co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051553: flavone biosynthetic process	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:0006497: protein lipidation	0.00E+00
4	GO:0090359: negative regulation of abscisic acid biosynthetic process	0.00E+00
5	GO:0010273: detoxification of copper ion	0.00E+00
6	GO:0006465: signal peptide processing	5.09E-05
7	GO:0016559: peroxisome fission	1.76E-04
8	GO:0032491: detection of molecule of fungal origin	2.09E-04
9	GO:0060862: negative regulation of floral organ abscission	2.09E-04
10	GO:0019605: butyrate metabolic process	2.09E-04
11	GO:0006083: acetate metabolic process	2.09E-04
12	GO:1990542: mitochondrial transmembrane transport	2.09E-04
13	GO:1902600: hydrogen ion transmembrane transport	2.09E-04
14	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.09E-04
15	GO:1901430: positive regulation of syringal lignin biosynthetic process	2.09E-04
16	GO:0010045: response to nickel cation	2.09E-04
17	GO:0010155: regulation of proton transport	4.66E-04
18	GO:0002240: response to molecule of oomycetes origin	4.66E-04
19	GO:0010115: regulation of abscisic acid biosynthetic process	4.66E-04
20	GO:0031349: positive regulation of defense response	4.66E-04
21	GO:0010042: response to manganese ion	4.66E-04
22	GO:0010271: regulation of chlorophyll catabolic process	4.66E-04
23	GO:0060919: auxin influx	4.66E-04
24	GO:0010541: acropetal auxin transport	4.66E-04
25	GO:0000266: mitochondrial fission	4.92E-04
26	GO:0002237: response to molecule of bacterial origin	6.29E-04
27	GO:0010288: response to lead ion	7.59E-04
28	GO:0009636: response to toxic substance	9.72E-04
29	GO:0046513: ceramide biosynthetic process	1.08E-03
30	GO:0002239: response to oomycetes	1.08E-03
31	GO:0045227: capsule polysaccharide biosynthetic process	1.44E-03
32	GO:0048638: regulation of developmental growth	1.44E-03
33	GO:0033358: UDP-L-arabinose biosynthetic process	1.44E-03
34	GO:0010600: regulation of auxin biosynthetic process	1.44E-03
35	GO:0042391: regulation of membrane potential	1.56E-03
36	GO:0050832: defense response to fungus	1.82E-03
37	GO:0006564: L-serine biosynthetic process	1.83E-03
38	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.83E-03
39	GO:0006097: glyoxylate cycle	1.83E-03
40	GO:0030308: negative regulation of cell growth	1.83E-03
41	GO:0009164: nucleoside catabolic process	1.83E-03
42	GO:0000304: response to singlet oxygen	1.83E-03
43	GO:0006979: response to oxidative stress	1.85E-03
44	GO:0002238: response to molecule of fungal origin	2.26E-03
45	GO:0006014: D-ribose metabolic process	2.26E-03
46	GO:0010942: positive regulation of cell death	2.26E-03
47	GO:0010315: auxin efflux	2.26E-03
48	GO:1900425: negative regulation of defense response to bacterium	2.26E-03
49	GO:0009117: nucleotide metabolic process	2.26E-03
50	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.26E-03
51	GO:0010038: response to metal ion	3.20E-03
52	GO:1900150: regulation of defense response to fungus	3.71E-03
53	GO:0009850: auxin metabolic process	3.71E-03
54	GO:0010150: leaf senescence	3.80E-03
55	GO:0010204: defense response signaling pathway, resistance gene-independent	4.24E-03
56	GO:0010497: plasmodesmata-mediated intercellular transport	4.24E-03
57	GO:0009407: toxin catabolic process	4.28E-03
58	GO:0007338: single fertilization	4.80E-03
59	GO:0009051: pentose-phosphate shunt, oxidative branch	4.80E-03
60	GO:0016051: carbohydrate biosynthetic process	4.91E-03
61	GO:0008202: steroid metabolic process	5.38E-03
62	GO:0048268: clathrin coat assembly	5.38E-03
63	GO:0010380: regulation of chlorophyll biosynthetic process	5.38E-03
64	GO:2000280: regulation of root development	5.38E-03
65	GO:0006032: chitin catabolic process	5.99E-03
66	GO:0048229: gametophyte development	6.62E-03
