Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0046460: neutral lipid biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
10GO:0044249: cellular biosynthetic process0.00E+00
11GO:0042407: cristae formation0.00E+00
12GO:0090042: tubulin deacetylation0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0009658: chloroplast organization5.26E-10
16GO:0009657: plastid organization2.23E-08
17GO:0009734: auxin-activated signaling pathway1.21E-06
18GO:0042793: transcription from plastid promoter1.22E-05
19GO:1900871: chloroplast mRNA modification1.65E-05
20GO:0042026: protein refolding2.06E-05
21GO:0009733: response to auxin3.96E-05
22GO:0046620: regulation of organ growth4.67E-05
23GO:0006353: DNA-templated transcription, termination4.67E-05
24GO:0040008: regulation of growth7.59E-05
25GO:1900865: chloroplast RNA modification1.14E-04
26GO:0010306: rhamnogalacturonan II biosynthetic process1.15E-04
27GO:0016556: mRNA modification1.15E-04
28GO:0009793: embryo development ending in seed dormancy2.55E-04
29GO:2000012: regulation of auxin polar transport2.63E-04
30GO:0010027: thylakoid membrane organization3.80E-04
31GO:0006418: tRNA aminoacylation for protein translation5.49E-04
32GO:0006458: 'de novo' protein folding5.51E-04
33GO:2000021: regulation of ion homeostasis6.19E-04
34GO:0006436: tryptophanyl-tRNA aminoacylation6.19E-04
35GO:1902458: positive regulation of stomatal opening6.19E-04
36GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.19E-04
37GO:0006419: alanyl-tRNA aminoacylation6.19E-04
38GO:0000476: maturation of 4.5S rRNA6.19E-04
39GO:0000967: rRNA 5'-end processing6.19E-04
40GO:2000025: regulation of leaf formation6.19E-04
41GO:0070509: calcium ion import6.19E-04
42GO:0006438: valyl-tRNA aminoacylation6.19E-04
43GO:0043266: regulation of potassium ion transport6.19E-04
44GO:0006824: cobalt ion transport6.19E-04
45GO:0042547: cell wall modification involved in multidimensional cell growth6.19E-04
46GO:0019478: D-amino acid catabolic process6.19E-04
47GO:0042371: vitamin K biosynthetic process6.19E-04
48GO:0000105: histidine biosynthetic process8.76E-04
49GO:0008033: tRNA processing1.06E-03
50GO:0048868: pollen tube development1.16E-03
51GO:0009926: auxin polar transport1.22E-03
52GO:0000373: Group II intron splicing1.27E-03
53GO:0001682: tRNA 5'-leader removal1.33E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.33E-03
55GO:0034470: ncRNA processing1.33E-03
56GO:0010198: synergid death1.33E-03
57GO:0060359: response to ammonium ion1.33E-03
58GO:0018026: peptidyl-lysine monomethylation1.33E-03
59GO:0034755: iron ion transmembrane transport1.33E-03
60GO:0006423: cysteinyl-tRNA aminoacylation1.33E-03
61GO:0009220: pyrimidine ribonucleotide biosynthetic process1.33E-03
62GO:0009790: embryo development1.41E-03
63GO:0006415: translational termination2.04E-03
64GO:0006760: folic acid-containing compound metabolic process2.19E-03
65GO:0043157: response to cation stress2.19E-03
66GO:0005977: glycogen metabolic process2.19E-03
67GO:0045910: negative regulation of DNA recombination2.19E-03
68GO:0048281: inflorescence morphogenesis2.19E-03
69GO:0006954: inflammatory response2.19E-03
70GO:0010623: programmed cell death involved in cell development2.19E-03
71GO:0007275: multicellular organism development2.41E-03
72GO:0009627: systemic acquired resistance2.82E-03
73GO:0010207: photosystem II assembly3.00E-03
74GO:0010020: chloroplast fission3.00E-03
75GO:0051085: chaperone mediated protein folding requiring cofactor3.19E-03
76GO:0010239: chloroplast mRNA processing3.19E-03
