GO Enrichment Analysis of Co-expressed Genes with
AT3G54830
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
2 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
3 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
4 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
5 | GO:0045184: establishment of protein localization | 0.00E+00 |
6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
7 | GO:0042793: transcription from plastid promoter | 4.86E-11 |
8 | GO:0009658: chloroplast organization | 8.31E-09 |
9 | GO:0009451: RNA modification | 3.45E-07 |
10 | GO:0009790: embryo development | 3.04E-05 |
11 | GO:0009793: embryo development ending in seed dormancy | 5.08E-05 |
12 | GO:0042026: protein refolding | 2.07E-04 |
13 | GO:0048437: floral organ development | 2.70E-04 |
14 | GO:0034757: negative regulation of iron ion transport | 3.24E-04 |
15 | GO:0006419: alanyl-tRNA aminoacylation | 3.24E-04 |
16 | GO:0006427: histidyl-tRNA aminoacylation | 3.24E-04 |
17 | GO:0042659: regulation of cell fate specification | 3.24E-04 |
18 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 3.24E-04 |
19 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 3.24E-04 |
20 | GO:0070509: calcium ion import | 3.24E-04 |
21 | GO:0005980: glycogen catabolic process | 3.24E-04 |
22 | GO:0090558: plant epidermis development | 3.24E-04 |
23 | GO:0010063: positive regulation of trichoblast fate specification | 3.24E-04 |
24 | GO:0010480: microsporocyte differentiation | 3.24E-04 |
25 | GO:0042371: vitamin K biosynthetic process | 3.24E-04 |
26 | GO:0035987: endodermal cell differentiation | 3.24E-04 |
27 | GO:0006436: tryptophanyl-tRNA aminoacylation | 3.24E-04 |
28 | GO:0009657: plastid organization | 4.17E-04 |
29 | GO:0010583: response to cyclopentenone | 4.91E-04 |
30 | GO:0000373: Group II intron splicing | 5.01E-04 |
31 | GO:0009828: plant-type cell wall loosening | 5.77E-04 |
32 | GO:0045036: protein targeting to chloroplast | 6.91E-04 |
33 | GO:0006420: arginyl-tRNA aminoacylation | 7.07E-04 |
34 | GO:0060359: response to ammonium ion | 7.07E-04 |
35 | GO:0048255: mRNA stabilization | 7.07E-04 |
36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.07E-04 |
37 | GO:0010569: regulation of double-strand break repair via homologous recombination | 7.07E-04 |
38 | GO:0010271: regulation of chlorophyll catabolic process | 7.07E-04 |
39 | GO:0018026: peptidyl-lysine monomethylation | 7.07E-04 |
40 | GO:0009662: etioplast organization | 7.07E-04 |
41 | GO:0042325: regulation of phosphorylation | 7.07E-04 |
42 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 7.07E-04 |
43 | GO:1904143: positive regulation of carotenoid biosynthetic process | 7.07E-04 |
44 | GO:0080009: mRNA methylation | 7.07E-04 |
45 | GO:0010027: thylakoid membrane organization | 7.22E-04 |
46 | GO:0045037: protein import into chloroplast stroma | 9.08E-04 |
47 | GO:0000160: phosphorelay signal transduction system | 1.07E-03 |
48 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.14E-03 |
49 | GO:0090708: specification of plant organ axis polarity | 1.15E-03 |
50 | GO:0080117: secondary growth | 1.15E-03 |
51 | GO:0042780: tRNA 3'-end processing | 1.15E-03 |
52 | GO:0001578: microtubule bundle formation | 1.15E-03 |
53 | GO:0043157: response to cation stress | 1.15E-03 |
54 | GO:0005977: glycogen metabolic process | 1.15E-03 |
55 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.15E-03 |
56 | GO:0006508: proteolysis | 1.31E-03 |
57 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.65E-03 |
58 | GO:0010239: chloroplast mRNA processing | 1.65E-03 |
59 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.65E-03 |
60 | GO:0019048: modulation by virus of host morphology or physiology | 1.65E-03 |
