Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G54090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
4GO:0035884: arabinan biosynthetic process0.00E+00
5GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
6GO:0097164: ammonium ion metabolic process0.00E+00
7GO:0070455: positive regulation of heme biosynthetic process0.00E+00
8GO:0045184: establishment of protein localization0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0015843: methylammonium transport0.00E+00
11GO:0031222: arabinan catabolic process0.00E+00
12GO:1901333: positive regulation of lateral root development0.00E+00
13GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
14GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
15GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
16GO:0009606: tropism0.00E+00
17GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
18GO:0046620: regulation of organ growth1.11E-08
19GO:0009734: auxin-activated signaling pathway1.50E-07
20GO:0009451: RNA modification1.32E-06
21GO:0009926: auxin polar transport1.91E-06
22GO:0042793: transcription from plastid promoter1.21E-05
23GO:0009658: chloroplast organization5.04E-05
24GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.08E-04
25GO:0009733: response to auxin1.42E-04
26GO:0009828: plant-type cell wall loosening2.81E-04
27GO:0009904: chloroplast accumulation movement2.95E-04
28GO:0010027: thylakoid membrane organization3.75E-04
29GO:0009903: chloroplast avoidance movement5.47E-04
30GO:2000067: regulation of root morphogenesis5.47E-04
31GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.16E-04
32GO:0010063: positive regulation of trichoblast fate specification6.16E-04
33GO:0090558: plant epidermis development6.16E-04
34GO:0010480: microsporocyte differentiation6.16E-04
35GO:1903866: palisade mesophyll development6.16E-04
36GO:0035987: endodermal cell differentiation6.16E-04
37GO:0043609: regulation of carbon utilization6.16E-04
38GO:0006436: tryptophanyl-tRNA aminoacylation6.16E-04
39GO:0000066: mitochondrial ornithine transport6.16E-04
40GO:0050801: ion homeostasis6.16E-04
41GO:0050891: multicellular organismal water homeostasis6.16E-04
42GO:0034757: negative regulation of iron ion transport6.16E-04
43GO:0010376: stomatal complex formation6.16E-04
44GO:0042659: regulation of cell fate specification6.16E-04
45GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.16E-04
46GO:0048437: floral organ development7.00E-04
47GO:0000105: histidine biosynthetic process8.71E-04
48GO:0009657: plastid organization1.06E-03
49GO:0007389: pattern specification process1.06E-03
50GO:0006002: fructose 6-phosphate metabolic process1.06E-03
51GO:0000373: Group II intron splicing1.26E-03
52GO:0010271: regulation of chlorophyll catabolic process1.32E-03
53GO:0060359: response to ammonium ion1.32E-03
54GO:0048255: mRNA stabilization1.32E-03
55GO:0018026: peptidyl-lysine monomethylation1.32E-03
56GO:1902326: positive regulation of chlorophyll biosynthetic process1.32E-03
57GO:0071497: cellular response to freezing1.32E-03
58GO:0009662: etioplast organization1.32E-03
59GO:0042325: regulation of phosphorylation1.32E-03
60GO:0010235: guard mother cell cytokinesis1.32E-03
61GO:1904143: positive regulation of carotenoid biosynthetic process1.32E-03
62GO:0080009: mRNA methylation1.32E-03
63GO:0042550: photosystem I stabilization1.32E-03
64GO:0006529: asparagine biosynthetic process1.32E-03
65GO:2000123: positive regulation of stomatal complex development1.32E-03
66GO:0061087: positive regulation of histone H3-K27 methylation1.32E-03
67GO:0009629: response to gravity1.32E-03
68GO:0070981: L-asparagine biosynthetic process1.32E-03
69GO:0010583: response to cyclopentenone1.64E-03
70GO:0010252: auxin homeostasis1.93E-03
71GO:0006000: fructose metabolic process2.18E-03
72GO:0090436: leaf pavement cell development2.18E-03
73GO:0042780: tRNA 3'-end processing2.18E-03
74GO:0001578: microtubule bundle formation2.18E-03
75GO:0043157: response to cation stress2.18E-03
76GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.18E-03
77GO:0010447: response to acidic pH2.18E-03
78GO:0080117: secondary growth2.18E-03
79GO:0031022: nuclear migration along microfilament2.18E-03
80GO:0090708: specification of plant organ axis polarity2.18E-03
81GO:1902806: regulation of cell cycle G1/S phase transition2.18E-03
82GO:0090391: granum assembly2.18E-03
83GO:0045037: protein import into chloroplast stroma2.32E-03
84GO:0010020: chloroplast fission2.98E-03
85GO:2000904: regulation of starch metabolic process3.17E-03
86GO:0051289: protein homotetramerization3.17E-03
87GO:0043572: plastid fission3.17E-03
88GO:2001141: regulation of RNA biosynthetic process3.17E-03
89GO:0016556: mRNA modification3.17E-03
90GO:1902476: chloride transmembrane transport3.17E-03
91GO:0010071: root meristem specification3.17E-03
92GO:0051639: actin filament network formation3.17E-03
93GO:0009800: cinnamic acid biosynthetic process3.17E-03
94GO:0033014: tetrapyrrole biosynthetic process3.17E-03
95GO:0010306: rhamnogalacturonan II biosynthetic process3.17E-03
96GO:0010239: chloroplast mRNA processing3.17E-03
97GO:0044211: CTP salvage3.17E-03
98GO:0015696: ammonium transport3.17E-03
99GO:0046739: transport of virus in multicellular host3.17E-03
100GO:0000160: phosphorelay signal transduction system3.63E-03
101GO:0009416: response to light stimulus3.72E-03
102GO:0005992: trehalose biosynthetic process4.15E-03
103GO:0006021: inositol biosynthetic process4.28E-03
104GO:0044206: UMP salvage4.28E-03
105GO:0006346: methylation-dependent chromatin silencing4.28E-03
106GO:1901141: regulation of lignin biosynthetic process4.28E-03
107GO:0006479: protein methylation4.28E-03
108GO:1901002: positive regulation of response to salt stress4.28E-03
109GO:0051764: actin crosslink formation4.28E-03
110GO:0015846: polyamine transport4.28E-03
111GO:0051322: anaphase4.28E-03
112GO:0030104: water homeostasis4.28E-03
113GO:2000038: regulation of stomatal complex development4.28E-03
114GO:0046656: folic acid biosynthetic process4.28E-03
115GO:1902584: positive regulation of response to water deprivation4.28E-03
116GO:0072488: ammonium transmembrane transport4.28E-03
117GO:0016998: cell wall macromolecule catabolic process5.04E-03
118GO:0048497: maintenance of floral organ identity5.49E-03
119GO:0006544: glycine metabolic process5.49E-03
120GO:0009107: lipoate biosynthetic process5.49E-03
121GO:1902183: regulation of shoot apical meristem development5.49E-03
122GO:0016123: xanthophyll biosynthetic process5.49E-03
123GO:0010158: abaxial cell fate specification5.49E-03
124GO:0048578: positive regulation of long-day photoperiodism, flowering5.49E-03
125GO:0010375: stomatal complex patterning5.49E-03
126GO:0010082: regulation of root meristem growth6.03E-03
127GO:0010315: auxin efflux6.81E-03
128GO:0006559: L-phenylalanine catabolic process6.81E-03
129GO:0006206: pyrimidine nucleobase metabolic process6.81E-03
130GO:0018258: protein O-linked glycosylation via hydroxyproline6.81E-03
131GO:0006563: L-serine metabolic process6.81E-03
132GO:0009228: thiamine biosynthetic process6.81E-03
133GO:0010405: arabinogalactan protein metabolic process6.81E-03
134GO:0010304: PSII associated light-harvesting complex II catabolic process6.81E-03
135GO:0009959: negative gravitropism6.81E-03
136GO:0009913: epidermal cell differentiation6.81E-03
137GO:0006655: phosphatidylglycerol biosynthetic process6.81E-03
138GO:1902456: regulation of stomatal opening6.81E-03
139GO:0048831: regulation of shoot system development6.81E-03
140GO:0040008: regulation of growth7.09E-03
141GO:0009942: longitudinal axis specification8.24E-03
142GO:0048509: regulation of meristem development8.24E-03
143GO:0046654: tetrahydrofolate biosynthetic process8.24E-03
144GO:0030488: tRNA methylation8.24E-03
145GO:0009554: megasporogenesis8.24E-03
146GO:1901259: chloroplast rRNA processing8.24E-03
147GO:2000037: regulation of stomatal complex patterning8.24E-03
148GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.24E-03
