co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G53800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006223: uracil salvage	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:0035998: 7,8-dihydroneopterin 3'-triphosphate biosynthetic process	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0005996: monosaccharide metabolic process	0.00E+00
7	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0034337: RNA folding	0.00E+00
10	GO:0002184: cytoplasmic translational termination	0.00E+00
11	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
12	GO:0015979: photosynthesis	7.04E-12
13	GO:0015995: chlorophyll biosynthetic process	2.16E-11
14	GO:0032544: plastid translation	4.23E-09
15	GO:0019252: starch biosynthetic process	1.01E-07
16	GO:0009658: chloroplast organization	6.25E-07
17	GO:0009735: response to cytokinin	9.18E-07
18	GO:0010021: amylopectin biosynthetic process	1.02E-06
19	GO:0010207: photosystem II assembly	5.30E-06
20	GO:0006729: tetrahydrobiopterin biosynthetic process	7.70E-06
21	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.70E-06
22	GO:0006000: fructose metabolic process	2.66E-05
23	GO:0006783: heme biosynthetic process	3.45E-05
24	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.79E-05
25	GO:0006412: translation	6.81E-05
26	GO:0009773: photosynthetic electron transport in photosystem I	7.46E-05
27	GO:0018119: peptidyl-cysteine S-nitrosylation	7.46E-05
28	GO:0055114: oxidation-reduction process	8.69E-05
29	GO:0045727: positive regulation of translation	1.02E-04
30	GO:0006109: regulation of carbohydrate metabolic process	1.02E-04
31	GO:0006094: gluconeogenesis	1.13E-04
32	GO:0043097: pyrimidine nucleoside salvage	1.58E-04
33	GO:0006206: pyrimidine nucleobase metabolic process	2.25E-04
34	GO:0042254: ribosome biogenesis	3.31E-04
35	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	4.15E-04
36	GO:0043489: RNA stabilization	4.15E-04
37	GO:0015671: oxygen transport	4.15E-04
38	GO:1904966: positive regulation of vitamin E biosynthetic process	4.15E-04
39	GO:0043953: protein transport by the Tat complex	4.15E-04
40	GO:0000481: maturation of 5S rRNA	4.15E-04
41	GO:1904964: positive regulation of phytol biosynthetic process	4.15E-04
42	GO:0065002: intracellular protein transmembrane transport	4.15E-04
43	GO:0051775: response to redox state	4.15E-04
44	GO:0043087: regulation of GTPase activity	4.15E-04
45	GO:0071277: cellular response to calcium ion	4.15E-04
46	GO:0009704: de-etiolation	4.90E-04
47	GO:0048564: photosystem I assembly	4.90E-04
48	GO:0006002: fructose 6-phosphate metabolic process	5.98E-04
49	GO:0071482: cellular response to light stimulus	5.98E-04
50	GO:0006364: rRNA processing	7.77E-04
51	GO:0006779: porphyrin-containing compound biosynthetic process	8.44E-04
52	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.99E-04
53	GO:0000256: allantoin catabolic process	8.99E-04
54	GO:0051262: protein tetramerization	8.99E-04
55	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.99E-04
56	GO:0006782: protoporphyrinogen IX biosynthetic process	9.82E-04
57	GO:0043085: positive regulation of catalytic activity	1.13E-03
58	GO:0006518: peptide metabolic process	1.46E-03
59	GO:0010136: ureide catabolic process	1.46E-03
60	GO:0034051: negative regulation of plant-type hypersensitive response	1.46E-03
61	GO:0044375: regulation of peroxisome size	1.46E-03
62	GO:0005977: glycogen metabolic process	1.46E-03
63	GO:0005986: sucrose biosynthetic process	1.47E-03
64	GO:0018298: protein-chromophore linkage	1.59E-03
65	GO:0019253: reductive pentose-phosphate cycle	1.65E-03