77GO:0009226: nucleotide-sugar biosynthetic process3.19E-03
78GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.19E-03
79GO:0010148: transpiration3.19E-03
80GO:2001141: regulation of RNA biosynthetic process3.19E-03
81GO:0071732: cellular response to nitric oxide3.37E-03
82GO:0051781: positive regulation of cell division4.30E-03
83GO:0042274: ribosomal small subunit biogenesis4.30E-03
84GO:0046656: folic acid biosynthetic process4.30E-03
85GO:0022622: root system development4.30E-03
86GO:0010508: positive regulation of autophagy4.30E-03
87GO:0044205: 'de novo' UMP biosynthetic process4.30E-03
88GO:0010021: amylopectin biosynthetic process4.30E-03
89GO:0061077: chaperone-mediated protein folding5.08E-03
90GO:0009107: lipoate biosynthetic process5.52E-03
91GO:0016123: xanthophyll biosynthetic process5.52E-03
92GO:0010158: abaxial cell fate specification5.52E-03
93GO:0032543: mitochondrial translation5.52E-03
94GO:0010236: plastoquinone biosynthetic process5.52E-03
95GO:0045038: protein import into chloroplast thylakoid membrane5.52E-03
96GO:0007005: mitochondrion organization5.56E-03
97GO:0071369: cellular response to ethylene stimulus6.07E-03
98GO:0009959: negative gravitropism6.85E-03
99GO:0006655: phosphatidylglycerol biosynthetic process6.85E-03
100GO:0016554: cytidine to uridine editing6.85E-03
101GO:0032973: amino acid export6.85E-03
102GO:0050665: hydrogen peroxide biosynthetic process6.85E-03
103GO:0005975: carbohydrate metabolic process7.20E-03
104GO:0009451: RNA modification7.98E-03
105GO:0080086: stamen filament development8.28E-03
106GO:0009648: photoperiodism8.28E-03
107GO:0019509: L-methionine salvage from methylthioadenosine8.28E-03
108GO:0042372: phylloquinone biosynthetic process8.28E-03
109GO:0017148: negative regulation of translation8.28E-03
110GO:0009942: longitudinal axis specification8.28E-03
111GO:0034389: lipid particle organization8.28E-03
112GO:0046654: tetrahydrofolate biosynthetic process8.28E-03
113GO:1901259: chloroplast rRNA processing8.28E-03
114GO:0030488: tRNA methylation8.28E-03
115GO:0009854: oxidative photosynthetic carbon pathway8.28E-03
116GO:0009664: plant-type cell wall organization8.65E-03
117GO:0006508: proteolysis8.70E-03
118GO:0010103: stomatal complex morphogenesis9.81E-03
119GO:0032880: regulation of protein localization9.81E-03
120GO:0048528: post-embryonic root development9.81E-03
121GO:0007050: cell cycle arrest9.81E-03
122GO:0009772: photosynthetic electron transport in photosystem II9.81E-03
123GO:0043090: amino acid import9.81E-03
124GO:0070370: cellular heat acclimation9.81E-03
125GO:0010050: vegetative phase change9.81E-03
126GO:0010196: nonphotochemical quenching9.81E-03
127GO:0010444: guard mother cell differentiation9.81E-03
128GO:0006400: tRNA modification9.81E-03
129GO:0030307: positive regulation of cell growth9.81E-03
130GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.81E-03
131GO:0009630: gravitropism1.11E-02
132GO:0010583: response to cyclopentenone1.11E-02
133GO:0031540: regulation of anthocyanin biosynthetic process1.14E-02
134GO:0048564: photosystem I assembly1.14E-02
135GO:0009850: auxin metabolic process1.14E-02
136GO:0042255: ribosome assembly1.14E-02
137GO:0070413: trehalose metabolism in response to stress1.14E-02
138GO:2000070: regulation of response to water deprivation1.14E-02
139GO:1901657: glycosyl compound metabolic process1.18E-02
140GO:0071281: cellular response to iron ion1.18E-02
141GO:0010252: auxin homeostasis1.26E-02
142GO:0009828: plant-type cell wall loosening1.26E-02
