co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G54620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
2	GO:0006858: extracellular transport	0.00E+00
3	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
4	GO:0060862: negative regulation of floral organ abscission	6.58E-05
5	GO:0080120: CAAX-box protein maturation	6.58E-05
6	GO:0071280: cellular response to copper ion	6.58E-05
7	GO:0046208: spermine catabolic process	6.58E-05
8	GO:0071586: CAAX-box protein processing	6.58E-05
9	GO:0003400: regulation of COPII vesicle coating	6.58E-05
10	GO:1902000: homogentisate catabolic process	1.59E-04
11	GO:0042814: monopolar cell growth	1.59E-04
12	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.59E-04
13	GO:0031349: positive regulation of defense response	1.59E-04
14	GO:1901703: protein localization involved in auxin polar transport	1.59E-04
15	GO:0080026: response to indolebutyric acid	1.59E-04
16	GO:0071457: cellular response to ozone	1.59E-04
17	GO:0006501: C-terminal protein lipidation	1.59E-04
18	GO:0015865: purine nucleotide transport	1.59E-04
19	GO:0009062: fatty acid catabolic process	2.69E-04
20	GO:0090630: activation of GTPase activity	2.69E-04
21	GO:0072661: protein targeting to plasma membrane	2.69E-04
22	GO:0009072: aromatic amino acid family metabolic process	2.69E-04
23	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	2.69E-04
24	GO:0006598: polyamine catabolic process	2.69E-04
25	GO:0006556: S-adenosylmethionine biosynthetic process	2.69E-04
26	GO:0080024: indolebutyric acid metabolic process	3.90E-04
27	GO:0001676: long-chain fatty acid metabolic process	3.90E-04
28	GO:0006571: tyrosine biosynthetic process	3.90E-04
29	GO:0071484: cellular response to light intensity	3.90E-04
30	GO:0046902: regulation of mitochondrial membrane permeability	3.90E-04
31	GO:0071329: cellular response to sucrose stimulus	3.90E-04
32	GO:0010193: response to ozone	4.56E-04
33	GO:0042594: response to starvation	5.20E-04
34	GO:0044804: nucleophagy	5.20E-04
35	GO:0000919: cell plate assembly	5.20E-04
36	GO:0018344: protein geranylgeranylation	6.60E-04
37	GO:0071493: cellular response to UV-B	6.60E-04
38	GO:0009164: nucleoside catabolic process	6.60E-04
39	GO:0016131: brassinosteroid metabolic process	6.60E-04
40	GO:0000422: mitophagy	6.60E-04
41	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.87E-04
42	GO:0010942: positive regulation of cell death	8.06E-04
43	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	8.06E-04
44	GO:0009228: thiamine biosynthetic process	8.06E-04
45	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	8.06E-04
46	GO:0000045: autophagosome assembly	8.06E-04
47	GO:0060918: auxin transport	8.06E-04
48	GO:0006694: steroid biosynthetic process	9.59E-04
49	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.59E-04
50	GO:0009094: L-phenylalanine biosynthetic process	9.59E-04
51	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.12E-03
52	GO:0006887: exocytosis	1.24E-03
53	GO:0007186: G-protein coupled receptor signaling pathway	1.47E-03
54	GO:0019430: removal of superoxide radicals	1.47E-03
55	GO:0090333: regulation of stomatal closure	1.65E-03
56	GO:0030042: actin filament depolymerization	1.85E-03
57	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.85E-03
58	GO:0006995: cellular response to nitrogen starvation	2.05E-03
59	GO:0072593: reactive oxygen species metabolic process	2.26E-03
60	GO:0071365: cellular response to auxin stimulus	2.48E-03
61	GO:0055046: microgametogenesis	2.70E-03
62	GO:0010102: lateral root morphogenesis	2.70E-03
63	GO:0009785: blue light signaling pathway	2.70E-03
