Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071327: cellular response to trehalose stimulus0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:1900367: positive regulation of defense response to insect0.00E+00
4GO:2000031: regulation of salicylic acid mediated signaling pathway1.24E-06
5GO:0009626: plant-type hypersensitive response3.12E-06
6GO:0000187: activation of MAPK activity6.65E-06
7GO:0048194: Golgi vesicle budding6.65E-06
8GO:0080142: regulation of salicylic acid biosynthetic process1.25E-05
9GO:0006468: protein phosphorylation1.85E-05
10GO:0010225: response to UV-C2.06E-05
11GO:0031348: negative regulation of defense response2.42E-05
12GO:2000037: regulation of stomatal complex patterning4.39E-05
13GO:0018105: peptidyl-serine phosphorylation7.96E-05
14GO:0046777: protein autophosphorylation8.58E-05
15GO:0034975: protein folding in endoplasmic reticulum1.22E-04
16GO:0048482: plant ovule morphogenesis1.22E-04
17GO:0010365: positive regulation of ethylene biosynthetic process1.22E-04
18GO:0010421: hydrogen peroxide-mediated programmed cell death1.22E-04
19GO:0006562: proline catabolic process1.22E-04
20GO:1901183: positive regulation of camalexin biosynthetic process1.22E-04
21GO:0009270: response to humidity1.22E-04
22GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.44E-04
23GO:0007064: mitotic sister chromatid cohesion1.71E-04
24GO:0007166: cell surface receptor signaling pathway2.48E-04
25GO:0010229: inflorescence development2.65E-04
26GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.82E-04
27GO:0010133: proline catabolic process to glutamate2.82E-04
28GO:0010618: aerenchyma formation2.82E-04
29GO:0019725: cellular homeostasis2.82E-04
30GO:0002221: pattern recognition receptor signaling pathway2.82E-04
31GO:0007034: vacuolar transport3.00E-04
32GO:0009863: salicylic acid mediated signaling pathway4.18E-04
33GO:0010186: positive regulation of cellular defense response4.65E-04
34GO:0046621: negative regulation of organ growth4.65E-04
35GO:0034051: negative regulation of plant-type hypersensitive response4.65E-04
36GO:0045793: positive regulation of cell size4.65E-04
37GO:0035556: intracellular signal transduction5.46E-04
38GO:0009814: defense response, incompatible interaction5.53E-04
39GO:2000022: regulation of jasmonic acid mediated signaling pathway5.53E-04
40GO:0009625: response to insect6.02E-04
41GO:0010227: floral organ abscission6.02E-04
42GO:0002679: respiratory burst involved in defense response6.66E-04
43GO:0006537: glutamate biosynthetic process6.66E-04
44GO:0071323: cellular response to chitin6.66E-04
45GO:0060548: negative regulation of cell death8.84E-04
46GO:2000038: regulation of stomatal complex development8.84E-04
47GO:0009697: salicylic acid biosynthetic process1.12E-03
48GO:0030041: actin filament polymerization1.12E-03
49GO:0005513: detection of calcium ion1.12E-03
50GO:0048317: seed morphogenesis1.37E-03
51GO:1900425: negative regulation of defense response to bacterium1.37E-03
52GO:0010942: positive regulation of cell death1.37E-03
53GO:0001666: response to hypoxia1.42E-03
54GO:0009627: systemic acquired resistance1.58E-03
55GO:0010310: regulation of hydrogen peroxide metabolic process1.64E-03
56GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.64E-03
57GO:0009094: L-phenylalanine biosynthetic process1.64E-03
58GO:0042742: defense response to bacterium1.70E-03
59GO:0010468: regulation of gene expression1.82E-03
60GO:0009617: response to bacterium1.82E-03
61GO:0010161: red light signaling pathway1.92E-03
62GO:0071446: cellular response to salicylic acid stimulus1.92E-03
63GO:0032875: regulation of DNA endoreduplication2.22E-03
64GO:0045087: innate immune response2.33E-03
65GO:0010099: regulation of photomorphogenesis2.54E-03
66GO:0009056: catabolic process2.87E-03
67GO:0051865: protein autoubiquitination2.87E-03
68GO:0090333: regulation of stomatal closure2.87E-03
69GO:0010112: regulation of systemic acquired resistance2.87E-03
70GO:0051707: response to other organism2.99E-03
71GO:1900426: positive regulation of defense response to bacterium3.21E-03
72GO:0000165: MAPK cascade3.61E-03
73GO:0006952: defense response3.93E-03
74GO:0009682: induced systemic resistance3.94E-03
75GO:0006890: retrograde vesicle-mediated transport, Golgi to ER4.32E-03
76GO:0012501: programmed cell death4.32E-03
77GO:0002213: defense response to insect4.32E-03
78GO:0010105: negative regulation of ethylene-activated signaling pathway4.32E-03
79GO:0018107: peptidyl-threonine phosphorylation4.71E-03
80GO:0009266: response to temperature stimulus5.12E-03
81GO:0009751: response to salicylic acid5.34E-03
82GO:0070588: calcium ion transmembrane transport5.54E-03
83GO:0007165: signal transduction6.15E-03
84GO:0006487: protein N-linked glycosylation6.42E-03
85GO:0009116: nucleoside metabolic process6.42E-03
86GO:0016226: iron-sulfur cluster assembly7.81E-03