61 | GO:0046739: transport of virus in multicellular host | 1.65E-03 |
62 | GO:0031048: chromatin silencing by small RNA | 1.65E-03 |
63 | GO:0051289: protein homotetramerization | 1.65E-03 |
64 | GO:2001141: regulation of RNA biosynthetic process | 1.65E-03 |
65 | GO:0010071: root meristem specification | 1.65E-03 |
66 | GO:0006418: tRNA aminoacylation for protein translation | 1.76E-03 |
67 | GO:0006306: DNA methylation | 1.93E-03 |
68 | GO:0007005: mitochondrion organization | 2.11E-03 |
69 | GO:0051322: anaphase | 2.21E-03 |
70 | GO:0030104: water homeostasis | 2.21E-03 |
71 | GO:0006221: pyrimidine nucleotide biosynthetic process | 2.21E-03 |
72 | GO:0046656: folic acid biosynthetic process | 2.21E-03 |
73 | GO:0006021: inositol biosynthetic process | 2.21E-03 |
74 | GO:0051567: histone H3-K9 methylation | 2.21E-03 |
75 | GO:0044205: 'de novo' UMP biosynthetic process | 2.21E-03 |
76 | GO:0010021: amylopectin biosynthetic process | 2.21E-03 |
77 | GO:0006479: protein methylation | 2.21E-03 |
78 | GO:0009664: plant-type cell wall organization | 2.49E-03 |
79 | GO:0009736: cytokinin-activated signaling pathway | 2.73E-03 |
80 | GO:0010236: plastoquinone biosynthetic process | 2.82E-03 |
81 | GO:0048868: pollen tube development | 3.16E-03 |
82 | GO:0006342: chromatin silencing | 3.16E-03 |
83 | GO:0009959: negative gravitropism | 3.49E-03 |
84 | GO:0006655: phosphatidylglycerol biosynthetic process | 3.49E-03 |
85 | GO:0016554: cytidine to uridine editing | 3.49E-03 |
86 | GO:0048831: regulation of shoot system development | 3.49E-03 |
87 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 3.49E-03 |
88 | GO:0009228: thiamine biosynthetic process | 3.49E-03 |
89 | GO:0016458: gene silencing | 3.49E-03 |
90 | GO:2000067: regulation of root morphogenesis | 4.20E-03 |
91 | GO:0009955: adaxial/abaxial pattern specification | 4.20E-03 |
92 | GO:0042372: phylloquinone biosynthetic process | 4.20E-03 |
93 | GO:0006458: 'de novo' protein folding | 4.20E-03 |
94 | GO:0009942: longitudinal axis specification | 4.20E-03 |
95 | GO:0048509: regulation of meristem development | 4.20E-03 |
96 | GO:1901259: chloroplast rRNA processing | 4.20E-03 |
97 | GO:0046654: tetrahydrofolate biosynthetic process | 4.20E-03 |
98 | GO:0030488: tRNA methylation | 4.20E-03 |
99 | GO:0048528: post-embryonic root development | 4.95E-03 |
100 | GO:0009772: photosynthetic electron transport in photosystem II | 4.95E-03 |
101 | GO:0010444: guard mother cell differentiation | 4.95E-03 |
102 | GO:0009396: folic acid-containing compound biosynthetic process | 4.95E-03 |
103 | GO:0006400: tRNA modification | 4.95E-03 |
104 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 4.95E-03 |
105 | GO:0006955: immune response | 4.95E-03 |
106 | GO:0048564: photosystem I assembly | 5.76E-03 |
107 | GO:0006353: DNA-templated transcription, termination | 5.76E-03 |
108 | GO:0055075: potassium ion homeostasis | 5.76E-03 |
109 | GO:0000105: histidine biosynthetic process | 5.76E-03 |
110 | GO:0009416: response to light stimulus | 5.83E-03 |
111 | GO:0071482: cellular response to light stimulus | 6.60E-03 |
112 | GO:0010497: plasmodesmata-mediated intercellular transport | 6.60E-03 |
113 | GO:0007389: pattern specification process | 6.60E-03 |
114 | GO:0010411: xyloglucan metabolic process | 6.63E-03 |
115 | GO:0048481: plant ovule development | 7.35E-03 |
116 | GO:0006098: pentose-phosphate shunt | 7.48E-03 |
117 | GO:0000902: cell morphogenesis | 7.48E-03 |
118 | GO:0009098: leucine biosynthetic process | 8.41E-03 |
119 | GO:2000280: regulation of root development | 8.41E-03 |
120 | GO:1900865: chloroplast RNA modification | 8.41E-03 |
121 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 8.41E-03 |
