co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0034337: RNA folding	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0015995: chlorophyll biosynthetic process	1.36E-12
8	GO:0015979: photosynthesis	9.08E-10
9	GO:0009735: response to cytokinin	4.43E-08
10	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.53E-06
11	GO:0009658: chloroplast organization	8.78E-06
12	GO:0032544: plastid translation	9.37E-06
13	GO:0006000: fructose metabolic process	1.27E-05
14	GO:0055114: oxidation-reduction process	2.18E-05
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.85E-05
16	GO:0009773: photosynthetic electron transport in photosystem I	2.95E-05
17	GO:0006412: translation	4.15E-05
18	GO:0006094: gluconeogenesis	4.57E-05
19	GO:0010021: amylopectin biosynthetic process	5.13E-05
20	GO:0019253: reductive pentose-phosphate cycle	5.55E-05
21	GO:0009704: de-etiolation	2.69E-04
22	GO:0043953: protein transport by the Tat complex	2.77E-04
23	GO:0071277: cellular response to calcium ion	2.77E-04
24	GO:0043489: RNA stabilization	2.77E-04
25	GO:1904966: positive regulation of vitamin E biosynthetic process	2.77E-04
26	GO:0000481: maturation of 5S rRNA	2.77E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	2.77E-04
28	GO:0065002: intracellular protein transmembrane transport	2.77E-04
29	GO:0043686: co-translational protein modification	2.77E-04
30	GO:0019252: starch biosynthetic process	3.05E-04
31	GO:0006002: fructose 6-phosphate metabolic process	3.32E-04
32	GO:0006783: heme biosynthetic process	3.99E-04
33	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.09E-04
34	GO:0006729: tetrahydrobiopterin biosynthetic process	6.09E-04
35	GO:0018119: peptidyl-cysteine S-nitrosylation	6.38E-04
36	GO:0005986: sucrose biosynthetic process	8.26E-04
37	GO:0010207: photosystem II assembly	9.28E-04
38	GO:0006518: peptide metabolic process	9.88E-04
39	GO:0044375: regulation of peroxisome size	9.88E-04
40	GO:0034599: cellular response to oxidative stress	1.07E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.41E-03
42	GO:0033014: tetrapyrrole biosynthetic process	1.41E-03
43	GO:1901332: negative regulation of lateral root development	1.41E-03
44	GO:0006020: inositol metabolic process	1.41E-03
45	GO:0009152: purine ribonucleotide biosynthetic process	1.41E-03
46	GO:0046653: tetrahydrofolate metabolic process	1.41E-03
47	GO:0045727: positive regulation of translation	1.89E-03
48	GO:0010600: regulation of auxin biosynthetic process	1.89E-03
49	GO:0006546: glycine catabolic process	1.89E-03
50	GO:0006021: inositol biosynthetic process	1.89E-03
51	GO:0006109: regulation of carbohydrate metabolic process	1.89E-03
52	GO:0042631: cellular response to water deprivation	2.33E-03
53	GO:0000304: response to singlet oxygen	2.41E-03
54	GO:0043097: pyrimidine nucleoside salvage	2.41E-03
55	GO:0006564: L-serine biosynthetic process	2.41E-03
56	GO:0031365: N-terminal protein amino acid modification	2.41E-03
57	GO:0009107: lipoate biosynthetic process	2.41E-03
58	GO:0042254: ribosome biogenesis	2.44E-03
59	GO:0006662: glycerol ether metabolic process	2.51E-03
60	GO:0006810: transport	2.87E-03
61	GO:0006206: pyrimidine nucleobase metabolic process	2.98E-03
62	GO:0046855: inositol phosphate dephosphorylation	2.98E-03
63	GO:0042549: photosystem II stabilization	2.98E-03
64	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.58E-03
65	GO:1901259: chloroplast rRNA processing	3.58E-03
66	GO:0000054: ribosomal subunit export from nucleus	3.58E-03
67	GO:0010189: vitamin E biosynthetic process	3.58E-03
68	GO:0009854: oxidative photosynthetic carbon pathway	3.58E-03
69	GO:1900057: positive regulation of leaf senescence	4.23E-03
70	GO:0050790: regulation of catalytic activity	4.23E-03
71	GO:0010161: red light signaling pathway	4.23E-03
72	GO:0009772: photosynthetic electron transport in photosystem II	4.23E-03
73	GO:0010027: thylakoid membrane organization	4.47E-03
74	GO:0010928: regulation of auxin mediated signaling pathway	4.90E-03
75	GO:0005978: glycogen biosynthetic process	4.90E-03
76	GO:0009642: response to light intensity	4.90E-03
77	GO:0032508: DNA duplex unwinding	4.90E-03
78	GO:0016559: peroxisome fission	4.90E-03
79	GO:0048564: photosystem I assembly	4.90E-03
80	GO:0009657: plastid organization	5.62E-03
81	GO:0006526: arginine biosynthetic process	5.62E-03
82	GO:0071482: cellular response to light stimulus	5.62E-03