67	GO:0030148: sphingolipid biosynthetic process	6.62E-03
68	GO:0071365: cellular response to auxin stimulus	7.28E-03
69	GO:0045037: protein import into chloroplast stroma	7.28E-03
70	GO:0006952: defense response	7.94E-03
71	GO:0006006: glucose metabolic process	7.96E-03
72	GO:0010102: lateral root morphogenesis	7.96E-03
73	GO:0009809: lignin biosynthetic process	8.54E-03
74	GO:0006813: potassium ion transport	8.54E-03
75	GO:0010540: basipetal auxin transport	8.66E-03
76	GO:0034605: cellular response to heat	8.66E-03
77	GO:0006541: glutamine metabolic process	8.66E-03
78	GO:0016192: vesicle-mediated transport	9.27E-03
79	GO:0070588: calcium ion transmembrane transport	9.37E-03
80	GO:0007033: vacuole organization	9.37E-03
81	GO:0009225: nucleotide-sugar metabolic process	9.37E-03
82	GO:0046688: response to copper ion	9.37E-03
83	GO:0006096: glycolytic process	1.01E-02
84	GO:0000162: tryptophan biosynthetic process	1.01E-02
85	GO:0034976: response to endoplasmic reticulum stress	1.01E-02
86	GO:0005992: trehalose biosynthetic process	1.09E-02
87	GO:0030150: protein import into mitochondrial matrix	1.09E-02
88	GO:0009620: response to fungus	1.11E-02
89	GO:0006886: intracellular protein transport	1.14E-02
90	GO:0010073: meristem maintenance	1.17E-02
91	GO:0006825: copper ion transport	1.17E-02
92	GO:0016998: cell wall macromolecule catabolic process	1.25E-02
93	GO:0055114: oxidation-reduction process	1.31E-02
94	GO:0007005: mitochondrion organization	1.33E-02
95	GO:0071456: cellular response to hypoxia	1.33E-02
96	GO:0030245: cellulose catabolic process	1.33E-02
97	GO:0009411: response to UV	1.41E-02
98	GO:0006012: galactose metabolic process	1.41E-02
99	GO:0010089: xylem development	1.50E-02
100	GO:0010584: pollen exine formation	1.50E-02
101	GO:0042147: retrograde transport, endosome to Golgi	1.59E-02
102	GO:0070417: cellular response to cold	1.59E-02
103	GO:0008152: metabolic process	1.62E-02
104	GO:0000413: protein peptidyl-prolyl isomerization	1.68E-02
105	GO:0042744: hydrogen peroxide catabolic process	1.74E-02
106	GO:0045489: pectin biosynthetic process	1.77E-02
107	GO:0071472: cellular response to salt stress	1.77E-02
108	GO:0006885: regulation of pH	1.77E-02
109	GO:0019252: starch biosynthetic process	1.96E-02
110	GO:0009851: auxin biosynthetic process	1.96E-02
111	GO:0006623: protein targeting to vacuole	1.96E-02
112	GO:0002229: defense response to oomycetes	2.06E-02
113	GO:0006891: intra-Golgi vesicle-mediated transport	2.06E-02
114	GO:0009630: gravitropism	2.15E-02
115	GO:0042742: defense response to bacterium	2.20E-02
116	GO:0030163: protein catabolic process	2.25E-02
117	GO:0007165: signal transduction	2.29E-02
118	GO:0006914: autophagy	2.36E-02
119	GO:0009567: double fertilization forming a zygote and endosperm	2.36E-02
120	GO:0006464: cellular protein modification process	2.36E-02
121	GO:0006470: protein dephosphorylation	2.42E-02
122	GO:0071805: potassium ion transmembrane transport	2.46E-02
123	GO:0009617: response to bacterium	2.52E-02
124	GO:0001666: response to hypoxia	2.67E-02
125	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.78E-02
126	GO:0009816: defense response to bacterium, incompatible interaction	2.78E-02
127	GO:0006974: cellular response to DNA damage stimulus	2.89E-02
128	GO:0006906: vesicle fusion	2.89E-02
129	GO:0048573: photoperiodism, flowering	3.00E-02
130	GO:0016311: dephosphorylation	3.11E-02
131	GO:0015031: protein transport	3.14E-02
132	GO:0009817: defense response to fungus, incompatible interaction	3.23E-02
133	GO:0048767: root hair elongation	3.34E-02
134	GO:0009813: flavonoid biosynthetic process	3.34E-02
135	GO:0010311: lateral root formation	3.34E-02
136	GO:0006970: response to osmotic stress	3.52E-02
