GO Enrichment Analysis of Co-expressed Genes with
AT3G54720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 2 | GO:0033206: meiotic cytokinesis | 4.74E-05 |
| 3 | GO:0018022: peptidyl-lysine methylation | 1.17E-04 |
| 4 | GO:0010424: DNA methylation on cytosine within a CG sequence | 1.17E-04 |
| 5 | GO:0090309: positive regulation of methylation-dependent chromatin silencing | 1.17E-04 |
| 6 | GO:0010589: leaf proximal/distal pattern formation | 2.00E-04 |
| 7 | GO:0032776: DNA methylation on cytosine | 2.00E-04 |
| 8 | GO:0071705: nitrogen compound transport | 2.00E-04 |
| 9 | GO:0006168: adenine salvage | 2.94E-04 |
| 10 | GO:0006166: purine ribonucleoside salvage | 2.94E-04 |
| 11 | GO:0010090: trichome morphogenesis | 3.41E-04 |
| 12 | GO:1900864: mitochondrial RNA modification | 3.94E-04 |
| 13 | GO:0071249: cellular response to nitrate | 3.94E-04 |
| 14 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 3.94E-04 |
| 15 | GO:2000038: regulation of stomatal complex development | 3.94E-04 |
| 16 | GO:0044209: AMP salvage | 5.00E-04 |
| 17 | GO:0032876: negative regulation of DNA endoreduplication | 5.00E-04 |
| 18 | GO:0030308: negative regulation of cell growth | 5.00E-04 |
| 19 | GO:0009616: virus induced gene silencing | 5.00E-04 |
| 20 | GO:0042176: regulation of protein catabolic process | 6.13E-04 |
| 21 | GO:0035435: phosphate ion transmembrane transport | 6.13E-04 |
| 22 | GO:2000037: regulation of stomatal complex patterning | 7.31E-04 |
| 23 | GO:0000911: cytokinesis by cell plate formation | 7.31E-04 |
| 24 | GO:2000033: regulation of seed dormancy process | 7.31E-04 |
| 25 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 8.54E-04 |
| 26 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 9.81E-04 |
| 27 | GO:0010093: specification of floral organ identity | 1.11E-03 |
| 28 | GO:0001510: RNA methylation | 1.11E-03 |
| 29 | GO:0006261: DNA-dependent DNA replication | 1.11E-03 |
| 30 | GO:0009245: lipid A biosynthetic process | 1.25E-03 |
| 31 | GO:0030422: production of siRNA involved in RNA interference | 1.55E-03 |
| 32 | GO:0009740: gibberellic acid mediated signaling pathway | 1.57E-03 |
| 33 | GO:0010216: maintenance of DNA methylation | 1.70E-03 |
| 34 | GO:0008361: regulation of cell size | 1.86E-03 |
| 35 | GO:0015706: nitrate transport | 1.86E-03 |
| 36 | GO:0010167: response to nitrate | 2.38E-03 |
| 37 | GO:2000377: regulation of reactive oxygen species metabolic process | 2.74E-03 |
| 38 | GO:0009863: salicylic acid mediated signaling pathway | 2.74E-03 |
| 39 | GO:0010187: negative regulation of seed germination | 2.74E-03 |
| 40 | GO:0009686: gibberellin biosynthetic process | 3.52E-03 |
| 41 | GO:0006284: base-excision repair | 3.73E-03 |
| 42 | GO:0010501: RNA secondary structure unwinding | 4.15E-03 |
| 43 | GO:0042631: cellular response to water deprivation | 4.15E-03 |
| 44 | GO:0046323: glucose import | 4.37E-03 |
| 45 | GO:0010305: leaf vascular tissue pattern formation | 4.37E-03 |
| 46 | GO:0006351: transcription, DNA-templated | 5.40E-03 |
| 47 | GO:0009567: double fertilization forming a zygote and endosperm | 5.75E-03 |
| 48 | GO:0009639: response to red or far red light | 5.75E-03 |
| 49 | GO:0010029: regulation of seed germination | 6.75E-03 |
| 50 | GO:0010218: response to far red light | 8.37E-03 |
| 51 | GO:0009867: jasmonic acid mediated signaling pathway | 9.22E-03 |
| 52 | GO:0010114: response to red light | 1.10E-02 |
| 53 | GO:0009965: leaf morphogenesis | 1.20E-02 |