122 | GO:0031425: chloroplast RNA processing | 8.41E-03 |
123 | GO:0006535: cysteine biosynthetic process from serine | 9.37E-03 |
124 | GO:0030422: production of siRNA involved in RNA interference | 9.37E-03 |
125 | GO:0006949: syncytium formation | 9.37E-03 |
126 | GO:0006259: DNA metabolic process | 9.37E-03 |
127 | GO:0006265: DNA topological change | 1.04E-02 |
128 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.04E-02 |
129 | GO:0006352: DNA-templated transcription, initiation | 1.04E-02 |
130 | GO:0016485: protein processing | 1.04E-02 |
131 | GO:0048229: gametophyte development | 1.04E-02 |
132 | GO:0006790: sulfur compound metabolic process | 1.14E-02 |
133 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.14E-02 |
134 | GO:0010114: response to red light | 1.21E-02 |
135 | GO:0009691: cytokinin biosynthetic process | 1.25E-02 |
136 | GO:0050826: response to freezing | 1.25E-02 |
137 | GO:0010075: regulation of meristem growth | 1.25E-02 |
138 | GO:0006094: gluconeogenesis | 1.25E-02 |
139 | GO:0042546: cell wall biogenesis | 1.26E-02 |
140 | GO:0010207: photosystem II assembly | 1.36E-02 |
141 | GO:0010020: chloroplast fission | 1.36E-02 |
142 | GO:0009934: regulation of meristem structural organization | 1.36E-02 |
143 | GO:0009826: unidimensional cell growth | 1.43E-02 |
144 | GO:0070588: calcium ion transmembrane transport | 1.48E-02 |
145 | GO:0046854: phosphatidylinositol phosphorylation | 1.48E-02 |
146 | GO:0006833: water transport | 1.60E-02 |
147 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.69E-02 |
148 | GO:0019344: cysteine biosynthetic process | 1.72E-02 |
149 | GO:0009116: nucleoside metabolic process | 1.72E-02 |
150 | GO:0051302: regulation of cell division | 1.84E-02 |
151 | GO:0019953: sexual reproduction | 1.84E-02 |
152 | GO:0006096: glycolytic process | 1.93E-02 |
153 | GO:0061077: chaperone-mediated protein folding | 1.97E-02 |
154 | GO:0031408: oxylipin biosynthetic process | 1.97E-02 |
155 | GO:0016998: cell wall macromolecule catabolic process | 1.97E-02 |
156 | GO:0015992: proton transport | 1.97E-02 |
157 | GO:0048316: seed development | 1.99E-02 |
158 | GO:0048367: shoot system development | 1.99E-02 |
159 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.23E-02 |
160 | GO:0010082: regulation of root meristem growth | 2.23E-02 |
161 | GO:0071215: cellular response to abscisic acid stimulus | 2.23E-02 |
162 | GO:0042127: regulation of cell proliferation | 2.37E-02 |
163 | GO:0009306: protein secretion | 2.37E-02 |
164 | GO:0009742: brassinosteroid mediated signaling pathway | 2.46E-02 |
165 | GO:0070417: cellular response to cold | 2.51E-02 |
166 | GO:0048653: anther development | 2.65E-02 |
167 | GO:0000226: microtubule cytoskeleton organization | 2.65E-02 |
168 | GO:0008033: tRNA processing | 2.65E-02 |
169 | GO:0010087: phloem or xylem histogenesis | 2.65E-02 |
170 | GO:0006662: glycerol ether metabolic process | 2.80E-02 |
171 | GO:0010305: leaf vascular tissue pattern formation | 2.80E-02 |
172 | GO:0009741: response to brassinosteroid | 2.80E-02 |
173 | GO:0009646: response to absence of light | 2.95E-02 |
174 | GO:0048544: recognition of pollen | 2.95E-02 |
175 | GO:0007059: chromosome segregation | 2.95E-02 |
176 | GO:0019252: starch biosynthetic process | 3.10E-02 |
177 | GO:0008654: phospholipid biosynthetic process | 3.10E-02 |
178 | GO:0009851: auxin biosynthetic process | 3.10E-02 |
179 | GO:0000302: response to reactive oxygen species | 3.25E-02 |
180 | GO:0009409: response to cold | 3.28E-02 |
181 | GO:0031047: gene silencing by RNA | 3.41E-02 |
182 | GO:0032502: developmental process | 3.41E-02 |
183 | GO:0009630: gravitropism | 3.41E-02 |