66	GO:0033014: tetrapyrrole biosynthetic process	2.11E-03
67	GO:0006241: CTP biosynthetic process	2.11E-03
68	GO:0010731: protein glutathionylation	2.11E-03
69	GO:1901332: negative regulation of lateral root development	2.11E-03
70	GO:0006145: purine nucleobase catabolic process	2.11E-03
71	GO:0006165: nucleoside diphosphate phosphorylation	2.11E-03
72	GO:0006228: UTP biosynthetic process	2.11E-03
73	GO:0006986: response to unfolded protein	2.11E-03
74	GO:2001141: regulation of RNA biosynthetic process	2.11E-03
75	GO:0010371: regulation of gibberellin biosynthetic process	2.11E-03
76	GO:0051085: chaperone mediated protein folding requiring cofactor	2.11E-03
77	GO:0009152: purine ribonucleotide biosynthetic process	2.11E-03
78	GO:0046653: tetrahydrofolate metabolic process	2.11E-03
79	GO:0006107: oxaloacetate metabolic process	2.11E-03
80	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.11E-03
81	GO:0009853: photorespiration	2.16E-03
82	GO:0034599: cellular response to oxidative stress	2.28E-03
83	GO:0009768: photosynthesis, light harvesting in photosystem I	2.53E-03
84	GO:0006183: GTP biosynthetic process	2.84E-03
85	GO:0006536: glutamate metabolic process	2.84E-03
86	GO:0010600: regulation of auxin biosynthetic process	2.84E-03
87	GO:0006734: NADH metabolic process	2.84E-03
88	GO:0044206: UMP salvage	2.84E-03
89	GO:0019748: secondary metabolic process	3.04E-03
90	GO:0006564: L-serine biosynthetic process	3.63E-03
91	GO:0006656: phosphatidylcholine biosynthetic process	3.63E-03
92	GO:0009107: lipoate biosynthetic process	3.63E-03
93	GO:0000304: response to singlet oxygen	3.63E-03
94	GO:0005975: carbohydrate metabolic process	4.22E-03
95	GO:0042631: cellular response to water deprivation	4.23E-03
96	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.49E-03
97	GO:0006014: D-ribose metabolic process	4.49E-03
98	GO:0042549: photosystem II stabilization	4.49E-03
99	GO:0006655: phosphatidylglycerol biosynthetic process	4.49E-03
100	GO:0006662: glycerol ether metabolic process	4.56E-03
101	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.42E-03
102	GO:0046654: tetrahydrofolate biosynthetic process	5.42E-03
103	GO:1901259: chloroplast rRNA processing	5.42E-03
104	GO:0009854: oxidative photosynthetic carbon pathway	5.42E-03
105	GO:0032502: developmental process	6.02E-03
106	GO:1900057: positive regulation of leaf senescence	6.41E-03
107	GO:0009645: response to low light intensity stimulus	6.41E-03
108	GO:0010161: red light signaling pathway	6.41E-03
109	GO:0009772: photosynthetic electron transport in photosystem II	6.41E-03
110	GO:0010928: regulation of auxin mediated signaling pathway	7.45E-03
111	GO:0005978: glycogen biosynthetic process	7.45E-03
112	GO:0009642: response to light intensity	7.45E-03
113	GO:0032508: DNA duplex unwinding	7.45E-03
114	GO:0042255: ribosome assembly	7.45E-03
115	GO:0006353: DNA-templated transcription, termination	7.45E-03
116	GO:0016559: peroxisome fission	7.45E-03
117	GO:0010027: thylakoid membrane organization	8.17E-03
118	GO:0006526: arginine biosynthetic process	8.55E-03
119	GO:0009657: plastid organization	8.55E-03
120	GO:0009409: response to cold	8.95E-03
121	GO:0090333: regulation of stomatal closure	9.71E-03
122	GO:0019432: triglyceride biosynthetic process	9.71E-03
123	GO:0006754: ATP biosynthetic process	9.71E-03
124	GO:0009058: biosynthetic process	9.77E-03
125	GO:0006810: transport	1.06E-02
126	GO:0009817: defense response to fungus, incompatible interaction	1.07E-02
127	GO:0005982: starch metabolic process	1.09E-02
128	GO:0006633: fatty acid biosynthetic process	1.22E-02