143GO:0009932: cell tip growth1.32E-02
144GO:0071482: cellular response to light stimulus1.32E-02
145GO:0001558: regulation of cell growth1.32E-02
146GO:0006526: arginine biosynthetic process1.32E-02
147GO:0010204: defense response signaling pathway, resistance gene-independent1.32E-02
148GO:0032544: plastid translation1.32E-02
149GO:0007389: pattern specification process1.32E-02
150GO:0000902: cell morphogenesis1.50E-02
151GO:0080144: amino acid homeostasis1.50E-02
152GO:0006098: pentose-phosphate shunt1.50E-02
153GO:0019432: triglyceride biosynthetic process1.50E-02
154GO:0006783: heme biosynthetic process1.50E-02
155GO:0009638: phototropism1.68E-02
156GO:0043067: regulation of programmed cell death1.68E-02
157GO:0042761: very long-chain fatty acid biosynthetic process1.68E-02
158GO:0006779: porphyrin-containing compound biosynthetic process1.68E-02
159GO:0031425: chloroplast RNA processing1.68E-02
160GO:0045036: protein targeting to chloroplast1.88E-02
161GO:0006298: mismatch repair1.88E-02
162GO:0006949: syncytium formation1.88E-02
163GO:0006259: DNA metabolic process1.88E-02
164GO:0006535: cysteine biosynthetic process from serine1.88E-02
165GO:0006782: protoporphyrinogen IX biosynthetic process1.88E-02
166GO:0010015: root morphogenesis2.08E-02
167GO:0006265: DNA topological change2.08E-02
168GO:0009073: aromatic amino acid family biosynthetic process2.08E-02
169GO:1903507: negative regulation of nucleic acid-templated transcription2.08E-02
170GO:0006352: DNA-templated transcription, initiation2.08E-02
171GO:0016024: CDP-diacylglycerol biosynthetic process2.30E-02
172GO:0045037: protein import into chloroplast stroma2.30E-02
173GO:0010582: floral meristem determinacy2.30E-02
174GO:0010229: inflorescence development2.52E-02
175GO:0050826: response to freezing2.52E-02
176GO:0006094: gluconeogenesis2.52E-02
177GO:0009785: blue light signaling pathway2.52E-02
178GO:0009691: cytokinin biosynthetic process2.52E-02
179GO:0048467: gynoecium development2.74E-02
180GO:0007623: circadian rhythm2.97E-02
181GO:0090351: seedling development2.97E-02
182GO:0070588: calcium ion transmembrane transport2.97E-02
183GO:0009416: response to light stimulus3.15E-02
184GO:0006071: glycerol metabolic process3.21E-02
185GO:0000162: tryptophan biosynthetic process3.21E-02
186GO:0010025: wax biosynthetic process3.21E-02
187GO:0042023: DNA endoreduplication3.21E-02
188GO:0010114: response to red light3.23E-02
189GO:0005992: trehalose biosynthetic process3.46E-02
190GO:0019344: cysteine biosynthetic process3.46E-02
191GO:0009116: nucleoside metabolic process3.46E-02
192GO:0009944: polarity specification of adaxial/abaxial axis3.46E-02
193GO:0030150: protein import into mitochondrial matrix3.46E-02
194GO:0007010: cytoskeleton organization3.46E-02
195GO:0009965: leaf morphogenesis3.63E-02
196GO:0051302: regulation of cell division3.71E-02
197GO:0019953: sexual reproduction3.71E-02
198GO:0016575: histone deacetylation3.71E-02
199GO:0015992: proton transport3.97E-02
200GO:0048511: rhythmic process3.97E-02
201GO:0016998: cell wall macromolecule catabolic process3.97E-02
202GO:0071555: cell wall organization4.21E-02
203GO:0031348: negative regulation of defense response4.23E-02
204GO:0009814: defense response, incompatible interaction4.23E-02
205GO:0016226: iron-sulfur cluster assembly4.23E-02
206GO:2000022: regulation of jasmonic acid mediated signaling pathway4.23E-02
207GO:0006730: one-carbon metabolic process4.23E-02
208GO:0006364: rRNA processing4.34E-02