137	GO:0010043: response to zinc ion	3.58E-02
138	GO:0007568: aging	3.58E-02
139	GO:0048527: lateral root development	3.58E-02
140	GO:0009853: photorespiration	3.82E-02
141	GO:0006457: protein folding	4.04E-02
142	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.18E-02
143	GO:0010200: response to chitin	4.18E-02
144	GO:0006839: mitochondrial transport	4.19E-02
145	GO:0006887: exocytosis	4.32E-02
146	GO:0006897: endocytosis	4.32E-02
147	GO:0006508: proteolysis	4.36E-02
148	GO:0009926: auxin polar transport	4.57E-02
149	GO:0000209: protein polyubiquitination	4.71E-02
150	GO:0045454: cell redox homeostasis	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:1990482: sphingolipid alpha-glucuronosyltransferase activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.00E+00
4	GO:0033759: flavone synthase activity	0.00E+00
5	GO:0010290: chlorophyll catabolite transmembrane transporter activity	0.00E+00
6	GO:0015431: glutathione S-conjugate-exporting ATPase activity	0.00E+00
7	GO:0005212: structural constituent of eye lens	0.00E+00
8	GO:0005496: steroid binding	3.75E-07
9	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.76E-04
10	GO:0004649: poly(ADP-ribose) glycohydrolase activity	2.09E-04
11	GO:0010179: IAA-Ala conjugate hydrolase activity	2.09E-04
12	GO:0003987: acetate-CoA ligase activity	2.09E-04
13	GO:0015927: trehalase activity	2.09E-04
14	GO:0047760: butyrate-CoA ligase activity	2.09E-04
15	GO:0030955: potassium ion binding	3.16E-04
16	GO:0004743: pyruvate kinase activity	3.16E-04
17	GO:0015020: glucuronosyltransferase activity	3.71E-04
18	GO:0008559: xenobiotic-transporting ATPase activity	4.29E-04
19	GO:0004385: guanylate kinase activity	4.66E-04
20	GO:0032791: lead ion binding	4.66E-04
21	GO:0052739: phosphatidylserine 1-acylhydrolase activity	4.66E-04
22	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	4.66E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	4.66E-04
24	GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity	4.66E-04
25	GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity	4.66E-04
26	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	4.66E-04
27	GO:0000774: adenyl-nucleotide exchange factor activity	4.66E-04
28	GO:0032934: sterol binding	4.66E-04
29	GO:1990585: hydroxyproline O-arabinosyltransferase activity	4.66E-04
30	GO:0019779: Atg8 activating enzyme activity	4.66E-04
31	GO:0001671: ATPase activator activity	4.66E-04
32	GO:0045140: inositol phosphoceramide synthase activity	4.66E-04
33	GO:0050736: O-malonyltransferase activity	4.66E-04
34	GO:0005388: calcium-transporting ATPase activity	5.58E-04
35	GO:0030552: cAMP binding	7.02E-04
36	GO:0030553: cGMP binding	7.02E-04
37	GO:0004049: anthranilate synthase activity	7.59E-04
38	GO:0042409: caffeoyl-CoA O-methyltransferase activity	7.59E-04
39	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.59E-04
40	GO:0051087: chaperone binding	9.49E-04
41	GO:0005216: ion channel activity	9.49E-04
42	GO:0017077: oxidative phosphorylation uncoupler activity	1.08E-03
43	GO:0004416: hydroxyacylglutathione hydrolase activity	1.08E-03
44	GO:0022890: inorganic cation transmembrane transporter activity	1.08E-03
45	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.08E-03
46	GO:0000062: fatty-acyl-CoA binding	1.44E-03
47	GO:0050373: UDP-arabinose 4-epimerase activity	1.44E-03
48	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.44E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.44E-03
50	GO:0010328: auxin influx transmembrane transporter activity	1.44E-03
51	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.44E-03
52	GO:0005249: voltage-gated potassium channel activity	1.56E-03
53	GO:0030551: cyclic nucleotide binding	1.56E-03
54	GO:0015299: solute:proton antiporter activity	1.81E-03