83	GO:0006633: fatty acid biosynthetic process	5.67E-03
84	GO:0009817: defense response to fungus, incompatible interaction	5.83E-03
85	GO:0090333: regulation of stomatal closure	6.37E-03
86	GO:0006754: ATP biosynthetic process	6.37E-03
87	GO:0005982: starch metabolic process	7.15E-03
88	GO:0006779: porphyrin-containing compound biosynthetic process	7.15E-03
89	GO:0009853: photorespiration	7.40E-03
90	GO:0006782: protoporphyrinogen IX biosynthetic process	7.97E-03
91	GO:0006535: cysteine biosynthetic process from serine	7.97E-03
92	GO:0043069: negative regulation of programmed cell death	7.97E-03
93	GO:0019684: photosynthesis, light reaction	8.82E-03
94	GO:0006415: translational termination	8.82E-03
95	GO:0043085: positive regulation of catalytic activity	8.82E-03
96	GO:0000272: polysaccharide catabolic process	8.82E-03
97	GO:0006790: sulfur compound metabolic process	9.70E-03
98	GO:0018107: peptidyl-threonine phosphorylation	1.06E-02
99	GO:0009767: photosynthetic electron transport chain	1.06E-02
100	GO:0009266: response to temperature stimulus	1.16E-02
101	GO:0005985: sucrose metabolic process	1.25E-02
102	GO:0046854: phosphatidylinositol phosphorylation	1.25E-02
103	GO:0007031: peroxisome organization	1.25E-02
104	GO:0006364: rRNA processing	1.29E-02
105	GO:0006636: unsaturated fatty acid biosynthetic process	1.35E-02
106	GO:0019762: glucosinolate catabolic process	1.35E-02
107	GO:0000027: ribosomal large subunit assembly	1.46E-02
108	GO:0019344: cysteine biosynthetic process	1.46E-02
109	GO:0031408: oxylipin biosynthetic process	1.67E-02
110	GO:0061077: chaperone-mediated protein folding	1.67E-02
111	GO:0010017: red or far-red light signaling pathway	1.78E-02
112	GO:0016226: iron-sulfur cluster assembly	1.78E-02
113	GO:0019748: secondary metabolic process	1.78E-02
114	GO:0006396: RNA processing	1.90E-02
115	GO:0009561: megagametogenesis	2.01E-02
116	GO:0009306: protein secretion	2.01E-02
117	GO:0009409: response to cold	2.22E-02
118	GO:0006606: protein import into nucleus	2.25E-02
119	GO:0032259: methylation	2.27E-02
120	GO:0006520: cellular amino acid metabolic process	2.37E-02
121	GO:0009058: biosynthetic process	2.43E-02
122	GO:0015986: ATP synthesis coupled proton transport	2.50E-02
123	GO:0000302: response to reactive oxygen species	2.76E-02
124	GO:0006413: translational initiation	2.97E-02
125	GO:0009567: double fertilization forming a zygote and endosperm	3.16E-02
126	GO:0042128: nitrate assimilation	3.87E-02
127	GO:0042742: defense response to bacterium	4.02E-02
128	GO:0010411: xyloglucan metabolic process	4.02E-02
129	GO:0006950: response to stress	4.02E-02
130	GO:0018298: protein-chromophore linkage	4.33E-02
131	GO:0010311: lateral root formation	4.48E-02
132	GO:0009407: toxin catabolic process	4.64E-02
133	GO:0009631: cold acclimation	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0090711: FMN hydrolase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
5	GO:0008974: phosphoribulokinase activity	0.00E+00
6	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
7	GO:0008465: glycerate dehydrogenase activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
10	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
11	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
12	GO:0019843: rRNA binding	5.92E-11
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.53E-06
14	GO:0003735: structural constituent of ribosome	9.05E-06
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.19E-05
16	GO:0016851: magnesium chelatase activity	2.85E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.13E-05
18	GO:0008266: poly(U) RNA binding	5.55E-05
19	GO:0005528: FK506 binding	9.27E-05
20	GO:0080132: fatty acid alpha-hydroxylase activity	2.77E-04
21	GO:0004325: ferrochelatase activity	2.77E-04
22	GO:0004853: uroporphyrinogen decarboxylase activity	2.77E-04
23	GO:0042586: peptide deformylase activity	2.77E-04
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.77E-04
25	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.77E-04
26	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.77E-04
27	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	6.09E-04
28	GO:0043024: ribosomal small subunit binding	6.09E-04
29	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.09E-04
30	GO:0008934: inositol monophosphate 1-phosphatase activity	6.09E-04
31	GO:0052833: inositol monophosphate 4-phosphatase activity	6.09E-04