129	GO:0006535: cysteine biosynthetic process from serine	1.22E-02
130	GO:0007568: aging	1.24E-02
131	GO:0042742: defense response to bacterium	1.34E-02
132	GO:0006352: DNA-templated transcription, initiation	1.35E-02
133	GO:0008285: negative regulation of cell proliferation	1.35E-02
134	GO:0000272: polysaccharide catabolic process	1.35E-02
135	GO:0009750: response to fructose	1.35E-02
136	GO:0019684: photosynthesis, light reaction	1.35E-02
137	GO:0016051: carbohydrate biosynthetic process	1.36E-02
138	GO:0005983: starch catabolic process	1.49E-02
139	GO:0016024: CDP-diacylglycerol biosynthetic process	1.49E-02
140	GO:0006631: fatty acid metabolic process	1.62E-02
141	GO:0006108: malate metabolic process	1.63E-02
142	GO:0006807: nitrogen compound metabolic process	1.63E-02
143	GO:0018107: peptidyl-threonine phosphorylation	1.63E-02
144	GO:0009767: photosynthetic electron transport chain	1.63E-02
145	GO:0010114: response to red light	1.75E-02
146	GO:0009266: response to temperature stimulus	1.77E-02
147	GO:0007031: peroxisome organization	1.92E-02
148	GO:0006636: unsaturated fatty acid biosynthetic process	2.08E-02
149	GO:0019762: glucosinolate catabolic process	2.08E-02
150	GO:0000027: ribosomal large subunit assembly	2.24E-02
151	GO:0019344: cysteine biosynthetic process	2.24E-02
152	GO:0009116: nucleoside metabolic process	2.24E-02
153	GO:0009585: red, far-red light phototransduction	2.37E-02
154	GO:0007017: microtubule-based process	2.40E-02
155	GO:0010073: meristem maintenance	2.40E-02
156	GO:0031408: oxylipin biosynthetic process	2.57E-02
157	GO:0048511: rhythmic process	2.57E-02
158	GO:0010431: seed maturation	2.57E-02
159	GO:0061077: chaperone-mediated protein folding	2.57E-02
160	GO:0016226: iron-sulfur cluster assembly	2.74E-02
161	GO:0010017: red or far-red light signaling pathway	2.74E-02
162	GO:0035428: hexose transmembrane transport	2.74E-02
163	GO:0080092: regulation of pollen tube growth	2.74E-02
164	GO:0043086: negative regulation of catalytic activity	2.80E-02
165	GO:0006096: glycolytic process	2.80E-02
166	GO:0009411: response to UV	2.91E-02
167	GO:0009625: response to insect	2.91E-02
168	GO:0010227: floral organ abscission	2.91E-02
169	GO:0042335: cuticle development	3.46E-02
170	GO:0006606: protein import into nucleus	3.46E-02
171	GO:0006396: RNA processing	3.47E-02
172	GO:0044550: secondary metabolite biosynthetic process	3.48E-02
173	GO:0006520: cellular amino acid metabolic process	3.65E-02
174	GO:0046323: glucose import	3.65E-02
175	GO:0015986: ATP synthesis coupled proton transport	3.85E-02
176	GO:0045454: cell redox homeostasis	3.91E-02
177	GO:0009791: post-embryonic development	4.04E-02
178	GO:0000302: response to reactive oxygen species	4.24E-02
179	GO:1901657: glycosyl compound metabolic process	4.65E-02
180	GO:0042744: hydrogen peroxide catabolic process	4.78E-02
181	GO:0032259: methylation	4.80E-02
182	GO:0009567: double fertilization forming a zygote and endosperm	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
2	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
3	GO:0090711: FMN hydrolase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
6	GO:0008974: phosphoribulokinase activity	0.00E+00
7	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0004567: beta-mannosidase activity	0.00E+00
10	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
11	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
12	GO:0008465: glycerate dehydrogenase activity	0.00E+00
13	GO:0046408: chlorophyll synthetase activity	0.00E+00
14	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