| 54 | GO:0006412: translation | 1.26E-02 |
| 55 | GO:0042538: hyperosmotic salinity response | 1.29E-02 |
| 56 | GO:0009416: response to light stimulus | 1.42E-02 |
| 57 | GO:0009909: regulation of flower development | 1.46E-02 |
| 58 | GO:0016569: covalent chromatin modification | 1.67E-02 |
| 59 | GO:0016567: protein ubiquitination | 2.29E-02 |
| 60 | GO:0006633: fatty acid biosynthetic process | 2.41E-02 |
| 61 | GO:0009651: response to salt stress | 2.59E-02 |
| 62 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.66E-02 |
| 63 | GO:0009739: response to gibberellin | 2.79E-02 |
| 64 | GO:0009414: response to water deprivation | 2.82E-02 |
| 65 | GO:0006355: regulation of transcription, DNA-templated | 3.48E-02 |
| 66 | GO:0009658: chloroplast organization | 3.51E-02 |
| 67 | GO:0042254: ribosome biogenesis | 3.56E-02 |
| 68 | GO:0006970: response to osmotic stress | 3.70E-02 |
| 69 | GO:0009723: response to ethylene | 3.90E-02 |
| 70 | GO:0080167: response to karrikin | 4.09E-02 |
| 71 | GO:0046777: protein autophosphorylation | 4.30E-02 |
| 72 | GO:0045892: negative regulation of transcription, DNA-templated | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010429: methyl-CpNpN binding | 2.00E-04 |
| 2 | GO:0016707: gibberellin 3-beta-dioxygenase activity | 2.00E-04 |
| 3 | GO:0010428: methyl-CpNpG binding | 2.00E-04 |
| 4 | GO:0070181: small ribosomal subunit rRNA binding | 2.00E-04 |
| 5 | GO:0005354: galactose transmembrane transporter activity | 2.94E-04 |
| 6 | GO:0003999: adenine phosphoribosyltransferase activity | 2.94E-04 |
| 7 | GO:0016279: protein-lysine N-methyltransferase activity | 3.94E-04 |
| 8 | GO:0008725: DNA-3-methyladenine glycosylase activity | 5.00E-04 |
| 9 | GO:0031177: phosphopantetheine binding | 6.13E-04 |
| 10 | GO:0003735: structural constituent of ribosome | 6.16E-04 |
| 11 | GO:0003697: single-stranded DNA binding | 7.02E-04 |
| 12 | GO:0000035: acyl binding | 7.31E-04 |
| 13 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 9.81E-04 |
| 14 | GO:0008173: RNA methyltransferase activity | 1.11E-03 |
| 15 | GO:0000989: transcription factor activity, transcription factor binding | 1.25E-03 |
| 16 | GO:0008171: O-methyltransferase activity | 1.55E-03 |
| 17 | GO:0008327: methyl-CpG binding | 1.70E-03 |
| 18 | GO:0015114: phosphate ion transmembrane transporter activity | 2.03E-03 |
| 19 | GO:0008134: transcription factor binding | 2.74E-03 |
| 20 | GO:0004527: exonuclease activity | 4.37E-03 |
| 21 | GO:0005355: glucose transmembrane transporter activity | 4.59E-03 |
| 22 | GO:0016759: cellulose synthase activity | 5.75E-03 |
| 23 | GO:0004871: signal transducer activity | 6.79E-03 |
| 24 | GO:0004004: ATP-dependent RNA helicase activity | 7.28E-03 |
| 25 | GO:0003677: DNA binding | 7.49E-03 |
| 26 | GO:0003690: double-stranded DNA binding | 1.39E-02 |
| 27 | GO:0004650: polygalacturonase activity | 1.64E-02 |
| 28 | GO:0008026: ATP-dependent helicase activity | 1.82E-02 |
| 29 | GO:0019843: rRNA binding | 2.05E-02 |
| 30 | GO:0016829: lyase activity | 2.16E-02 |
| 31 | GO:0003723: RNA binding | 2.30E-02 |
| 32 | GO:0015144: carbohydrate transmembrane transporter activity | 2.33E-02 |
| 33 | GO:0005351: sugar:proton symporter activity | 2.53E-02 |
| 34 | GO:0008194: UDP-glycosyltransferase activity | 2.79E-02 |
| 35 | GO:0003824: catalytic activity | 3.17E-02 |
| 36 | GO:0046983: protein dimerization activity | 3.85E-02 |
| 37 | GO:0061630: ubiquitin protein ligase activity | 4.24E-02 |