149GO:0009955: adaxial/abaxial pattern specification8.24E-03
150GO:0071470: cellular response to osmotic stress8.24E-03
151GO:0009741: response to brassinosteroid8.31E-03
152GO:0009664: plant-type cell wall organization8.57E-03
153GO:0007018: microtubule-based movement8.94E-03
154GO:0009646: response to absence of light8.94E-03
155GO:0009736: cytokinin-activated signaling pathway9.38E-03
156GO:0010050: vegetative phase change9.76E-03
157GO:0010444: guard mother cell differentiation9.76E-03
158GO:0006400: tRNA modification9.76E-03
159GO:0030307: positive regulation of cell growth9.76E-03
160GO:0009396: folic acid-containing compound biosynthetic process9.76E-03
161GO:0009610: response to symbiotic fungus9.76E-03
162GO:0006955: immune response9.76E-03
163GO:0007050: cell cycle arrest9.76E-03
164GO:0006821: chloride transport9.76E-03
165GO:0009630: gravitropism1.10E-02
166GO:0019375: galactolipid biosynthetic process1.14E-02
167GO:0009787: regulation of abscisic acid-activated signaling pathway1.14E-02
168GO:0032875: regulation of DNA endoreduplication1.14E-02
169GO:0048766: root hair initiation1.14E-02
170GO:0070413: trehalose metabolism in response to stress1.14E-02
171GO:0055075: potassium ion homeostasis1.14E-02
172GO:0048564: photosystem I assembly1.14E-02
173GO:0001522: pseudouridine synthesis1.14E-02
174GO:0009850: auxin metabolic process1.14E-02
175GO:0006526: arginine biosynthetic process1.31E-02
176GO:0032544: plastid translation1.31E-02
177GO:0010497: plasmodesmata-mediated intercellular transport1.31E-02
178GO:0071482: cellular response to light stimulus1.31E-02
179GO:0010052: guard cell differentiation1.31E-02
180GO:0007275: multicellular organism development1.35E-02
181GO:0009826: unidimensional cell growth1.40E-02
182GO:0006783: heme biosynthetic process1.49E-02
183GO:0000902: cell morphogenesis1.49E-02
184GO:2000024: regulation of leaf development1.49E-02
185GO:0009742: brassinosteroid mediated signaling pathway1.59E-02
186GO:0042761: very long-chain fatty acid biosynthetic process1.67E-02
187GO:2000280: regulation of root development1.67E-02
188GO:0009638: phototropism1.67E-02
189GO:0006974: cellular response to DNA damage stimulus1.67E-02
190GO:0035999: tetrahydrofolate interconversion1.67E-02
191GO:0010411: xyloglucan metabolic process1.77E-02
192GO:0006508: proteolysis1.86E-02
193GO:0045036: protein targeting to chloroplast1.87E-02
194GO:0006949: syncytium formation1.87E-02
195GO:0006259: DNA metabolic process1.87E-02
196GO:0031627: telomeric loop formation1.87E-02
197GO:0006535: cysteine biosynthetic process from serine1.87E-02
198GO:0048481: plant ovule development1.96E-02
199GO:0006352: DNA-templated transcription, initiation2.07E-02
200GO:0048229: gametophyte development2.07E-02
201GO:0010015: root morphogenesis2.07E-02
202GO:0006265: DNA topological change2.07E-02
203GO:0009089: lysine biosynthetic process via diaminopimelate2.07E-02
204GO:0006499: N-terminal protein myristoylation2.16E-02
205GO:0016024: CDP-diacylglycerol biosynthetic process2.28E-02
206GO:0010582: floral meristem determinacy2.28E-02
207GO:0006790: sulfur compound metabolic process2.28E-02
208GO:0009790: embryo development2.38E-02
209GO:0009637: response to blue light2.49E-02
210GO:2000012: regulation of auxin polar transport2.50E-02
211GO:0009785: blue light signaling pathway2.50E-02
212GO:0009691: cytokinin biosynthetic process2.50E-02
213GO:0010075: regulation of meristem growth2.50E-02
214GO:0009767: photosynthetic electron transport chain2.50E-02
215GO:0034599: cellular response to oxidative stress2.60E-02
216GO:0006541: glutamine metabolic process2.73E-02
217GO:0009934: regulation of meristem structural organization2.73E-02
218GO:0010207: photosystem II assembly2.73E-02
219GO:0006839: mitochondrial transport2.83E-02
220GO:0006468: protein phosphorylation2.95E-02
221GO:0010039: response to iron ion2.96E-02
222GO:0090351: seedling development2.96E-02
223GO:0046854: phosphatidylinositol phosphorylation2.96E-02
224GO:0006071: glycerol metabolic process3.20E-02