209GO:0051603: proteolysis involved in cellular protein catabolic process4.49E-02
210GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.50E-02
211GO:0010082: regulation of root meristem growth4.50E-02
212GO:0009686: gibberellin biosynthetic process4.50E-02
213GO:0001944: vasculature development4.50E-02
214GO:0010089: xylem development4.78E-02
215GO:0009306: protein secretion4.78E-02
216GO:0009826: unidimensional cell growth4.85E-02
RankGO TermAdjusted P value
1GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
2GO:0015267: channel activity0.00E+00
3GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
4GO:0004358: glutamate N-acetyltransferase activity0.00E+00
5GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
6GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
7GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
8GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
9GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0042903: tubulin deacetylase activity0.00E+00
14GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
15GO:0004418: hydroxymethylbilane synthase activity0.00E+00
16GO:0004823: leucine-tRNA ligase activity0.00E+00
17GO:0004056: argininosuccinate lyase activity0.00E+00
18GO:0004176: ATP-dependent peptidase activity5.51E-05
19GO:0016149: translation release factor activity, codon specific1.15E-04
20GO:0044183: protein binding involved in protein folding1.79E-04
21GO:0008237: metallopeptidase activity3.14E-04
22GO:0004519: endonuclease activity3.73E-04
23GO:0003723: RNA binding4.79E-04
24GO:0005227: calcium activated cation channel activity6.19E-04
25GO:0051777: ent-kaurenoate oxidase activity6.19E-04
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity6.19E-04
27GO:0004813: alanine-tRNA ligase activity6.19E-04
28GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.19E-04
29GO:0004832: valine-tRNA ligase activity6.19E-04
30GO:0052381: tRNA dimethylallyltransferase activity6.19E-04
31GO:0004830: tryptophan-tRNA ligase activity6.19E-04
32GO:0004812: aminoacyl-tRNA ligase activity9.60E-04
33GO:0003747: translation release factor activity1.27E-03
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.33E-03
35GO:0009977: proton motive force dependent protein transmembrane transporter activity1.33E-03
36GO:0016415: octanoyltransferase activity1.33E-03
37GO:0004047: aminomethyltransferase activity1.33E-03
38GO:0102083: 7,8-dihydromonapterin aldolase activity1.33E-03
39GO:0004817: cysteine-tRNA ligase activity1.33E-03
40GO:0019156: isoamylase activity1.33E-03
41GO:0004150: dihydroneopterin aldolase activity1.33E-03
42GO:0010291: carotene beta-ring hydroxylase activity1.33E-03
43GO:0017118: lipoyltransferase activity1.33E-03
44GO:0043621: protein self-association1.38E-03
45GO:0052692: raffinose alpha-galactosidase activity2.19E-03
46GO:0070330: aromatase activity2.19E-03
47GO:0002161: aminoacyl-tRNA editing activity2.19E-03
48GO:0004557: alpha-galactosidase activity2.19E-03
49GO:0016887: ATPase activity2.81E-03
50GO:0043023: ribosomal large subunit binding3.19E-03
51GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.19E-03
52GO:0001872: (1->3)-beta-D-glucan binding3.19E-03
53GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.19E-03
54GO:0019201: nucleotide kinase activity3.19E-03
55GO:0009678: hydrogen-translocating pyrophosphatase activity3.19E-03
56GO:0048487: beta-tubulin binding3.19E-03
57GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.19E-03
58GO:0004222: metalloendopeptidase activity3.90E-03
59GO:0004659: prenyltransferase activity4.30E-03
