Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0090279: regulation of calcium ion import0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
11GO:0034337: RNA folding0.00E+00
12GO:0015995: chlorophyll biosynthetic process2.17E-10
13GO:0010207: photosystem II assembly4.68E-08
14GO:0010021: amylopectin biosynthetic process5.69E-07
15GO:0055114: oxidation-reduction process6.84E-06
16GO:0015979: photosynthesis7.28E-06
17GO:0048564: photosystem I assembly1.04E-05
18GO:0009735: response to cytokinin1.37E-05
19GO:0019252: starch biosynthetic process3.31E-05
20GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.96E-05
21GO:0010027: thylakoid membrane organization7.77E-05
22GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.60E-04
23GO:1901259: chloroplast rRNA processing2.18E-04
24GO:0009854: oxidative photosynthetic carbon pathway2.18E-04
25GO:0009443: pyridoxal 5'-phosphate salvage3.34E-04
26GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.34E-04
27GO:0043489: RNA stabilization3.34E-04
28GO:0043953: protein transport by the Tat complex3.34E-04
29GO:0015671: oxygen transport3.34E-04
30GO:1904966: positive regulation of vitamin E biosynthetic process3.34E-04
31GO:0000481: maturation of 5S rRNA3.34E-04
32GO:1904964: positive regulation of phytol biosynthetic process3.34E-04
33GO:0065002: intracellular protein transmembrane transport3.34E-04
34GO:0043686: co-translational protein modification3.34E-04
35GO:1902458: positive regulation of stomatal opening3.34E-04
36GO:0016559: peroxisome fission3.55E-04
37GO:0071482: cellular response to light stimulus4.36E-04
38GO:0006783: heme biosynthetic process5.24E-04
39GO:0006779: porphyrin-containing compound biosynthetic process6.19E-04
40GO:0006782: protoporphyrinogen IX biosynthetic process7.22E-04
41GO:0030388: fructose 1,6-bisphosphate metabolic process7.29E-04
42GO:0051262: protein tetramerization7.29E-04
43GO:0010275: NAD(P)H dehydrogenase complex assembly7.29E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process7.29E-04
45GO:0006435: threonyl-tRNA aminoacylation7.29E-04
46GO:0018026: peptidyl-lysine monomethylation7.29E-04
47GO:0000256: allantoin catabolic process7.29E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process7.29E-04
49GO:0009817: defense response to fungus, incompatible interaction1.06E-03
50GO:0006094: gluconeogenesis1.07E-03
51GO:0006000: fructose metabolic process1.18E-03
52GO:0010136: ureide catabolic process1.18E-03
53GO:0034051: negative regulation of plant-type hypersensitive response1.18E-03
54GO:0015940: pantothenate biosynthetic process1.18E-03
55GO:0044375: regulation of peroxisome size1.18E-03
56GO:0005977: glycogen metabolic process1.18E-03
57GO:0009853: photorespiration1.43E-03
58GO:0009152: purine ribonucleotide biosynthetic process1.70E-03
59GO:0010601: positive regulation of auxin biosynthetic process1.70E-03
60GO:0046653: tetrahydrofolate metabolic process1.70E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.70E-03
62GO:0033014: tetrapyrrole biosynthetic process1.70E-03
63GO:0006145: purine nucleobase catabolic process1.70E-03
64GO:0010731: protein glutathionylation1.70E-03
65GO:1901332: negative regulation of lateral root development1.70E-03
66GO:2001141: regulation of RNA biosynthetic process1.70E-03
67GO:0010371: regulation of gibberellin biosynthetic process1.70E-03
68GO:0006020: inositol metabolic process1.70E-03
69GO:0061077: chaperone-mediated protein folding2.02E-03
70GO:0019748: secondary metabolic process2.21E-03
71GO:0009765: photosynthesis, light harvesting2.28E-03
72GO:0006536: glutamate metabolic process2.28E-03
73GO:0006021: inositol biosynthetic process2.28E-03
74GO:0006412: translation2.63E-03
75GO:0016123: xanthophyll biosynthetic process2.91E-03
76GO:0000304: response to singlet oxygen2.91E-03
