Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53700

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
3GO:0009606: tropism0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0035884: arabinan biosynthetic process0.00E+00
6GO:0045184: establishment of protein localization0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0090615: mitochondrial mRNA processing0.00E+00
10GO:0042793: transcription from plastid promoter1.91E-10
11GO:0009451: RNA modification7.07E-10
12GO:0009658: chloroplast organization1.05E-06
13GO:0009657: plastid organization3.07E-05
14GO:0016998: cell wall macromolecule catabolic process3.35E-04
15GO:1901259: chloroplast rRNA processing3.43E-04
16GO:0006955: immune response4.42E-04
17GO:0048437: floral organ development4.42E-04
18GO:0034757: negative regulation of iron ion transport4.51E-04
19GO:0032204: regulation of telomere maintenance4.51E-04
20GO:0042659: regulation of cell fate specification4.51E-04
21GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.51E-04
22GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.51E-04
23GO:0090558: plant epidermis development4.51E-04
24GO:0043247: telomere maintenance in response to DNA damage4.51E-04
25GO:0010063: positive regulation of trichoblast fate specification4.51E-04
26GO:0033044: regulation of chromosome organization4.51E-04
27GO:1903866: palisade mesophyll development4.51E-04
28GO:0010480: microsporocyte differentiation4.51E-04
29GO:0035987: endodermal cell differentiation4.51E-04
30GO:0043609: regulation of carbon utilization4.51E-04
31GO:0006436: tryptophanyl-tRNA aminoacylation4.51E-04
32GO:0007389: pattern specification process6.72E-04
33GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.84E-04
34GO:0010583: response to cyclopentenone9.08E-04
35GO:1900865: chloroplast RNA modification9.48E-04
36GO:2000123: positive regulation of stomatal complex development9.73E-04
37GO:0006420: arginyl-tRNA aminoacylation9.73E-04
38GO:0010254: nectary development9.73E-04
39GO:0060359: response to ammonium ion9.73E-04
40GO:0048255: mRNA stabilization9.73E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process9.73E-04
42GO:0010271: regulation of chlorophyll catabolic process9.73E-04
43GO:0010434: bract formation9.73E-04
44GO:0010541: acropetal auxin transport9.73E-04
45GO:0018026: peptidyl-lysine monomethylation9.73E-04
46GO:0009662: etioplast organization9.73E-04
47GO:0048439: flower morphogenesis9.73E-04
48GO:0009220: pyrimidine ribonucleotide biosynthetic process9.73E-04
49GO:1904143: positive regulation of carotenoid biosynthetic process9.73E-04
50GO:0080009: mRNA methylation9.73E-04
51GO:0009875: pollen-pistil interaction9.73E-04
52GO:0009416: response to light stimulus1.30E-03
53GO:0010027: thylakoid membrane organization1.33E-03
54GO:0045037: protein import into chloroplast stroma1.45E-03
55GO:0010582: floral meristem determinacy1.45E-03
56GO:0045910: negative regulation of DNA recombination1.58E-03
57GO:0090708: specification of plant organ axis polarity1.58E-03
58GO:0080117: secondary growth1.58E-03
59GO:0006000: fructose metabolic process1.58E-03
60GO:0090391: granum assembly1.58E-03
61GO:0006518: peptide metabolic process1.58E-03
62GO:0042780: tRNA 3'-end processing1.58E-03
63GO:0001578: microtubule bundle formation1.58E-03
64GO:0043157: response to cation stress1.58E-03
65GO:0009954: proximal/distal pattern formation1.58E-03
66GO:0032504: multicellular organism reproduction1.58E-03
67GO:0009432: SOS response1.58E-03
68GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.58E-03