225GO:0006833: water transport3.20E-02
226GO:0010114: response to red light3.21E-02
227GO:0042546: cell wall biogenesis3.34E-02
228GO:0000027: ribosomal large subunit assembly3.44E-02
229GO:0051017: actin filament bundle assembly3.44E-02
230GO:0019344: cysteine biosynthetic process3.44E-02
231GO:0009944: polarity specification of adaxial/abaxial axis3.44E-02
232GO:0007166: cell surface receptor signaling pathway3.48E-02
233GO:0006418: tRNA aminoacylation for protein translation3.69E-02
234GO:0010073: meristem maintenance3.69E-02
235GO:0051302: regulation of cell division3.69E-02
236GO:0019953: sexual reproduction3.69E-02
237GO:0006306: DNA methylation3.95E-02
238GO:0031408: oxylipin biosynthetic process3.95E-02
239GO:0031348: negative regulation of defense response4.21E-02
240GO:0006730: one-carbon metabolic process4.21E-02
241GO:0080092: regulation of pollen tube growth4.21E-02
242GO:0009793: embryo development ending in seed dormancy4.33E-02
243GO:0071215: cellular response to abscisic acid stimulus4.48E-02
244GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.48E-02
245GO:0042127: regulation of cell proliferation4.75E-02
246GO:0006284: base-excision repair4.75E-02
247GO:0010091: trichome branching4.75E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:0004401: histidinol-phosphatase activity0.00E+00
3GO:0004358: glutamate N-acetyltransferase activity0.00E+00
4GO:0070009: serine-type aminopeptidase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
8GO:0019808: polyamine binding0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0004519: endonuclease activity8.72E-05
11GO:0009982: pseudouridine synthase activity2.60E-04
12GO:0008237: metallopeptidase activity3.10E-04
13GO:0004176: ATP-dependent peptidase activity6.15E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.16E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.16E-04
16GO:0004156: dihydropteroate synthase activity6.16E-04
17GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.16E-04
18GO:0005290: L-histidine transmembrane transporter activity6.16E-04
19GO:0004071: aspartate-ammonia ligase activity6.16E-04
20GO:0046481: digalactosyldiacylglycerol synthase activity6.16E-04
21GO:0004830: tryptophan-tRNA ligase activity6.16E-04
22GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.16E-04
23GO:0052381: tRNA dimethylallyltransferase activity6.16E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity6.16E-04
25GO:0004400: histidinol-phosphate transaminase activity6.16E-04
26GO:0046480: galactolipid galactosyltransferase activity6.16E-04
27GO:0008836: diaminopimelate decarboxylase activity6.16E-04
28GO:0016274: protein-arginine N-methyltransferase activity6.16E-04
29GO:0042834: peptidoglycan binding6.16E-04
30GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.16E-04
31GO:0003723: RNA binding9.81E-04
32GO:0008934: inositol monophosphate 1-phosphatase activity1.32E-03
33GO:0052833: inositol monophosphate 4-phosphatase activity1.32E-03
34GO:0000064: L-ornithine transmembrane transporter activity1.32E-03
35GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.32E-03
36GO:0009884: cytokinin receptor activity1.32E-03
37GO:0017118: lipoyltransferase activity1.32E-03
38GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.32E-03
39GO:0016415: octanoyltransferase activity1.32E-03
40GO:0052832: inositol monophosphate 3-phosphatase activity1.32E-03
41GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.32E-03
42GO:0009672: auxin:proton symporter activity1.50E-03
43GO:0004805: trehalose-phosphatase activity1.75E-03
44GO:0005089: Rho guanyl-nucleotide exchange factor activity2.02E-03
45GO:0017150: tRNA dihydrouridine synthase activity2.18E-03
46GO:0045548: phenylalanine ammonia-lyase activity2.18E-03
47GO:0042781: 3'-tRNA processing endoribonuclease activity2.18E-03
48GO:0016805: dipeptidase activity2.18E-03
49GO:0005034: osmosensor activity2.18E-03
50GO:0046524: sucrose-phosphate synthase activity2.18E-03
51GO:0070330: aromatase activity2.18E-03