77GO:0080110: sporopollenin biosynthetic process2.91E-03
78GO:0016120: carotene biosynthetic process2.91E-03
79GO:0006564: L-serine biosynthetic process2.91E-03
80GO:0045038: protein import into chloroplast thylakoid membrane2.91E-03
81GO:0031365: N-terminal protein amino acid modification2.91E-03
82GO:0000470: maturation of LSU-rRNA3.60E-03
83GO:0006655: phosphatidylglycerol biosynthetic process3.60E-03
84GO:0046855: inositol phosphate dephosphorylation3.60E-03
85GO:0010304: PSII associated light-harvesting complex II catabolic process3.60E-03
86GO:0042549: photosystem II stabilization3.60E-03
87GO:0009658: chloroplast organization3.62E-03
88GO:0048437: floral organ development5.11E-03
89GO:0005975: carbohydrate metabolic process5.66E-03
90GO:0005978: glycogen biosynthetic process5.94E-03
91GO:0032508: DNA duplex unwinding5.94E-03
92GO:2000070: regulation of response to water deprivation5.94E-03
93GO:0006002: fructose 6-phosphate metabolic process6.81E-03
94GO:0015996: chlorophyll catabolic process6.81E-03
95GO:0007186: G-protein coupled receptor signaling pathway6.81E-03
96GO:0032544: plastid translation6.81E-03
97GO:0017004: cytochrome complex assembly6.81E-03
98GO:0010206: photosystem II repair7.73E-03
99GO:0019432: triglyceride biosynthetic process7.73E-03
100GO:0010205: photoinhibition8.68E-03
101GO:0031425: chloroplast RNA processing8.68E-03
102GO:0005982: starch metabolic process8.68E-03
103GO:0007568: aging8.91E-03
104GO:0006535: cysteine biosynthetic process from serine9.69E-03
105GO:0045087: innate immune response9.77E-03
106GO:0009089: lysine biosynthetic process via diaminopimelate1.07E-02
107GO:0009773: photosynthetic electron transport in photosystem I1.07E-02
108GO:0072593: reactive oxygen species metabolic process1.07E-02
109GO:0008285: negative regulation of cell proliferation1.07E-02
110GO:0006352: DNA-templated transcription, initiation1.07E-02
111GO:0006631: fatty acid metabolic process1.16E-02
112GO:0006790: sulfur compound metabolic process1.18E-02
113GO:0016024: CDP-diacylglycerol biosynthetic process1.18E-02
114GO:0045037: protein import into chloroplast stroma1.18E-02
115GO:0009767: photosynthetic electron transport chain1.29E-02
116GO:0005986: sucrose biosynthetic process1.29E-02
117GO:0006807: nitrogen compound metabolic process1.29E-02
118GO:0010020: chloroplast fission1.41E-02
119GO:0019253: reductive pentose-phosphate cycle1.41E-02
120GO:0009266: response to temperature stimulus1.41E-02
121GO:0006810: transport1.50E-02
122GO:0007031: peroxisome organization1.53E-02
123GO:0046854: phosphatidylinositol phosphorylation1.53E-02
124GO:0042254: ribosome biogenesis1.63E-02
125GO:0019762: glucosinolate catabolic process1.65E-02
126GO:0006636: unsaturated fatty acid biosynthetic process1.65E-02
127GO:0019344: cysteine biosynthetic process1.77E-02
128GO:0006289: nucleotide-excision repair1.77E-02
129GO:0008299: isoprenoid biosynthetic process1.90E-02
130GO:0007017: microtubule-based process1.90E-02
131GO:0010073: meristem maintenance1.90E-02
132GO:0031408: oxylipin biosynthetic process2.03E-02
133GO:0016114: terpenoid biosynthetic process2.03E-02
134GO:0048511: rhythmic process2.03E-02
135GO:0016226: iron-sulfur cluster assembly2.17E-02
136GO:0035428: hexose transmembrane transport2.17E-02
137GO:0080092: regulation of pollen tube growth2.17E-02
138GO:0009625: response to insect2.31E-02
139GO:0010227: floral organ abscission2.31E-02
140GO:0010584: pollen exine formation2.45E-02
141GO:0016117: carotenoid biosynthetic process2.60E-02
142GO:0042631: cellular response to water deprivation2.74E-02
143GO:0010182: sugar mediated signaling pathway2.89E-02
144GO:0046323: glucose import2.89E-02
145GO:0009791: post-embryonic development3.20E-02
146GO:0009556: microsporogenesis3.20E-02
