GO Enrichment Analysis of Co-expressed Genes with
AT3G54050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 4 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 5 | GO:0010207: photosystem II assembly | 4.36E-08 |
| 6 | GO:0015979: photosynthesis | 1.42E-07 |
| 7 | GO:0009772: photosynthetic electron transport in photosystem II | 2.71E-07 |
| 8 | GO:0009773: photosynthetic electron transport in photosystem I | 2.16E-06 |
| 9 | GO:0019253: reductive pentose-phosphate cycle | 4.38E-06 |
| 10 | GO:0055114: oxidation-reduction process | 4.65E-06 |
| 11 | GO:0034599: cellular response to oxidative stress | 6.21E-06 |
| 12 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.54E-06 |
| 13 | GO:0010600: regulation of auxin biosynthetic process | 7.70E-06 |
| 14 | GO:0006662: glycerol ether metabolic process | 2.54E-05 |
| 15 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 2.78E-05 |
| 16 | GO:0019252: starch biosynthetic process | 3.21E-05 |
| 17 | GO:0010196: nonphotochemical quenching | 3.77E-05 |
| 18 | GO:0010928: regulation of auxin mediated signaling pathway | 4.94E-05 |
| 19 | GO:0009704: de-etiolation | 4.94E-05 |
| 20 | GO:0006754: ATP biosynthetic process | 7.78E-05 |
| 21 | GO:1904964: positive regulation of phytol biosynthetic process | 9.14E-05 |
| 22 | GO:0051775: response to redox state | 9.14E-05 |
| 23 | GO:0071277: cellular response to calcium ion | 9.14E-05 |
| 24 | GO:0046467: membrane lipid biosynthetic process | 9.14E-05 |
| 25 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.14E-05 |
| 26 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.33E-04 |
| 27 | GO:0042742: defense response to bacterium | 1.70E-04 |
| 28 | GO:0006094: gluconeogenesis | 1.77E-04 |
| 29 | GO:0009735: response to cytokinin | 2.02E-04 |
| 30 | GO:0009658: chloroplast organization | 2.16E-04 |
| 31 | GO:0008616: queuosine biosynthetic process | 2.16E-04 |
| 32 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.16E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.16E-04 |
| 34 | GO:0035436: triose phosphate transmembrane transport | 3.61E-04 |
| 35 | GO:0006000: fructose metabolic process | 3.61E-04 |
| 36 | GO:0090391: granum assembly | 3.61E-04 |
| 37 | GO:0006518: peptide metabolic process | 3.61E-04 |
| 38 | GO:0045454: cell redox homeostasis | 4.09E-04 |
| 39 | GO:0071484: cellular response to light intensity | 5.20E-04 |
| 40 | GO:0006107: oxaloacetate metabolic process | 5.20E-04 |
| 41 | GO:0010731: protein glutathionylation | 5.20E-04 |
| 42 | GO:0042631: cellular response to water deprivation | 5.26E-04 |
| 43 | GO:0032259: methylation | 5.29E-04 |
| 44 | GO:0015986: ATP synthesis coupled proton transport | 6.07E-04 |
| 45 | GO:0010021: amylopectin biosynthetic process | 6.90E-04 |
| 46 | GO:0009765: photosynthesis, light harvesting | 6.90E-04 |
| 47 | GO:0006109: regulation of carbohydrate metabolic process | 6.90E-04 |
| 48 | GO:0045727: positive regulation of translation | 6.90E-04 |
| 49 | GO:0015713: phosphoglycerate transport | 6.90E-04 |
| 50 | GO:0006546: glycine catabolic process | 6.90E-04 |
| 51 | GO:0006734: NADH metabolic process | 6.90E-04 |
| 52 | GO:0006656: phosphatidylcholine biosynthetic process | 8.73E-04 |
| 53 | GO:0043097: pyrimidine nucleoside salvage | 8.73E-04 |
| 54 | GO:0009643: photosynthetic acclimation | 1.07E-03 |
| 55 | GO:0042549: photosystem II stabilization | 1.07E-03 |
| 56 | GO:0006206: pyrimidine nucleobase metabolic process | 1.07E-03 |
| 57 | GO:0010190: cytochrome b6f complex assembly | 1.07E-03 |
| 58 | GO:0015995: chlorophyll biosynthetic process | 1.15E-03 |
| 59 | GO:0018298: protein-chromophore linkage | 1.27E-03 |
| 60 | GO:0009854: oxidative photosynthetic carbon pathway | 1.27E-03 |
| 61 | GO:0009409: response to cold | 1.46E-03 |
| 62 | GO:0010161: red light signaling pathway | 1.49E-03 |
| 63 | GO:1900057: positive regulation of leaf senescence | 1.49E-03 |
| 64 | GO:0008610: lipid biosynthetic process | 1.72E-03 |
| 65 | GO:0005978: glycogen biosynthetic process | 1.72E-03 |
| 66 | GO:0009642: response to light intensity | 1.72E-03 |
| 67 | GO:0032544: plastid translation | 1.96E-03 |
| 68 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 1.96E-03 |
| 69 | GO:0006002: fructose 6-phosphate metabolic process | 1.96E-03 |
| 70 | GO:0071482: cellular response to light stimulus | 1.96E-03 |
| 71 | GO:0009657: plastid organization | 1.96E-03 |