64	GO:0010540: basipetal auxin transport	2.93E-03
65	GO:0010039: response to iron ion	3.16E-03
66	GO:0046688: response to copper ion	3.16E-03
67	GO:0009269: response to desiccation	4.17E-03
68	GO:0006730: one-carbon metabolic process	4.43E-03
69	GO:0010227: floral organ abscission	4.70E-03
70	GO:0009693: ethylene biosynthetic process	4.70E-03
71	GO:0071215: cellular response to abscisic acid stimulus	4.70E-03
72	GO:0042127: regulation of cell proliferation	4.98E-03
73	GO:0009306: protein secretion	4.98E-03
74	GO:0009561: megagametogenesis	4.98E-03
75	GO:0006817: phosphate ion transport	4.98E-03
76	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	5.26E-03
77	GO:0071472: cellular response to salt stress	5.85E-03
78	GO:0009749: response to glucose	6.45E-03
79	GO:0006635: fatty acid beta-oxidation	6.76E-03
80	GO:0032502: developmental process	7.08E-03
81	GO:0009630: gravitropism	7.08E-03
82	GO:0071281: cellular response to iron ion	7.40E-03
83	GO:0006464: cellular protein modification process	7.73E-03
84	GO:0006914: autophagy	7.73E-03
85	GO:0006904: vesicle docking involved in exocytosis	8.06E-03
86	GO:0010027: thylakoid membrane organization	8.74E-03
87	GO:0006906: vesicle fusion	9.44E-03
88	GO:0055114: oxidation-reduction process	9.69E-03
89	GO:0006950: response to stress	9.79E-03
90	GO:0006888: ER to Golgi vesicle-mediated transport	9.79E-03
91	GO:0008219: cell death	1.05E-02
92	GO:0048767: root hair elongation	1.09E-02
93	GO:0006499: N-terminal protein myristoylation	1.13E-02
94	GO:0009407: toxin catabolic process	1.13E-02
95	GO:0010119: regulation of stomatal movement	1.17E-02
96	GO:0016051: carbohydrate biosynthetic process	1.24E-02
97	GO:0009853: photorespiration	1.24E-02
98	GO:0035195: gene silencing by miRNA	1.24E-02
99	GO:0034599: cellular response to oxidative stress	1.28E-02
100	GO:0048364: root development	1.28E-02
101	GO:0015031: protein transport	1.31E-02
102	GO:0006839: mitochondrial transport	1.36E-02
103	GO:0006897: endocytosis	1.40E-02
104	GO:0006631: fatty acid metabolic process	1.40E-02
105	GO:0008283: cell proliferation	1.49E-02
106	GO:0000209: protein polyubiquitination	1.53E-02
107	GO:0009636: response to toxic substance	1.62E-02
108	GO:0006855: drug transmembrane transport	1.66E-02
109	GO:0046686: response to cadmium ion	1.70E-02
110	GO:0031347: regulation of defense response	1.70E-02
111	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.70E-02
112	GO:0009809: lignin biosynthetic process	1.84E-02
113	GO:0051603: proteolysis involved in cellular protein catabolic process	1.88E-02
114	GO:0009740: gibberellic acid mediated signaling pathway	2.26E-02
115	GO:0009742: brassinosteroid mediated signaling pathway	2.46E-02
116	GO:0051726: regulation of cell cycle	2.46E-02
117	GO:0000398: mRNA splicing, via spliceosome	2.62E-02
118	GO:0055085: transmembrane transport	2.77E-02
119	GO:0009058: biosynthetic process	2.88E-02
120	GO:0009845: seed germination	2.93E-02
121	GO:0006511: ubiquitin-dependent protein catabolic process	2.97E-02
122	GO:0006413: translational initiation	3.32E-02
123	GO:0010150: leaf senescence	3.49E-02
124	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.78E-02
125	GO:0016567: protein ubiquitination	3.91E-02
126	GO:0009414: response to water deprivation	4.30E-02
127	GO:0009651: response to salt stress	4.41E-02
128	GO:0009733: response to auxin	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
2	GO:0016247: channel regulator activity	0.00E+00
3	GO:0005095: GTPase inhibitor activity	0.00E+00
4	GO:0051020: GTPase binding	1.63E-05