147GO:0000302: response to reactive oxygen species3.36E-02
148GO:0042744: hydrogen peroxide catabolic process3.47E-02
149GO:0006397: mRNA processing3.57E-02
150GO:0030163: protein catabolic process3.69E-02
151GO:0006633: fatty acid biosynthetic process3.82E-02
152GO:0009567: double fertilization forming a zygote and endosperm3.85E-02
153GO:0006413: translational initiation3.91E-02
154GO:0009451: RNA modification4.29E-02
155GO:0016126: sterol biosynthetic process4.37E-02
156GO:0010228: vegetative to reproductive phase transition of meristem4.39E-02
157GO:0042128: nitrate assimilation4.72E-02
158GO:0006950: response to stress4.90E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0019144: ADP-sugar diphosphatase activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
13GO:0008465: glycerate dehydrogenase activity0.00E+00
14GO:0046408: chlorophyll synthetase activity0.00E+00
15GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
16GO:0070402: NADPH binding4.05E-08
17GO:0008266: poly(U) RNA binding4.68E-08
18GO:0019843: rRNA binding1.04E-07
19GO:0005528: FK506 binding1.24E-07
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.35E-07
21GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.06E-06
22GO:0016851: magnesium chelatase activity3.96E-05
23GO:0031072: heat shock protein binding6.97E-05
24GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.06E-05
25GO:0003959: NADPH dehydrogenase activity1.11E-04
26GO:0016491: oxidoreductase activity1.22E-04
27GO:0003746: translation elongation factor activity1.92E-04
28GO:0005227: calcium activated cation channel activity3.34E-04
29GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity3.34E-04
30GO:0016776: phosphotransferase activity, phosphate group as acceptor3.34E-04
31GO:0004856: xylulokinase activity3.34E-04
32GO:0080042: ADP-glucose pyrophosphohydrolase activity3.34E-04
33GO:0004325: ferrochelatase activity3.34E-04
34GO:0004853: uroporphyrinogen decarboxylase activity3.34E-04
35GO:0042586: peptide deformylase activity3.34E-04
36GO:0005080: protein kinase C binding3.34E-04
37GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.34E-04
38GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.34E-04
39GO:0005344: oxygen transporter activity3.34E-04
40GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.34E-04
41GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.34E-04
42GO:0048038: quinone binding4.78E-04
43GO:0004617: phosphoglycerate dehydrogenase activity7.29E-04
44GO:0052832: inositol monophosphate 3-phosphatase activity7.29E-04
45GO:0033201: alpha-1,4-glucan synthase activity7.29E-04
46GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.29E-04
47GO:0003844: 1,4-alpha-glucan branching enzyme activity7.29E-04
48GO:0016630: protochlorophyllide reductase activity7.29E-04
49GO:0008934: inositol monophosphate 1-phosphatase activity7.29E-04
50GO:0004829: threonine-tRNA ligase activity7.29E-04
51GO:0052833: inositol monophosphate 4-phosphatase activity7.29E-04
52GO:0019156: isoamylase activity7.29E-04
53GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.29E-04
54GO:0050017: L-3-cyanoalanine synthase activity7.29E-04
55GO:0042389: omega-3 fatty acid desaturase activity7.29E-04
56GO:0080041: ADP-ribose pyrophosphohydrolase activity7.29E-04
57GO:0009977: proton motive force dependent protein transmembrane transporter activity7.29E-04
58GO:0004324: ferredoxin-NADP+ reductase activity1.18E-03
59GO:0043169: cation binding1.18E-03
60GO:0004373: glycogen (starch) synthase activity1.18E-03
61GO:0005504: fatty acid binding1.18E-03
62GO:0004148: dihydrolipoyl dehydrogenase activity1.18E-03
63GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.18E-03
64GO:0004751: ribose-5-phosphate isomerase activity1.18E-03
65GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.18E-03