60GO:0016279: protein-lysine N-methyltransferase activity4.30E-03
61GO:0001053: plastid sigma factor activity4.30E-03
62GO:0004045: aminoacyl-tRNA hydrolase activity4.30E-03
63GO:0016987: sigma factor activity4.30E-03
64GO:0019199: transmembrane receptor protein kinase activity4.30E-03
65GO:0042277: peptide binding4.30E-03
66GO:0008891: glycolate oxidase activity4.30E-03
67GO:0019843: rRNA binding4.71E-03
68GO:0016829: lyase activity5.31E-03
69GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.52E-03
70GO:0045300: acyl-[acyl-carrier-protein] desaturase activity5.52E-03
71GO:0018685: alkane 1-monooxygenase activity5.52E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor5.52E-03
73GO:0004040: amidase activity5.52E-03
74GO:0030570: pectate lyase activity6.07E-03
75GO:0030983: mismatched DNA binding6.85E-03
76GO:0004605: phosphatidate cytidylyltransferase activity6.85E-03
77GO:0080030: methyl indole-3-acetate esterase activity6.85E-03
78GO:0004332: fructose-bisphosphate aldolase activity6.85E-03
79GO:0004526: ribonuclease P activity6.85E-03
80GO:0004556: alpha-amylase activity6.85E-03
81GO:0004124: cysteine synthase activity8.28E-03
82GO:0008195: phosphatidate phosphatase activity8.28E-03
83GO:0004017: adenylate kinase activity8.28E-03
84GO:0004144: diacylglycerol O-acyltransferase activity8.28E-03
85GO:0004427: inorganic diphosphatase activity9.81E-03
86GO:0043022: ribosome binding1.14E-02
87GO:0003684: damaged DNA binding1.26E-02
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.32E-02
89GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.32E-02
90GO:0016597: amino acid binding1.42E-02
91GO:0051082: unfolded protein binding1.49E-02
92GO:0009672: auxin:proton symporter activity1.68E-02
93GO:0005381: iron ion transmembrane transporter activity1.68E-02
94GO:0102483: scopolin beta-glucosidase activity1.78E-02
95GO:0004805: trehalose-phosphatase activity1.88E-02
96GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.97E-02
97GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.28E-02
98GO:0000049: tRNA binding2.30E-02
99GO:0005262: calcium channel activity2.52E-02
100GO:0004565: beta-galactosidase activity2.52E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity2.52E-02
102GO:0010329: auxin efflux transmembrane transporter activity2.52E-02
103GO:0015266: protein channel activity2.52E-02
104GO:0003993: acid phosphatase activity2.62E-02
105GO:0008083: growth factor activity2.74E-02
106GO:0008422: beta-glucosidase activity2.74E-02
107GO:0004535: poly(A)-specific ribonuclease activity2.74E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.74E-02
109GO:0005525: GTP binding2.88E-02
110GO:0003887: DNA-directed DNA polymerase activity3.21E-02
111GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.21E-02
112GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.21E-02
113GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.21E-02
114GO:0004185: serine-type carboxypeptidase activity3.23E-02
115GO:0051536: iron-sulfur cluster binding3.46E-02
116GO:0004407: histone deacetylase activity3.46E-02
117GO:0003714: transcription corepressor activity3.46E-02
118GO:0003924: GTPase activity3.67E-02
119GO:0015079: potassium ion transmembrane transporter activity3.71E-02
120GO:0008408: 3'-5' exonuclease activity3.97E-02
121GO:0003690: double-stranded DNA binding4.49E-02
122GO:0003727: single-stranded RNA binding4.78E-02
123GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.95E-02
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Gene type



Gene DE type