Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0015871: choline transport0.00E+00
3GO:0090470: shoot organ boundary specification0.00E+00
4GO:0007037: vacuolar phosphate transport0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
8GO:0042407: cristae formation0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0042817: pyridoxal metabolic process0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
14GO:0008618: 7-methylguanosine metabolic process0.00E+00
15GO:0071474: cellular hyperosmotic response0.00E+00
16GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
17GO:0036265: RNA (guanine-N7)-methylation0.00E+00
18GO:0015995: chlorophyll biosynthetic process2.07E-07
19GO:0030488: tRNA methylation3.73E-06
20GO:0006782: protoporphyrinogen IX biosynthetic process3.15E-05
21GO:0045038: protein import into chloroplast thylakoid membrane1.01E-04
22GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.47E-04
23GO:0009395: phospholipid catabolic process2.60E-04
24GO:0000476: maturation of 4.5S rRNA3.17E-04
25GO:0000967: rRNA 5'-end processing3.17E-04
26GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.17E-04
27GO:0006659: phosphatidylserine biosynthetic process3.17E-04
28GO:0042547: cell wall modification involved in multidimensional cell growth3.17E-04
29GO:1902458: positive regulation of stomatal opening3.17E-04
30GO:0005991: trehalose metabolic process3.17E-04
31GO:0006747: FAD biosynthetic process3.17E-04
32GO:0010206: photosystem II repair4.84E-04
33GO:0006779: porphyrin-containing compound biosynthetic process5.72E-04
34GO:1900865: chloroplast RNA modification5.72E-04
35GO:0034470: ncRNA processing6.92E-04
36GO:0010198: synergid death6.92E-04
37GO:0006739: NADP metabolic process6.92E-04
38GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole6.92E-04
39GO:0006432: phenylalanyl-tRNA aminoacylation6.92E-04
40GO:0090603: sieve element differentiation6.92E-04
41GO:0007154: cell communication6.92E-04
42GO:0018026: peptidyl-lysine monomethylation6.92E-04
43GO:0034755: iron ion transmembrane transport6.92E-04
44GO:0006423: cysteinyl-tRNA aminoacylation6.92E-04
45GO:0006435: threonyl-tRNA aminoacylation6.92E-04
46GO:0090342: regulation of cell aging6.92E-04
47GO:0080183: response to photooxidative stress6.92E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process6.92E-04
49GO:0051262: protein tetramerization6.92E-04
50GO:0009089: lysine biosynthetic process via diaminopimelate7.70E-04
51GO:0009627: systemic acquired resistance7.94E-04
52GO:0033591: response to L-ascorbic acid1.12E-03
53GO:0009663: plasmodesma organization1.12E-03
54GO:0034051: negative regulation of plant-type hypersensitive response1.12E-03
55GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.12E-03
56GO:0001578: microtubule bundle formation1.12E-03
57GO:0045493: xylan catabolic process1.12E-03
58GO:0030261: chromosome condensation1.12E-03
59GO:0090351: seedling development1.25E-03
60GO:0009226: nucleotide-sugar biosynthetic process1.61E-03
61GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.61E-03
62GO:0008615: pyridoxine biosynthetic process1.61E-03
63GO:0006164: purine nucleotide biosynthetic process1.61E-03
64GO:0010088: phloem development1.61E-03
65GO:0010371: regulation of gibberellin biosynthetic process1.61E-03
66GO:0009102: biotin biosynthetic process1.61E-03
67GO:0016042: lipid catabolic process1.90E-03
68GO:0051322: anaphase2.16E-03
69GO:0009765: photosynthesis, light harvesting2.16E-03
70GO:0006021: inositol biosynthetic process2.16E-03
71GO:0007020: microtubule nucleation2.16E-03
72GO:0071483: cellular response to blue light2.16E-03
73GO:0006734: NADH metabolic process2.16E-03
74GO:0010109: regulation of photosynthesis2.16E-03
75GO:0006855: drug transmembrane transport2.17E-03
76GO:0006465: signal peptide processing2.76E-03
77GO:0046785: microtubule polymerization2.76E-03
78GO:0016120: carotene biosynthetic process2.76E-03
79GO:0016123: xanthophyll biosynthetic process2.76E-03