66GO:0008864: formyltetrahydrofolate deformylase activity1.18E-03
67GO:0003735: structural constituent of ribosome1.29E-03
68GO:0004792: thiosulfate sulfurtransferase activity1.70E-03
69GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.70E-03
70GO:0043023: ribosomal large subunit binding1.70E-03
71GO:0004351: glutamate decarboxylase activity1.70E-03
72GO:0016987: sigma factor activity2.28E-03
73GO:0070628: proteasome binding2.28E-03
74GO:0045430: chalcone isomerase activity2.28E-03
75GO:0009011: starch synthase activity2.28E-03
76GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.28E-03
77GO:0043495: protein anchor2.28E-03
78GO:0016279: protein-lysine N-methyltransferase activity2.28E-03
79GO:0001053: plastid sigma factor activity2.28E-03
80GO:0008374: O-acyltransferase activity2.91E-03
81GO:0016773: phosphotransferase activity, alcohol group as acceptor2.91E-03
82GO:0004332: fructose-bisphosphate aldolase activity3.60E-03
83GO:0031593: polyubiquitin binding3.60E-03
84GO:0004629: phospholipase C activity3.60E-03
85GO:0004130: cytochrome-c peroxidase activity3.60E-03
86GO:0004556: alpha-amylase activity3.60E-03
87GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.60E-03
88GO:0042578: phosphoric ester hydrolase activity3.60E-03
89GO:0003723: RNA binding3.72E-03
90GO:0004124: cysteine synthase activity4.33E-03
91GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.33E-03
92GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.33E-03
93GO:0005261: cation channel activity4.33E-03
94GO:0004435: phosphatidylinositol phospholipase C activity4.33E-03
95GO:0016787: hydrolase activity4.38E-03
96GO:0051082: unfolded protein binding4.53E-03
97GO:0019899: enzyme binding5.11E-03
98GO:0004033: aldo-keto reductase (NADP) activity5.94E-03
99GO:0008135: translation factor activity, RNA binding6.81E-03
100GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.81E-03
101GO:0030170: pyridoxal phosphate binding6.89E-03
102GO:0004222: metalloendopeptidase activity8.49E-03
103GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.68E-03
104GO:0005089: Rho guanyl-nucleotide exchange factor activity1.07E-02
105GO:0042802: identical protein binding1.24E-02
106GO:0004185: serine-type carboxypeptidase activity1.26E-02
107GO:0004565: beta-galactosidase activity1.29E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.41E-02
109GO:0005525: GTP binding1.50E-02
110GO:0051287: NAD binding1.53E-02
111GO:0003729: mRNA binding1.54E-02
112GO:0004601: peroxidase activity1.59E-02
113GO:0016887: ATPase activity1.76E-02
114GO:0043130: ubiquitin binding1.77E-02
115GO:0051536: iron-sulfur cluster binding1.77E-02
116GO:0004176: ATP-dependent peptidase activity2.03E-02
117GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.09E-02
118GO:0022891: substrate-specific transmembrane transporter activity2.31E-02
119GO:0003756: protein disulfide isomerase activity2.45E-02
120GO:0008080: N-acetyltransferase activity2.89E-02
121GO:0016853: isomerase activity3.05E-02
122GO:0005355: glucose transmembrane transporter activity3.05E-02
123GO:0050662: coenzyme binding3.05E-02
124GO:0046872: metal ion binding3.25E-02
125GO:0003924: GTPase activity3.39E-02
126GO:0015144: carbohydrate transmembrane transporter activity3.64E-02
127GO:0003684: damaged DNA binding3.85E-02
128GO:0008483: transaminase activity4.02E-02
129GO:0008237: metallopeptidase activity4.02E-02
130GO:0005200: structural constituent of cytoskeleton4.02E-02
131GO:0005351: sugar:proton symporter activity4.10E-02
132GO:0016597: amino acid binding4.19E-02
133GO:0016168: chlorophyll binding4.54E-02
134GO:0003743: translation initiation factor activity4.89E-02
135GO:0004721: phosphoprotein phosphatase activity4.90E-02
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Gene type



Gene DE type