15	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
16	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
17	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
18	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
19	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
20	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
21	GO:0003934: GTP cyclohydrolase I activity	0.00E+00
22	GO:0019843: rRNA binding	8.79E-14
23	GO:0016851: magnesium chelatase activity	3.53E-07
24	GO:0003735: structural constituent of ribosome	1.36E-06
25	GO:0008266: poly(U) RNA binding	5.30E-06
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.70E-06
27	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.48E-05
28	GO:0009011: starch synthase activity	1.02E-04
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.02E-04
30	GO:0005528: FK506 binding	2.18E-04
31	GO:0004849: uridine kinase activity	3.03E-04
32	GO:0004856: xylulokinase activity	4.15E-04
33	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.15E-04
34	GO:0005080: protein kinase C binding	4.15E-04
35	GO:0004325: ferrochelatase activity	4.15E-04
36	GO:0008746: NAD(P)+ transhydrogenase activity	4.15E-04
37	GO:0004853: uroporphyrinogen decarboxylase activity	4.15E-04
38	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	4.15E-04
39	GO:0005344: oxygen transporter activity	4.15E-04
40	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	4.15E-04
41	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.15E-04
42	GO:0005227: calcium activated cation channel activity	4.15E-04
43	GO:0080079: cellobiose glucosidase activity	4.15E-04
44	GO:0016776: phosphotransferase activity, phosphate group as acceptor	4.15E-04
45	GO:0048038: quinone binding	7.18E-04
46	GO:0016630: protochlorophyllide reductase activity	8.99E-04
47	GO:0019156: isoamylase activity	8.99E-04
48	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.99E-04
49	GO:0000234: phosphoethanolamine N-methyltransferase activity	8.99E-04
50	GO:0050017: L-3-cyanoalanine synthase activity	8.99E-04
51	GO:0008883: glutamyl-tRNA reductase activity	8.99E-04
52	GO:0042389: omega-3 fatty acid desaturase activity	8.99E-04
53	GO:0080041: ADP-ribose pyrophosphohydrolase activity	8.99E-04
54	GO:0010297: heteropolysaccharide binding	8.99E-04
55	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.99E-04
56	GO:0004617: phosphoglycerate dehydrogenase activity	8.99E-04
57	GO:0033201: alpha-1,4-glucan synthase activity	8.99E-04
58	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.99E-04
59	GO:0008047: enzyme activator activity	9.82E-04
60	GO:0016168: chlorophyll binding	1.22E-03
61	GO:0005504: fatty acid binding	1.46E-03
62	GO:0043169: cation binding	1.46E-03
63	GO:0004373: glycogen (starch) synthase activity	1.46E-03
64	GO:0016992: lipoate synthase activity	1.46E-03
65	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.46E-03
66	GO:0004751: ribose-5-phosphate isomerase activity	1.46E-03
67	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.46E-03
68	GO:0008864: formyltetrahydrofolate deformylase activity	1.46E-03
69	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.46E-03
70	GO:0031409: pigment binding	2.06E-03
71	GO:0004550: nucleoside diphosphate kinase activity	2.11E-03
72	GO:0043023: ribosomal large subunit binding	2.11E-03
73	GO:0008097: 5S rRNA binding	2.11E-03
74	GO:0004351: glutamate decarboxylase activity	2.11E-03
75	GO:0003746: translation elongation factor activity	2.16E-03
76	GO:0004857: enzyme inhibitor activity	2.29E-03
77	GO:0045430: chalcone isomerase activity	2.84E-03