80GO:0009658: chloroplast organization3.20E-03
81GO:0016554: cytidine to uridine editing3.40E-03
82GO:0009228: thiamine biosynthetic process3.40E-03
83GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.40E-03
84GO:0009955: adaxial/abaxial pattern specification4.10E-03
85GO:0009082: branched-chain amino acid biosynthetic process4.10E-03
86GO:0034389: lipid particle organization4.10E-03
87GO:1901259: chloroplast rRNA processing4.10E-03
88GO:0009099: valine biosynthetic process4.10E-03
89GO:0009648: photoperiodism4.10E-03
90GO:0010310: regulation of hydrogen peroxide metabolic process4.10E-03
91GO:0048528: post-embryonic root development4.84E-03
92GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.84E-03
93GO:0006400: tRNA modification4.84E-03
94GO:0010027: thylakoid membrane organization5.44E-03
95GO:0048564: photosystem I assembly5.62E-03
96GO:0006605: protein targeting5.62E-03
97GO:0070413: trehalose metabolism in response to stress5.62E-03
98GO:2000070: regulation of response to water deprivation5.62E-03
99GO:0009231: riboflavin biosynthetic process5.62E-03
100GO:0052543: callose deposition in cell wall5.62E-03
101GO:0009932: cell tip growth6.44E-03
102GO:0071482: cellular response to light stimulus6.44E-03
103GO:0022900: electron transport chain6.44E-03
104GO:0009097: isoleucine biosynthetic process6.44E-03
105GO:0032544: plastid translation6.44E-03
106GO:0009821: alkaloid biosynthetic process7.30E-03
107GO:0019432: triglyceride biosynthetic process7.30E-03
108GO:0006783: heme biosynthetic process7.30E-03
109GO:0043067: regulation of programmed cell death8.21E-03
110GO:0009098: leucine biosynthetic process8.21E-03
111GO:0010629: negative regulation of gene expression9.15E-03
112GO:0006949: syncytium formation9.15E-03
113GO:0019684: photosynthesis, light reaction1.01E-02
114GO:0008285: negative regulation of cell proliferation1.01E-02
115GO:1903507: negative regulation of nucleic acid-templated transcription1.01E-02
116GO:0006879: cellular iron ion homeostasis1.01E-02
117GO:0006352: DNA-templated transcription, initiation1.01E-02
118GO:0018119: peptidyl-cysteine S-nitrosylation1.01E-02
119GO:0009684: indoleacetic acid biosynthetic process1.01E-02
120GO:0006631: fatty acid metabolic process1.07E-02
121GO:0016024: CDP-diacylglycerol biosynthetic process1.11E-02
122GO:0045037: protein import into chloroplast stroma1.11E-02
123GO:0009793: embryo development ending in seed dormancy1.17E-02
124GO:0009725: response to hormone1.22E-02
125GO:0010143: cutin biosynthetic process1.33E-02
126GO:0071732: cellular response to nitric oxide1.44E-02
127GO:0006071: glycerol metabolic process1.56E-02
128GO:0006364: rRNA processing1.57E-02
129GO:0051603: proteolysis involved in cellular protein catabolic process1.63E-02
130GO:0006289: nucleotide-excision repair1.67E-02
131GO:0005992: trehalose biosynthetic process1.67E-02
132GO:0008299: isoprenoid biosynthetic process1.80E-02
133GO:0006418: tRNA aminoacylation for protein translation1.80E-02
134GO:0043622: cortical microtubule organization1.80E-02
135GO:0007017: microtubule-based process1.80E-02
136GO:0010073: meristem maintenance1.80E-02
137GO:0080167: response to karrikin1.88E-02
138GO:0061077: chaperone-mediated protein folding1.92E-02
139GO:0016114: terpenoid biosynthetic process1.92E-02
140GO:0048511: rhythmic process1.92E-02
141GO:0010431: seed maturation1.92E-02
142GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.96E-02
143GO:0009814: defense response, incompatible interaction2.05E-02
144GO:2000022: regulation of jasmonic acid mediated signaling pathway2.05E-02
145GO:0035428: hexose transmembrane transport2.05E-02
146GO:0006730: one-carbon metabolic process2.05E-02
147GO:0031348: negative regulation of defense response2.05E-02
148GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.18E-02
149GO:0071369: cellular response to ethylene stimulus2.18E-02
150GO:0010227: floral organ abscission2.18E-02