| 72 | GO:0010114: response to red light | 2.05E-03 |
| 73 | GO:0006098: pentose-phosphate shunt | 2.21E-03 |
| 74 | GO:0010206: photosystem II repair | 2.21E-03 |
| 75 | GO:0090333: regulation of stomatal closure | 2.21E-03 |
| 76 | GO:0010205: photoinhibition | 2.48E-03 |
| 77 | GO:0010267: production of ta-siRNAs involved in RNA interference | 2.48E-03 |
| 78 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.48E-03 |
| 79 | GO:0009585: red, far-red light phototransduction | 2.75E-03 |
| 80 | GO:0000272: polysaccharide catabolic process | 3.03E-03 |
| 81 | GO:0009698: phenylpropanoid metabolic process | 3.03E-03 |
| 82 | GO:0019684: photosynthesis, light reaction | 3.03E-03 |
| 83 | GO:0043085: positive regulation of catalytic activity | 3.03E-03 |
| 84 | GO:0006096: glycolytic process | 3.24E-03 |
| 85 | GO:0016925: protein sumoylation | 3.32E-03 |
| 86 | GO:0002213: defense response to insect | 3.32E-03 |
| 87 | GO:0006108: malate metabolic process | 3.63E-03 |
| 88 | GO:0006006: glucose metabolic process | 3.63E-03 |
| 89 | GO:0018107: peptidyl-threonine phosphorylation | 3.63E-03 |
| 90 | GO:0005986: sucrose biosynthetic process | 3.63E-03 |
| 91 | GO:0019762: glucosinolate catabolic process | 4.58E-03 |
| 92 | GO:0006406: mRNA export from nucleus | 4.92E-03 |
| 93 | GO:0000027: ribosomal large subunit assembly | 4.92E-03 |
| 94 | GO:0009695: jasmonic acid biosynthetic process | 5.27E-03 |
| 95 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.27E-03 |
| 96 | GO:0061077: chaperone-mediated protein folding | 5.62E-03 |
| 97 | GO:0031408: oxylipin biosynthetic process | 5.62E-03 |
| 98 | GO:0010017: red or far-red light signaling pathway | 5.98E-03 |
| 99 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 5.98E-03 |
| 100 | GO:0009693: ethylene biosynthetic process | 6.35E-03 |
| 101 | GO:0007623: circadian rhythm | 6.70E-03 |
| 102 | GO:0031047: gene silencing by RNA | 9.60E-03 |
| 103 | GO:0051607: defense response to virus | 1.14E-02 |
| 104 | GO:0010027: thylakoid membrane organization | 1.19E-02 |
| 105 | GO:0042128: nitrate assimilation | 1.28E-02 |
| 106 | GO:0010411: xyloglucan metabolic process | 1.33E-02 |
| 107 | GO:0010218: response to far red light | 1.54E-02 |
| 108 | GO:0006499: N-terminal protein myristoylation | 1.54E-02 |
| 109 | GO:0009637: response to blue light | 1.69E-02 |
| 110 | GO:0009853: photorespiration | 1.69E-02 |
| 111 | GO:0016051: carbohydrate biosynthetic process | 1.69E-02 |
| 112 | GO:0006099: tricarboxylic acid cycle | 1.75E-02 |
| 113 | GO:0006631: fatty acid metabolic process | 1.91E-02 |
| 114 | GO:0006397: mRNA processing | 1.99E-02 |
| 115 | GO:0009744: response to sucrose | 2.03E-02 |
| 116 | GO:0042546: cell wall biogenesis | 2.09E-02 |
| 117 | GO:0009636: response to toxic substance | 2.20E-02 |
| 118 | GO:0006364: rRNA processing | 2.51E-02 |
| 119 | GO:0006417: regulation of translation | 2.70E-02 |
| 120 | GO:0006810: transport | 2.74E-02 |
| 121 | GO:0043086: negative regulation of catalytic activity | 2.82E-02 |
| 122 | GO:0005975: carbohydrate metabolic process | 2.85E-02 |
| 123 | GO:0046686: response to cadmium ion | 2.94E-02 |
| 124 | GO:0006396: RNA processing | 3.29E-02 |
| 125 | GO:0018105: peptidyl-serine phosphorylation | 3.29E-02 |
| 126 | GO:0009416: response to light stimulus | 3.38E-02 |
| 127 | GO:0009611: response to wounding | 3.46E-02 |
| 128 | GO:0009058: biosynthetic process | 3.93E-02 |
| 129 | GO:0006633: fatty acid biosynthetic process | 4.45E-02 |
| 130 | GO:0006412: translation | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 2 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 3 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 4 | GO:0004768: stearoyl-CoA 9-desaturase activity | 0.00E+00 |
| 5 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 6 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 7 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 0.00E+00 |
| 8 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 9 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 10 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 11 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 12 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 13 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 14 | GO:0047134: protein-disulfide reductase activity | 1.97E-05 |