87GO:0071215: cellular response to abscisic acid stimulus8.30E-03
88GO:0019722: calcium-mediated signaling8.80E-03
89GO:0009789: positive regulation of abscisic acid-activated signaling pathway9.31E-03
90GO:0042147: retrograde transport, endosome to Golgi9.31E-03
91GO:0042631: cellular response to water deprivation9.83E-03
92GO:0000271: polysaccharide biosynthetic process9.83E-03
93GO:0045489: pectin biosynthetic process1.04E-02
94GO:0006470: protein dephosphorylation1.13E-02
95GO:0016567: protein ubiquitination1.19E-02
96GO:0002229: defense response to oomycetes1.20E-02
97GO:0010193: response to ozone1.20E-02
98GO:0006891: intra-Golgi vesicle-mediated transport1.20E-02
99GO:0030163: protein catabolic process1.32E-02
100GO:0006464: cellular protein modification process1.38E-02
101GO:0010029: regulation of seed germination1.62E-02
102GO:0009816: defense response to bacterium, incompatible interaction1.62E-02
103GO:0048573: photoperiodism, flowering1.75E-02
104GO:0008219: cell death1.88E-02
105GO:0080167: response to karrikin1.90E-02
106GO:0009867: jasmonic acid mediated signaling pathway2.23E-02
107GO:0016051: carbohydrate biosynthetic process2.23E-02
108GO:0045454: cell redox homeostasis2.28E-02
109GO:0030001: metal ion transport2.44E-02
110GO:0042542: response to hydrogen peroxide2.59E-02
111GO:0016042: lipid catabolic process2.73E-02
112GO:0006855: drug transmembrane transport2.98E-02
113GO:0031347: regulation of defense response3.06E-02
114GO:0009846: pollen germination3.14E-02
115GO:0009585: red, far-red light phototransduction3.30E-02
116GO:0010224: response to UV-B3.38E-02
117GO:0009624: response to nematode4.24E-02
118GO:0009738: abscisic acid-activated signaling pathway4.79E-02
RankGO TermAdjusted P value
1GO:0016301: kinase activity1.51E-06
2GO:0005509: calcium ion binding7.26E-06
3GO:0004012: phospholipid-translocating ATPase activity4.39E-05
4GO:0004674: protein serine/threonine kinase activity7.04E-05
5GO:0004708: MAP kinase kinase activity7.70E-05
6GO:0005524: ATP binding1.10E-04
7GO:0015085: calcium ion transmembrane transporter activity1.22E-04
8GO:0004657: proline dehydrogenase activity1.22E-04
9GO:0009931: calcium-dependent protein serine/threonine kinase activity1.32E-04
10GO:0004683: calmodulin-dependent protein kinase activity1.43E-04
11GO:0005515: protein binding2.02E-04
12GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.65E-04
13GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity6.66E-04
14GO:0015035: protein disulfide oxidoreductase activity7.69E-04
15GO:0047769: arogenate dehydratase activity8.84E-04
16GO:0004664: prephenate dehydratase activity8.84E-04
17GO:0005516: calmodulin binding1.01E-03
18GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.27E-03
19GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.34E-03
20GO:0008375: acetylglucosaminyltransferase activity1.58E-03
21GO:0004721: phosphoprotein phosphatase activity1.67E-03
22GO:0102425: myricetin 3-O-glucosyltransferase activity1.92E-03
23GO:0102360: daphnetin 3-O-glucosyltransferase activity1.92E-03
24GO:0005544: calcium-dependent phospholipid binding2.22E-03
25GO:0047893: flavonol 3-O-glucosyltransferase activity2.22E-03
26GO:0043531: ADP binding2.84E-03
27GO:0016298: lipase activity4.16E-03
28GO:0005388: calcium-transporting ATPase activity4.71E-03
29GO:0003924: GTPase activity5.44E-03
30GO:0004190: aspartic-type endopeptidase activity5.54E-03
31GO:0008061: chitin binding5.54E-03
32GO:0043130: ubiquitin binding6.42E-03
33GO:0016758: transferase activity, transferring hexosyl groups6.95E-03
34GO:0035251: UDP-glucosyltransferase activity7.34E-03
35GO:0004707: MAP kinase activity7.34E-03
36GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity7.81E-03
37GO:0003756: protein disulfide isomerase activity8.80E-03
38GO:0004672: protein kinase activity1.25E-02
39GO:0004197: cysteine-type endopeptidase activity1.26E-02
40GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.32E-02
41GO:0016757: transferase activity, transferring glycosyl groups1.44E-02
42GO:0016597: amino acid binding1.50E-02
43GO:0000287: magnesium ion binding1.50E-02
44GO:0003682: chromatin binding1.62E-02
45GO:0030246: carbohydrate binding1.64E-02
46GO:0004806: triglyceride lipase activity1.75E-02
47GO:0030247: polysaccharide binding1.75E-02
48GO:0015238: drug transmembrane transporter activity1.95E-02
49GO:0052689: carboxylic ester hydrolase activity2.10E-02
50GO:0005525: GTP binding2.12E-02
51GO:0004722: protein serine/threonine phosphatase activity2.50E-02
52GO:0051537: 2 iron, 2 sulfur cluster binding2.82E-02
53GO:0009055: electron carrier activity3.01E-02
54GO:0080043: quercetin 3-O-glucosyltransferase activity3.98E-02
55GO:0080044: quercetin 7-O-glucosyltransferase activity3.98E-02
56GO:0003779: actin binding4.15E-02
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Gene type



Gene DE type