151GO:0009306: protein secretion2.31E-02
152GO:0016117: carotenoid biosynthetic process2.45E-02
153GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.45E-02
154GO:0042335: cuticle development2.59E-02
155GO:0010051: xylem and phloem pattern formation2.59E-02
156GO:0055085: transmembrane transport2.72E-02
157GO:0010197: polar nucleus fusion2.73E-02
158GO:0010182: sugar mediated signaling pathway2.73E-02
159GO:0046323: glucose import2.73E-02
160GO:0009741: response to brassinosteroid2.73E-02
161GO:0007018: microtubule-based movement2.88E-02
162GO:0042752: regulation of circadian rhythm2.88E-02
163GO:0009646: response to absence of light2.88E-02
164GO:0009791: post-embryonic development3.02E-02
165GO:0008654: phospholipid biosynthetic process3.02E-02
166GO:0000302: response to reactive oxygen species3.17E-02
167GO:0009790: embryo development3.28E-02
168GO:0016032: viral process3.32E-02
169GO:0030163: protein catabolic process3.48E-02
170GO:0071281: cellular response to iron ion3.48E-02
171GO:0010090: trichome morphogenesis3.48E-02
172GO:0006413: translational initiation3.61E-02
173GO:0009828: plant-type cell wall loosening3.64E-02
174GO:0010286: heat acclimation3.80E-02
175GO:0071805: potassium ion transmembrane transport3.80E-02
176GO:0045490: pectin catabolic process3.87E-02
177GO:0046686: response to cadmium ion3.90E-02
178GO:0000910: cytokinesis3.96E-02
179GO:0010228: vegetative to reproductive phase transition of meristem4.05E-02
180GO:0016126: sterol biosynthetic process4.12E-02
181GO:0007166: cell surface receptor signaling pathway4.42E-02
182GO:0008380: RNA splicing4.61E-02
183GO:0010411: xyloglucan metabolic process4.63E-02
184GO:0048481: plant ovule development4.98E-02
185GO:0018298: protein-chromophore linkage4.98E-02
RankGO TermAdjusted P value
1GO:0004076: biotin synthase activity0.00E+00
2GO:0003937: IMP cyclohydrolase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0043864: indoleacetamide hydrolase activity0.00E+00
5GO:0015220: choline transmembrane transporter activity0.00E+00
6GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
13GO:0008176: tRNA (guanine-N7-)-methyltransferase activity0.00E+00
14GO:0005048: signal sequence binding0.00E+00
15GO:0016788: hydrolase activity, acting on ester bonds1.60E-06
16GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.55E-06
17GO:0070402: NADPH binding1.62E-05
18GO:0016851: magnesium chelatase activity3.61E-05
19GO:0004040: amidase activity1.01E-04
20GO:0005227: calcium activated cation channel activity3.17E-04
21GO:0004733: pyridoxamine-phosphate oxidase activity3.17E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.17E-04
23GO:0009496: plastoquinol--plastocyanin reductase activity3.17E-04
24GO:0004853: uroporphyrinogen decarboxylase activity3.17E-04
25GO:0052856: NADHX epimerase activity3.17E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.17E-04
27GO:0052857: NADPHX epimerase activity3.17E-04
28GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.17E-04
29GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity3.17E-04
30GO:0005525: GTP binding3.47E-04
31GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.92E-04
32GO:0004817: cysteine-tRNA ligase activity6.92E-04
33GO:0003919: FMN adenylyltransferase activity6.92E-04
34GO:0004829: threonine-tRNA ligase activity6.92E-04
35GO:0004826: phenylalanine-tRNA ligase activity6.92E-04
36GO:0004512: inositol-3-phosphate synthase activity6.92E-04
37GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.92E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity6.92E-04
39GO:0000049: tRNA binding8.79E-04
40GO:0015462: ATPase-coupled protein transmembrane transporter activity1.12E-03
41GO:0005504: fatty acid binding1.12E-03
42GO:0003913: DNA photolyase activity1.12E-03
43GO:0002161: aminoacyl-tRNA editing activity1.12E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.12E-03
45GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.12E-03