5	GO:0052894: norspermine:oxygen oxidoreductase activity	6.58E-05
6	GO:0004662: CAAX-protein geranylgeranyltransferase activity	6.58E-05
7	GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity	6.58E-05
8	GO:0005090: Sar guanyl-nucleotide exchange factor activity	6.58E-05
9	GO:0019172: glyoxalase III activity	1.59E-04
10	GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity	1.59E-04
11	GO:0022821: potassium ion antiporter activity	1.59E-04
12	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	1.59E-04
13	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.69E-04
14	GO:0004478: methionine adenosyltransferase activity	2.69E-04
15	GO:0001664: G-protein coupled receptor binding	2.69E-04
16	GO:0046592: polyamine oxidase activity	2.69E-04
17	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	2.69E-04
18	GO:0031683: G-protein beta/gamma-subunit complex binding	2.69E-04
19	GO:0004165: dodecenoyl-CoA delta-isomerase activity	3.90E-04
20	GO:0004416: hydroxyacylglutathione hydrolase activity	3.90E-04
21	GO:0019776: Atg8 ligase activity	5.20E-04
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.20E-04
23	GO:0005471: ATP:ADP antiporter activity	6.60E-04
24	GO:0004523: RNA-DNA hybrid ribonuclease activity	6.60E-04
25	GO:0004784: superoxide dismutase activity	8.06E-04
26	GO:0005096: GTPase activator activity	8.81E-04
27	GO:0102391: decanoate--CoA ligase activity	9.59E-04
28	GO:0004467: long-chain fatty acid-CoA ligase activity	1.12E-03
29	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.29E-03
30	GO:0004364: glutathione transferase activity	1.29E-03
31	GO:0052747: sinapyl alcohol dehydrogenase activity	1.29E-03
32	GO:0004713: protein tyrosine kinase activity	2.05E-03
33	GO:0008794: arsenate reductase (glutaredoxin) activity	2.26E-03
34	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.48E-03
35	GO:0004175: endopeptidase activity	2.93E-03
36	GO:0008134: transcription factor binding	3.65E-03
37	GO:0035251: UDP-glucosyltransferase activity	4.17E-03
38	GO:0010181: FMN binding	6.15E-03
39	GO:0005507: copper ion binding	6.18E-03
40	GO:0046982: protein heterodimerization activity	6.57E-03
41	GO:0061630: ubiquitin protein ligase activity	8.73E-03
42	GO:0008375: acetylglucosaminyltransferase activity	9.44E-03
43	GO:0015238: drug transmembrane transporter activity	1.09E-02
44	GO:0005215: transporter activity	1.10E-02
45	GO:0004222: metalloendopeptidase activity	1.13E-02
46	GO:0003924: GTPase activity	1.23E-02
47	GO:0000149: SNARE binding	1.32E-02
48	GO:0009055: electron carrier activity	1.32E-02
49	GO:0005484: SNAP receptor activity	1.49E-02
50	GO:0031625: ubiquitin protein ligase binding	1.98E-02
51	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.12E-02
52	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.21E-02
53	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.21E-02
54	GO:0003779: actin binding	2.31E-02
55	GO:0015035: protein disulfide oxidoreductase activity	2.41E-02
56	GO:0016740: transferase activity	2.67E-02
57	GO:0016758: transferase activity, transferring hexosyl groups	2.72E-02
58	GO:0016829: lyase activity	2.93E-02
59	GO:0008565: protein transporter activity	3.15E-02
60	GO:0015297: antiporter activity	3.37E-02
61	GO:0046872: metal ion binding	3.51E-02
62	GO:0005525: GTP binding	3.59E-02
63	GO:0008194: UDP-glycosyltransferase activity	3.78E-02
64	GO:0003743: translation initiation factor activity	3.89E-02
65	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.13E-02
66	GO:0008270: zinc ion binding	4.15E-02
67	GO:0004601: peroxidase activity	4.75E-02
68	GO:0003824: catalytic activity	4.83E-02