184 | GO:0010252: auxin homeostasis | 3.73E-02 |
185 | GO:0071805: potassium ion transmembrane transport | 3.89E-02 |
186 | GO:0051607: defense response to virus | 4.06E-02 |
187 | GO:0000910: cytokinesis | 4.06E-02 |
188 | GO:0001666: response to hypoxia | 4.23E-02 |
189 | GO:0010029: regulation of seed germination | 4.40E-02 |
190 | GO:0009816: defense response to bacterium, incompatible interaction | 4.40E-02 |
191 | GO:0006974: cellular response to DNA damage stimulus | 4.57E-02 |
192 | GO:0007166: cell surface receptor signaling pathway | 4.57E-02 |
193 | GO:0009627: systemic acquired resistance | 4.57E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
2 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
4 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
5 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
6 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
7 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
8 | GO:0003723: RNA binding | 1.36E-06 |
9 | GO:0004519: endonuclease activity | 2.37E-06 |
10 | GO:0008237: metallopeptidase activity | 2.83E-06 |
11 | GO:0004176: ATP-dependent peptidase activity | 7.83E-06 |
12 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.05E-04 |
13 | GO:0004222: metalloendopeptidase activity | 1.39E-04 |
14 | GO:0005227: calcium activated cation channel activity | 3.24E-04 |
15 | GO:0008184: glycogen phosphorylase activity | 3.24E-04 |
16 | GO:0042834: peptidoglycan binding | 3.24E-04 |
17 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 3.24E-04 |
18 | GO:0004645: phosphorylase activity | 3.24E-04 |
19 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 3.24E-04 |
20 | GO:0016274: protein-arginine N-methyltransferase activity | 3.24E-04 |
21 | GO:0004156: dihydropteroate synthase activity | 3.24E-04 |
22 | GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity | 3.24E-04 |
23 | GO:0004821: histidine-tRNA ligase activity | 3.24E-04 |
24 | GO:0004813: alanine-tRNA ligase activity | 3.24E-04 |
25 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.24E-04 |
26 | GO:0052381: tRNA dimethylallyltransferase activity | 3.24E-04 |
27 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.24E-04 |
28 | GO:0004830: tryptophan-tRNA ligase activity | 3.24E-04 |
29 | GO:0010285: L,L-diaminopimelate aminotransferase activity | 3.24E-04 |
30 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 3.24E-04 |
31 | GO:0052832: inositol monophosphate 3-phosphatase activity | 7.07E-04 |
32 | GO:0008934: inositol monophosphate 1-phosphatase activity | 7.07E-04 |
33 | GO:0019156: isoamylase activity | 7.07E-04 |
34 | GO:0052833: inositol monophosphate 4-phosphatase activity | 7.07E-04 |
35 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 7.07E-04 |
36 | GO:0003988: acetyl-CoA C-acyltransferase activity | 7.07E-04 |
37 | GO:0009884: cytokinin receptor activity | 7.07E-04 |
38 | GO:0003852: 2-isopropylmalate synthase activity | 7.07E-04 |
39 | GO:0004814: arginine-tRNA ligase activity | 7.07E-04 |
40 | GO:0044183: protein binding involved in protein folding | 7.96E-04 |
41 | GO:0046524: sucrose-phosphate synthase activity | 1.15E-03 |
42 | GO:0070330: aromatase activity | 1.15E-03 |
43 | GO:0017150: tRNA dihydrouridine synthase activity | 1.15E-03 |
44 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.15E-03 |
45 | GO:0005034: osmosensor activity | 1.15E-03 |
46 | GO:0005525: GTP binding | 1.31E-03 |
47 | GO:0005524: ATP binding | 1.41E-03 |
48 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.65E-03 |
49 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 1.65E-03 |
50 | GO:0009041: uridylate kinase activity | 1.65E-03 |
51 | GO:0035197: siRNA binding | 1.65E-03 |
52 | GO:0001872: (1->3)-beta-D-glucan binding | 1.65E-03 |