52GO:0003777: microtubule motor activity2.24E-03
53GO:0010329: auxin efflux transmembrane transporter activity2.64E-03
54GO:0015181: arginine transmembrane transporter activity3.17E-03
55GO:0008508: bile acid:sodium symporter activity3.17E-03
56GO:0001872: (1->3)-beta-D-glucan binding3.17E-03
57GO:0015189: L-lysine transmembrane transporter activity3.17E-03
58GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity3.17E-03
59GO:0035250: UDP-galactosyltransferase activity3.17E-03
60GO:0004222: metalloendopeptidase activity3.87E-03
61GO:0005253: anion channel activity4.28E-03
62GO:0043495: protein anchor4.28E-03
63GO:0046556: alpha-L-arabinofuranosidase activity4.28E-03
64GO:0016279: protein-lysine N-methyltransferase activity4.28E-03
65GO:0001053: plastid sigma factor activity4.28E-03
66GO:0004845: uracil phosphoribosyltransferase activity4.28E-03
67GO:0016987: sigma factor activity4.28E-03
68GO:0018685: alkane 1-monooxygenase activity5.49E-03
69GO:0008725: DNA-3-methyladenine glycosylase activity5.49E-03
70GO:0004372: glycine hydroxymethyltransferase activity5.49E-03
71GO:0005275: amine transmembrane transporter activity5.49E-03
72GO:0008519: ammonium transmembrane transporter activity6.81E-03
73GO:0005247: voltage-gated chloride channel activity6.81E-03
74GO:2001070: starch binding6.81E-03
75GO:0004605: phosphatidate cytidylyltransferase activity6.81E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity6.81E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.24E-03
78GO:0019900: kinase binding8.24E-03
79GO:0004124: cysteine synthase activity8.24E-03
80GO:0008195: phosphatidate phosphatase activity8.24E-03
81GO:0004849: uridine kinase activity8.24E-03
82GO:0010181: FMN binding8.94E-03
83GO:0019901: protein kinase binding9.61E-03
84GO:0003872: 6-phosphofructokinase activity9.76E-03
85GO:0016762: xyloglucan:xyloglucosyl transferase activity1.03E-02
86GO:0000156: phosphorelay response regulator activity1.17E-02
87GO:0008173: RNA methyltransferase activity1.31E-02
88GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.31E-02
89GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity1.31E-02
90GO:0008889: glycerophosphodiester phosphodiesterase activity1.49E-02
91GO:0004672: protein kinase activity1.59E-02
92GO:0016798: hydrolase activity, acting on glycosyl bonds1.77E-02
93GO:0004673: protein histidine kinase activity1.87E-02
94GO:0003691: double-stranded telomeric DNA binding2.07E-02
95GO:0005215: transporter activity2.09E-02
96GO:0005524: ATP binding2.16E-02
97GO:0000976: transcription regulatory region sequence-specific DNA binding2.28E-02
98GO:0016887: ATPase activity2.48E-02
99GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.49E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity2.50E-02
101GO:0004089: carbonate dehydratase activity2.50E-02
102GO:0031072: heat shock protein binding2.50E-02
103GO:0000155: phosphorelay sensor kinase activity2.50E-02
104GO:0019888: protein phosphatase regulator activity2.50E-02
105GO:0003993: acid phosphatase activity2.60E-02
106GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.69E-02
107GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.73E-02
108GO:0051539: 4 iron, 4 sulfur cluster binding2.83E-02
109GO:0042803: protein homodimerization activity2.86E-02
110GO:0008017: microtubule binding3.11E-02
111GO:0043621: protein self-association3.47E-02
112GO:0043424: protein histidine kinase binding3.69E-02
113GO:0005345: purine nucleobase transmembrane transporter activity3.69E-02
114GO:0033612: receptor serine/threonine kinase binding3.95E-02
115GO:0003964: RNA-directed DNA polymerase activity3.95E-02
116GO:0004707: MAP kinase activity3.95E-02
117GO:0008408: 3'-5' exonuclease activity3.95E-02
118GO:0042802: identical protein binding3.96E-02
119GO:0003727: single-stranded RNA binding4.75E-02
120GO:0008514: organic anion transmembrane transporter activity4.75E-02
121GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.89E-02
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Gene type



Gene DE type