55	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.83E-03
56	GO:0008374: O-acyltransferase activity	1.83E-03
57	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.83E-03
58	GO:0016301: kinase activity	1.95E-03
59	GO:0016208: AMP binding	2.26E-03
60	GO:0035252: UDP-xylosyltransferase activity	2.26E-03
61	GO:0051920: peroxiredoxin activity	2.71E-03
62	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.71E-03
63	GO:0004747: ribokinase activity	2.71E-03
64	GO:0004602: glutathione peroxidase activity	2.71E-03
65	GO:0003978: UDP-glucose 4-epimerase activity	2.71E-03
66	GO:0008320: protein transmembrane transporter activity	3.20E-03
67	GO:0016209: antioxidant activity	3.71E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	3.71E-03
69	GO:0008865: fructokinase activity	3.71E-03
70	GO:0008142: oxysterol binding	4.24E-03
71	GO:0004630: phospholipase D activity	4.24E-03
72	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.24E-03
73	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.24E-03
74	GO:0071949: FAD binding	4.80E-03
75	GO:0004805: trehalose-phosphatase activity	5.99E-03
76	GO:0004568: chitinase activity	5.99E-03
77	GO:0008171: O-methyltransferase activity	5.99E-03
78	GO:0005545: 1-phosphatidylinositol binding	5.99E-03
79	GO:0004713: protein tyrosine kinase activity	5.99E-03
80	GO:0004364: glutathione transferase activity	6.08E-03
81	GO:0004601: peroxidase activity	6.61E-03
82	GO:0015386: potassium:proton antiporter activity	6.62E-03
83	GO:0010329: auxin efflux transmembrane transporter activity	7.96E-03
84	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.96E-03
85	GO:0008233: peptidase activity	8.50E-03
86	GO:0004175: endopeptidase activity	8.66E-03
87	GO:0004190: aspartic-type endopeptidase activity	9.37E-03
88	GO:0004725: protein tyrosine phosphatase activity	1.01E-02
89	GO:0051536: iron-sulfur cluster binding	1.09E-02
90	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.11E-02
91	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.11E-02
92	GO:0015079: potassium ion transmembrane transporter activity	1.17E-02
93	GO:0008810: cellulase activity	1.41E-02
94	GO:0020037: heme binding	1.43E-02
95	GO:0016758: transferase activity, transferring hexosyl groups	1.49E-02
96	GO:0003756: protein disulfide isomerase activity	1.50E-02
97	GO:0005451: monovalent cation:proton antiporter activity	1.68E-02
98	GO:0030276: clathrin binding	1.77E-02
99	GO:0008565: protein transporter activity	1.83E-02
100	GO:0010181: FMN binding	1.86E-02
101	GO:0015385: sodium:proton antiporter activity	2.25E-02
102	GO:0008194: UDP-glycosyltransferase activity	2.36E-02
103	GO:0016791: phosphatase activity	2.36E-02
104	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.46E-02
105	GO:0008237: metallopeptidase activity	2.46E-02
106	GO:0016887: ATPase activity	2.48E-02
107	GO:0016597: amino acid binding	2.57E-02
108	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.68E-02
109	GO:0005524: ATP binding	2.70E-02
110	GO:0004806: triglyceride lipase activity	3.00E-02
111	GO:0004721: phosphoprotein phosphatase activity	3.00E-02
112	GO:0008236: serine-type peptidase activity	3.11E-02
113	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.11E-02
114	GO:0000287: magnesium ion binding	3.21E-02
115	GO:0030145: manganese ion binding	3.58E-02
116	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.82E-02
117	GO:0004674: protein serine/threonine kinase activity	3.93E-02
118	GO:0000149: SNARE binding	4.07E-02
119	GO:0050661: NADP binding	4.19E-02
120	GO:0005507: copper ion binding	4.54E-02
121	GO:0005484: SNAP receptor activity	4.57E-02
122	GO:0035091: phosphatidylinositol binding	4.84E-02
123	GO:0005516: calmodulin binding	4.85E-02
124	GO:0005198: structural molecule activity	4.97E-02