46GO:0052689: carboxylic ester hydrolase activity1.20E-03
47GO:0003993: acid phosphatase activity1.37E-03
48GO:0005528: FK506 binding1.54E-03
49GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.61E-03
50GO:0052656: L-isoleucine transaminase activity1.61E-03
51GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.61E-03
52GO:0052654: L-leucine transaminase activity1.61E-03
53GO:0052655: L-valine transaminase activity1.61E-03
54GO:0001872: (1->3)-beta-D-glucan binding1.61E-03
55GO:0004045: aminoacyl-tRNA hydrolase activity2.16E-03
56GO:0016987: sigma factor activity2.16E-03
57GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.16E-03
58GO:0070628: proteasome binding2.16E-03
59GO:0045430: chalcone isomerase activity2.16E-03
60GO:0004084: branched-chain-amino-acid transaminase activity2.16E-03
61GO:0009044: xylan 1,4-beta-xylosidase activity2.16E-03
62GO:0046556: alpha-L-arabinofuranosidase activity2.16E-03
63GO:0016279: protein-lysine N-methyltransferase activity2.16E-03
64GO:0001053: plastid sigma factor activity2.16E-03
65GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.17E-03
66GO:0030570: pectate lyase activity2.22E-03
67GO:0031593: polyubiquitin binding3.40E-03
68GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.40E-03
69GO:0042578: phosphoric ester hydrolase activity3.40E-03
70GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.40E-03
71GO:0004017: adenylate kinase activity4.10E-03
72GO:0016832: aldehyde-lyase activity4.10E-03
73GO:0004144: diacylglycerol O-acyltransferase activity4.10E-03
74GO:0005261: cation channel activity4.10E-03
75GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.10E-03
76GO:0016791: phosphatase activity4.56E-03
77GO:0009881: photoreceptor activity4.84E-03
78GO:0008312: 7S RNA binding5.62E-03
79GO:0043022: ribosome binding5.62E-03
80GO:0005337: nucleoside transmembrane transporter activity5.62E-03
81GO:0030247: polysaccharide binding6.41E-03
82GO:0008173: RNA methyltransferase activity6.44E-03
83GO:0008236: serine-type peptidase activity6.75E-03
84GO:0015238: drug transmembrane transporter activity7.46E-03
85GO:0003924: GTPase activity8.04E-03
86GO:0004743: pyruvate kinase activity8.21E-03
87GO:0005381: iron ion transmembrane transporter activity8.21E-03
88GO:0030955: potassium ion binding8.21E-03
89GO:0016844: strictosidine synthase activity8.21E-03
90GO:0008017: microtubule binding8.70E-03
91GO:0008559: xenobiotic-transporting ATPase activity1.01E-02
92GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.11E-02
93GO:0004185: serine-type carboxypeptidase activity1.16E-02
94GO:0051537: 2 iron, 2 sulfur cluster binding1.26E-02
95GO:0003723: RNA binding1.49E-02
96GO:0004857: enzyme inhibitor activity1.67E-02
97GO:0043130: ubiquitin binding1.67E-02
98GO:0003714: transcription corepressor activity1.67E-02
99GO:0051536: iron-sulfur cluster binding1.67E-02
100GO:0003777: microtubule motor activity1.74E-02
101GO:0015079: potassium ion transmembrane transporter activity1.80E-02
102GO:0022891: substrate-specific transmembrane transporter activity2.18E-02
103GO:0004812: aminoacyl-tRNA ligase activity2.45E-02
104GO:0016853: isomerase activity2.88E-02
105GO:0005355: glucose transmembrane transporter activity2.88E-02
106GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.88E-02
107GO:0010181: FMN binding2.88E-02
108GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.89E-02
109GO:0004872: receptor activity3.02E-02
110GO:0016829: lyase activity3.04E-02
111GO:0004252: serine-type endopeptidase activity3.12E-02
112GO:0004519: endonuclease activity3.40E-02
113GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.61E-02
114GO:0003684: damaged DNA binding3.64E-02
115GO:0015297: antiporter activity3.70E-02
116GO:0008483: transaminase activity3.80E-02
117GO:0005200: structural constituent of cytoskeleton3.80E-02
118GO:0003743: translation initiation factor activity4.51E-02
<
Gene type



Gene DE type