| 15 | GO:0004791: thioredoxin-disulfide reductase activity | 2.86E-05 |
| 16 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.39E-05 |
| 17 | GO:0019843: rRNA binding | 5.61E-05 |
| 18 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 6.27E-05 |
| 19 | GO:0008746: NAD(P)+ transhydrogenase activity | 9.14E-05 |
| 20 | GO:0035671: enone reductase activity | 9.14E-05 |
| 21 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 9.14E-05 |
| 22 | GO:0031072: heat shock protein binding | 1.77E-04 |
| 23 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 2.16E-04 |
| 24 | GO:0010297: heteropolysaccharide binding | 2.16E-04 |
| 25 | GO:0004047: aminomethyltransferase activity | 2.16E-04 |
| 26 | GO:0033201: alpha-1,4-glucan synthase activity | 2.16E-04 |
| 27 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.16E-04 |
| 28 | GO:0008479: queuine tRNA-ribosyltransferase activity | 2.16E-04 |
| 29 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 2.16E-04 |
| 30 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.16E-04 |
| 31 | GO:0018708: thiol S-methyltransferase activity | 2.16E-04 |
| 32 | GO:0071917: triose-phosphate transmembrane transporter activity | 3.61E-04 |
| 33 | GO:0019948: SUMO activating enzyme activity | 3.61E-04 |
| 34 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.61E-04 |
| 35 | GO:0004373: glycogen (starch) synthase activity | 3.61E-04 |
| 36 | GO:0015035: protein disulfide oxidoreductase activity | 4.75E-04 |
| 37 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 5.20E-04 |
| 38 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 5.66E-04 |
| 39 | GO:0015120: phosphoglycerate transmembrane transporter activity | 6.90E-04 |
| 40 | GO:0043495: protein anchor | 6.90E-04 |
| 41 | GO:0009011: starch synthase activity | 6.90E-04 |
| 42 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 6.90E-04 |
| 43 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 8.73E-04 |
| 44 | GO:0016168: chlorophyll binding | 1.04E-03 |
| 45 | GO:0016615: malate dehydrogenase activity | 1.07E-03 |
| 46 | GO:0004332: fructose-bisphosphate aldolase activity | 1.07E-03 |
| 47 | GO:0042578: phosphoric ester hydrolase activity | 1.07E-03 |
| 48 | GO:0030060: L-malate dehydrogenase activity | 1.27E-03 |
| 49 | GO:0004849: uridine kinase activity | 1.27E-03 |
| 50 | GO:0008168: methyltransferase activity | 1.48E-03 |
| 51 | GO:0019899: enzyme binding | 1.49E-03 |
| 52 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 2.21E-03 |
| 53 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.21E-03 |
| 54 | GO:0051287: NAD binding | 2.47E-03 |
| 55 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 2.48E-03 |
| 56 | GO:0030234: enzyme regulator activity | 2.75E-03 |
| 57 | GO:0008047: enzyme activator activity | 2.75E-03 |
| 58 | GO:0051082: unfolded protein binding | 3.89E-03 |
| 59 | GO:0008266: poly(U) RNA binding | 3.93E-03 |
| 60 | GO:0031409: pigment binding | 4.58E-03 |
| 61 | GO:0004857: enzyme inhibitor activity | 4.92E-03 |
| 62 | GO:0005528: FK506 binding | 4.92E-03 |
| 63 | GO:0016491: oxidoreductase activity | 5.90E-03 |
| 64 | GO:0022891: substrate-specific transmembrane transporter activity | 6.35E-03 |
| 65 | GO:0003727: single-stranded RNA binding | 6.73E-03 |
| 66 | GO:0050662: coenzyme binding | 8.32E-03 |
| 67 | GO:0042802: identical protein binding | 8.51E-03 |
| 68 | GO:0005515: protein binding | 8.62E-03 |
| 69 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 9.16E-03 |
| 70 | GO:0008483: transaminase activity | 1.09E-02 |
| 71 | GO:0003735: structural constituent of ribosome | 1.10E-02 |
| 72 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.33E-02 |
| 73 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.38E-02 |
| 74 | GO:0004222: metalloendopeptidase activity | 1.54E-02 |
| 75 | GO:0003746: translation elongation factor activity | 1.69E-02 |
| 76 | GO:0050661: NADP binding | 1.86E-02 |
| 77 | GO:0004364: glutathione transferase activity | 1.97E-02 |
| 78 | GO:0004185: serine-type carboxypeptidase activity | 2.03E-02 |
| 79 | GO:0043621: protein self-association | 2.14E-02 |
| 80 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.26E-02 |
| 81 | GO:0016874: ligase activity | 3.09E-02 |
| 82 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.85E-02 |
| 83 | GO:0004252: serine-type endopeptidase activity | 4.07E-02 |
| 84 | GO:0015297: antiporter activity | 4.60E-02 |