound metabolic process4.88E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0008115: sarcosine oxidase activity0.00E+00
3GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
4GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004823: leucine-tRNA ligase activity0.00E+00
14GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
15GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
16GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
17GO:0005048: signal sequence binding0.00E+00
18GO:0004076: biotin synthase activity0.00E+00
19GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
20GO:0010349: L-galactose dehydrogenase activity0.00E+00
21GO:0043864: indoleacetamide hydrolase activity0.00E+00
22GO:0002161: aminoacyl-tRNA editing activity2.89E-05
23GO:0003747: translation release factor activity3.84E-05
24GO:0016149: translation release factor activity, codon specific6.26E-05
25GO:0016851: magnesium chelatase activity6.26E-05
26GO:0004040: amidase activity1.69E-04
27GO:0005528: FK506 binding2.38E-04
28GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.14E-04
29GO:0030570: pectate lyase activity3.95E-04
30GO:0004813: alanine-tRNA ligase activity4.34E-04
31GO:0004853: uroporphyrinogen decarboxylase activity4.34E-04
32GO:0015088: copper uptake transmembrane transporter activity4.34E-04
33GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.34E-04
34GO:0050139: nicotinate-N-glucosyltransferase activity4.34E-04
35GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.34E-04
36GO:0009496: plastoquinol--plastocyanin reductase activity4.34E-04
37GO:0043022: ribosome binding5.22E-04
38GO:0005381: iron ion transmembrane transporter activity8.99E-04
39GO:0003919: FMN adenylyltransferase activity9.39E-04
40GO:0004829: threonine-tRNA ligase activity9.39E-04
41GO:0004150: dihydroneopterin aldolase activity9.39E-04
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.39E-04
43GO:0004512: inositol-3-phosphate synthase activity9.39E-04
44GO:0010291: carotene beta-ring hydroxylase activity9.39E-04
45GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.39E-04
46GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.39E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity9.39E-04
48GO:0102083: 7,8-dihydromonapterin aldolase activity9.39E-04
49GO:0004312: fatty acid synthase activity9.39E-04
50GO:0004817: cysteine-tRNA ligase activity9.39E-04
51GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.39E-04
52GO:0005525: GTP binding1.11E-03
53GO:0000049: tRNA binding1.38E-03
54GO:0003913: DNA photolyase activity1.53E-03
55GO:0030267: glyoxylate reductase (NADP) activity1.53E-03
56GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.53E-03
57GO:0015462: ATPase-coupled protein transmembrane transporter activity1.53E-03
58GO:0004180: carboxypeptidase activity1.53E-03
59GO:0005504: fatty acid binding1.53E-03
60GO:0070330: aromatase activity1.53E-03
61GO:0008236: serine-type peptidase activity1.63E-03
62GO:0048487: beta-tubulin binding2.21E-03
63GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.21E-03
64GO:0043023: ribosomal large subunit binding2.21E-03
65GO:0001872: (1->3)-beta-D-glucan binding2.21E-03
66GO:0016829: lyase activity2.33E-03
67GO:0015079: potassium ion transmembrane transporter activity2.70E-03
68GO:0009044: xylan 1,4-beta-xylosidase activity2.97E-03
69GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.97E-03
70GO:0046556: alpha-L-arabinofuranosidase activity2.97E-03
71GO:0001053: plastid sigma factor activity2.97E-03
72GO:0004045: aminoacyl-tRNA hydrolase activity2.97E-03
73GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.97E-03
74GO:0045430: chalcone isomerase activity2.97E-03
75GO:0016987: sigma factor activity2.97E-03
76GO:0018685: alkane 1-monooxygenase activity3.80E-03
77GO:0016846: carbon-sulfur lyase activity3.80E-03
78GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.96E-03
79GO:0004812: aminoacyl-tRNA ligase activity4.18E-03
80GO:0016208: AMP binding4.71E-03
81GO:0042578: phosphoric ester hydrolase activity4.71E-03
82GO:2001070: starch binding4.71E-03
83GO:0004332: fructose-bisphosphate aldolase activity4.71E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.68E-03
85GO:0016832: aldehyde-lyase activity5.68E-03
86GO:0003730: mRNA 3'-UTR binding5.68E-03
87GO:0004144: diacylglycerol O-acyltransferase activity5.68E-03
88GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.68E-03
89GO:0051920: peroxiredoxin activity5.68E-03
90GO:0004017: adenylate kinase activity5.68E-03
91GO:0009881: photoreceptor activity6.71E-03
92GO:0016788: hydrolase activity, acting on ester bonds6.77E-03
93GO:0004033: aldo-keto reductase (NADP) activity7.81E-03
94GO:0016209: antioxidant activity7.81E-03
95GO:0008312: 7S RNA binding7.81E-03
96GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.97E-03
97GO:0016491: oxidoreductase activity9.74E-03
98GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.03E-02
99GO:0052689: carboxylic ester hydrolase activity1.06E-02
100GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.37E-02
101GO:0047372: acylglycerol lipase activity1.42E-02
102GO:0003993: acid phosphatase activity1.52E-02
103GO:0008017: microtubule binding1.59E-02
104GO:0003924: GTPase activity1.65E-02
105GO:0051539: 4 iron, 4 sulfur cluster binding1.66E-02
106GO:0000175: 3'-5'-exoribonuclease activity1.71E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity1.71E-02
108GO:0015266: protein channel activity1.71E-02
109GO:0015095: magnesium ion transmembrane transporter activity1.71E-02
110GO:0031072: heat shock protein binding1.71E-02
111GO:0008083: growth factor activity1.86E-02
112GO:0051537: 2 iron, 2 sulfur cluster binding2.03E-02
113GO:0043621: protein self-association2.03E-02
114GO:0003714: transcription corepressor activity2.35E-02
115GO:0051536: iron-sulfur cluster binding2.35E-02
116GO:0004407: histone deacetylase activity2.35E-02
117GO:0008408: 3'-5' exonuclease activity2.70E-02
118GO:0050660: flavin adenine dinucleotide binding3.13E-02
119GO:0003727: single-stranded RNA binding3.25E-02
120GO:0008536: Ran GTPase binding3.83E-02
121GO:0050662: coenzyme binding4.03E-02
122GO:0004872: receptor activity4.24E-02
123GO:0019843: rRNA binding4.50E-02
124GO:0003723: RNA binding4.93E-02
125GO:0004252: serine-type endopeptidase activity4.98E-02
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Gene type



Gene DE type