78	GO:0016987: sigma factor activity	2.84E-03
79	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.84E-03
80	GO:0043495: protein anchor	2.84E-03
81	GO:0001053: plastid sigma factor activity	2.84E-03
82	GO:0004845: uracil phosphoribosyltransferase activity	2.84E-03
83	GO:0008453: alanine-glyoxylate transaminase activity	2.84E-03
84	GO:0003727: single-stranded RNA binding	3.61E-03
85	GO:0003959: NADPH dehydrogenase activity	3.63E-03
86	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.63E-03
87	GO:0008374: O-acyltransferase activity	3.63E-03
88	GO:0016787: hydrolase activity	3.66E-03
89	GO:0051287: NAD binding	3.81E-03
90	GO:0047134: protein-disulfide reductase activity	3.91E-03
91	GO:0004556: alpha-amylase activity	4.49E-03
92	GO:0004130: cytochrome-c peroxidase activity	4.49E-03
93	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.49E-03
94	GO:0042578: phosphoric ester hydrolase activity	4.49E-03
95	GO:0016615: malate dehydrogenase activity	4.49E-03
96	GO:0004332: fructose-bisphosphate aldolase activity	4.49E-03
97	GO:0050662: coenzyme binding	4.90E-03
98	GO:0004791: thioredoxin-disulfide reductase activity	4.90E-03
99	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.42E-03
100	GO:0004747: ribokinase activity	5.42E-03
101	GO:0030060: L-malate dehydrogenase activity	5.42E-03
102	GO:0005261: cation channel activity	5.42E-03
103	GO:0004124: cysteine synthase activity	5.42E-03
104	GO:0051920: peroxiredoxin activity	5.42E-03
105	GO:0004601: peroxidase activity	5.95E-03
106	GO:0019899: enzyme binding	6.41E-03
107	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.42E-03
108	GO:0004033: aldo-keto reductase (NADP) activity	7.45E-03
109	GO:0008865: fructokinase activity	7.45E-03
110	GO:0016209: antioxidant activity	7.45E-03
111	GO:0016491: oxidoreductase activity	8.43E-03
112	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.55E-03
113	GO:0008135: translation factor activity, RNA binding	8.55E-03
114	GO:0005525: GTP binding	8.99E-03
115	GO:0071949: FAD binding	9.71E-03
116	GO:0030955: potassium ion binding	1.09E-02
117	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.09E-02
118	GO:0004743: pyruvate kinase activity	1.09E-02
119	GO:0004222: metalloendopeptidase activity	1.18E-02
120	GO:0030234: enzyme regulator activity	1.22E-02
121	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.35E-02
122	GO:0004565: beta-galactosidase activity	1.63E-02
123	GO:0031072: heat shock protein binding	1.63E-02
124	GO:0004185: serine-type carboxypeptidase activity	1.75E-02
125	GO:0042802: identical protein binding	1.87E-02
126	GO:0043621: protein self-association	1.90E-02
127	GO:0035091: phosphatidylinositol binding	1.90E-02
128	GO:0051537: 2 iron, 2 sulfur cluster binding	1.90E-02
129	GO:0051536: iron-sulfur cluster binding	2.24E-02
130	GO:0051087: chaperone binding	2.40E-02
131	GO:0003729: mRNA binding	2.85E-02
132	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.89E-02
133	GO:0022891: substrate-specific transmembrane transporter activity	2.91E-02
134	GO:0005509: calcium ion binding	3.23E-02
135	GO:0051082: unfolded protein binding	3.37E-02
136	GO:0046872: metal ion binding	3.38E-02
137	GO:0015035: protein disulfide oxidoreductase activity	3.47E-02
138	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.65E-02
139	GO:0008080: N-acetyltransferase activity	3.65E-02
140	GO:0005355: glucose transmembrane transporter activity	3.85E-02
141	GO:0003824: catalytic activity	4.29E-02
142	GO:0004252: serine-type endopeptidase activity	4.67E-02
143	GO:0030170: pyridoxal phosphate binding	4.67E-02