32	GO:0018708: thiol S-methyltransferase activity	6.09E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.09E-04
34	GO:0016630: protochlorophyllide reductase activity	6.09E-04
35	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	6.09E-04
36	GO:0050017: L-3-cyanoalanine synthase activity	6.09E-04
37	GO:0042389: omega-3 fatty acid desaturase activity	6.09E-04
38	GO:0010297: heteropolysaccharide binding	6.09E-04
39	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.09E-04
40	GO:0004617: phosphoglycerate dehydrogenase activity	6.09E-04
41	GO:0004047: aminomethyltransferase activity	6.09E-04
42	GO:0052832: inositol monophosphate 3-phosphatase activity	6.09E-04
43	GO:0033201: alpha-1,4-glucan synthase activity	6.09E-04
44	GO:0016491: oxidoreductase activity	7.04E-04
45	GO:0031072: heat shock protein binding	8.26E-04
46	GO:0043169: cation binding	9.88E-04
47	GO:0004373: glycogen (starch) synthase activity	9.88E-04
48	GO:0016992: lipoate synthase activity	9.88E-04
49	GO:0004751: ribose-5-phosphate isomerase activity	9.88E-04
50	GO:0030267: glyoxylate reductase (NADP) activity	9.88E-04
51	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.88E-04
52	GO:0008864: formyltetrahydrofolate deformylase activity	9.88E-04
53	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.88E-04
54	GO:0010277: chlorophyllide a oxygenase [overall] activity	9.88E-04
55	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.41E-03
56	GO:0043023: ribosomal large subunit binding	1.41E-03
57	GO:0051537: 2 iron, 2 sulfur cluster binding	1.54E-03
58	GO:0051287: NAD binding	1.78E-03
59	GO:0043495: protein anchor	1.89E-03
60	GO:0009011: starch synthase activity	1.89E-03
61	GO:0047134: protein-disulfide reductase activity	2.16E-03
62	GO:0003959: NADPH dehydrogenase activity	2.41E-03
63	GO:0004791: thioredoxin-disulfide reductase activity	2.70E-03
64	GO:0004130: cytochrome-c peroxidase activity	2.98E-03
65	GO:0042578: phosphoric ester hydrolase activity	2.98E-03
66	GO:0004332: fructose-bisphosphate aldolase activity	2.98E-03
67	GO:0048038: quinone binding	3.09E-03
68	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.52E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.58E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.58E-03
71	GO:0004849: uridine kinase activity	3.58E-03
72	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.58E-03
73	GO:0004124: cysteine synthase activity	3.58E-03
74	GO:0019899: enzyme binding	4.23E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-03
76	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.62E-03
77	GO:0071949: FAD binding	6.37E-03
78	GO:0004222: metalloendopeptidase activity	6.43E-03
79	GO:0016787: hydrolase activity	6.50E-03
80	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.15E-03
81	GO:0003746: translation elongation factor activity	7.40E-03
82	GO:0030234: enzyme regulator activity	7.97E-03
83	GO:0008047: enzyme activator activity	7.97E-03
84	GO:0042802: identical protein binding	8.67E-03
85	GO:0003729: mRNA binding	8.97E-03
86	GO:0043621: protein self-association	1.03E-02
87	GO:0004565: beta-galactosidase activity	1.06E-02
88	GO:0008168: methyltransferase activity	1.06E-02
89	GO:0019888: protein phosphatase regulator activity	1.06E-02
90	GO:0016887: ATPase activity	1.16E-02
91	GO:0051536: iron-sulfur cluster binding	1.46E-02
92	GO:0004857: enzyme inhibitor activity	1.46E-02
93	GO:0051082: unfolded protein binding	1.84E-02
94	GO:0022891: substrate-specific transmembrane transporter activity	1.89E-02
95	GO:0015035: protein disulfide oxidoreductase activity	1.90E-02
96	GO:0003723: RNA binding	2.00E-02
97	GO:0003727: single-stranded RNA binding	2.01E-02
98	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.37E-02
99	GO:0008080: N-acetyltransferase activity	2.37E-02
100	GO:0050662: coenzyme binding	2.50E-02
101	GO:0009055: electron carrier activity	2.62E-02
102	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.76E-02
103	GO:0008565: protein transporter activity	2.76E-02
104	GO:0008483: transaminase activity	3.30E-02
105	GO:0016597: amino acid binding	3.44E-02
106	GO:0016168: chlorophyll binding	3.73E-02
107	GO:0005506: iron ion binding	3.93E-02
108	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.02E-02
109	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.17E-02
110	GO:0004601: peroxidase activity	4.90E-02