53 | GO:0016987: sigma factor activity | 2.21E-03 |
54 | GO:0004930: G-protein coupled receptor activity | 2.21E-03 |
55 | GO:0004659: prenyltransferase activity | 2.21E-03 |
56 | GO:0016279: protein-lysine N-methyltransferase activity | 2.21E-03 |
57 | GO:0001053: plastid sigma factor activity | 2.21E-03 |
58 | GO:0004812: aminoacyl-tRNA ligase activity | 2.71E-03 |
59 | GO:0004888: transmembrane signaling receptor activity | 2.82E-03 |
60 | GO:0018685: alkane 1-monooxygenase activity | 2.82E-03 |
61 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 2.82E-03 |
62 | GO:0004332: fructose-bisphosphate aldolase activity | 3.49E-03 |
63 | GO:0004556: alpha-amylase activity | 3.49E-03 |
64 | GO:0004605: phosphatidate cytidylyltransferase activity | 3.49E-03 |
65 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 3.89E-03 |
66 | GO:0008195: phosphatidate phosphatase activity | 4.20E-03 |
67 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.20E-03 |
68 | GO:0019900: kinase binding | 4.20E-03 |
69 | GO:0004124: cysteine synthase activity | 4.20E-03 |
70 | GO:0000156: phosphorelay response regulator activity | 4.44E-03 |
71 | GO:0004427: inorganic diphosphatase activity | 4.95E-03 |
72 | GO:0016597: amino acid binding | 5.32E-03 |
73 | GO:0008173: RNA methyltransferase activity | 6.60E-03 |
74 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 6.60E-03 |
75 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 6.63E-03 |
76 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 7.35E-03 |
77 | GO:0009672: auxin:proton symporter activity | 8.41E-03 |
78 | GO:0003924: GTPase activity | 8.48E-03 |
79 | GO:0004673: protein histidine kinase activity | 9.37E-03 |
80 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 9.46E-03 |
81 | GO:0004521: endoribonuclease activity | 1.14E-02 |
82 | GO:0000049: tRNA binding | 1.14E-02 |
83 | GO:0042802: identical protein binding | 1.17E-02 |
84 | GO:0004185: serine-type carboxypeptidase activity | 1.21E-02 |
85 | GO:0019888: protein phosphatase regulator activity | 1.25E-02 |
86 | GO:0004565: beta-galactosidase activity | 1.25E-02 |
87 | GO:0010329: auxin efflux transmembrane transporter activity | 1.25E-02 |
88 | GO:0000155: phosphorelay sensor kinase activity | 1.25E-02 |
89 | GO:0005262: calcium channel activity | 1.25E-02 |
90 | GO:0016887: ATPase activity | 1.64E-02 |
91 | GO:0043424: protein histidine kinase binding | 1.84E-02 |
92 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.84E-02 |
93 | GO:0015079: potassium ion transmembrane transporter activity | 1.84E-02 |
94 | GO:0033612: receptor serine/threonine kinase binding | 1.97E-02 |
95 | GO:0003964: RNA-directed DNA polymerase activity | 1.97E-02 |
96 | GO:0008408: 3'-5' exonuclease activity | 1.97E-02 |
97 | GO:0051082: unfolded protein binding | 2.32E-02 |
98 | GO:0047134: protein-disulfide reductase activity | 2.51E-02 |
99 | GO:0004527: exonuclease activity | 2.80E-02 |
100 | GO:0003713: transcription coactivator activity | 2.80E-02 |
101 | GO:0019843: rRNA binding | 2.91E-02 |
102 | GO:0004791: thioredoxin-disulfide reductase activity | 2.95E-02 |
103 | GO:0019901: protein kinase binding | 3.10E-02 |
104 | GO:0030170: pyridoxal phosphate binding | 3.23E-02 |
105 | GO:0005507: copper ion binding | 3.39E-02 |
106 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.57E-02 |
107 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.74E-02 |
108 | GO:0008483: transaminase activity | 3.89E-02 |
109 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.89E-02 |
110 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 3.89E-02 |
111 | GO:0008017: microtubule binding | 4.19E-02 |
112 | GO:0030247: polysaccharide binding | 4.75E-02 |