69GO:0010411: xyloglucan metabolic process1.63E-03
70GO:0010239: chloroplast mRNA processing2.29E-03
71GO:0010306: rhamnogalacturonan II biosynthetic process2.29E-03
72GO:0019048: modulation by virus of host morphology or physiology2.29E-03
73GO:0046739: transport of virus in multicellular host2.29E-03
74GO:0031048: chromatin silencing by small RNA2.29E-03
75GO:0051289: protein homotetramerization2.29E-03
76GO:0016556: mRNA modification2.29E-03
77GO:0007004: telomere maintenance via telomerase2.29E-03
78GO:0000730: DNA recombinase assembly2.29E-03
79GO:0010371: regulation of gibberellin biosynthetic process2.29E-03
80GO:1902476: chloride transmembrane transport2.29E-03
81GO:0010071: root meristem specification2.29E-03
82GO:0051513: regulation of monopolar cell growth2.29E-03
83GO:0009793: embryo development ending in seed dormancy2.40E-03
84GO:0009734: auxin-activated signaling pathway2.74E-03
85GO:1900864: mitochondrial RNA modification3.08E-03
86GO:0051322: anaphase3.08E-03
87GO:0030104: water homeostasis3.08E-03
88GO:2000038: regulation of stomatal complex development3.08E-03
89GO:0006221: pyrimidine nucleotide biosynthetic process3.08E-03
90GO:0006021: inositol biosynthetic process3.08E-03
91GO:0051567: histone H3-K9 methylation3.08E-03
92GO:0044205: 'de novo' UMP biosynthetic process3.08E-03
93GO:0006346: methylation-dependent chromatin silencing3.08E-03
94GO:0006479: protein methylation3.08E-03
95GO:0006306: DNA methylation3.14E-03
96GO:0040008: regulation of growth3.43E-03
97GO:0042546: cell wall biogenesis3.67E-03
98GO:0010158: abaxial cell fate specification3.95E-03
99GO:0010375: stomatal complex patterning3.95E-03
100GO:0048497: maintenance of floral organ identity3.95E-03
101GO:0006282: regulation of DNA repair3.95E-03
102GO:0009959: negative gravitropism4.89E-03
103GO:0009913: epidermal cell differentiation4.89E-03
104GO:0006655: phosphatidylglycerol biosynthetic process4.89E-03
105GO:0016554: cytidine to uridine editing4.89E-03
106GO:0048831: regulation of shoot system development4.89E-03
107GO:0010315: auxin efflux4.89E-03
108GO:0016458: gene silencing4.89E-03
109GO:0009228: thiamine biosynthetic process4.89E-03
110GO:0010304: PSII associated light-harvesting complex II catabolic process4.89E-03
111GO:0009736: cytokinin-activated signaling pathway5.11E-03
112GO:0048868: pollen tube development5.15E-03
113GO:2000067: regulation of root morphogenesis5.90E-03
114GO:0009955: adaxial/abaxial pattern specification5.90E-03
115GO:0009082: branched-chain amino acid biosynthetic process5.90E-03
116GO:0009942: longitudinal axis specification5.90E-03
117GO:0048509: regulation of meristem development5.90E-03
118GO:0009099: valine biosynthetic process5.90E-03
119GO:0030488: tRNA methylation5.90E-03
120GO:0009851: auxin biosynthetic process5.95E-03
121GO:0080156: mitochondrial mRNA modification6.37E-03
122GO:0009630: gravitropism6.81E-03
123GO:0042148: strand invasion6.98E-03
124GO:0006821: chloride transport6.98E-03
125GO:0010050: vegetative phase change6.98E-03
126GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.98E-03
127GO:0010044: response to aluminum ion6.98E-03
128GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.98E-03
129GO:0009553: embryo sac development7.72E-03
130GO:0010252: auxin homeostasis7.73E-03
131GO:0009828: plant-type cell wall loosening7.73E-03
132GO:0048564: photosystem I assembly8.12E-03
133GO:0001522: pseudouridine synthesis8.12E-03
134GO:0009642: response to light intensity8.12E-03
135GO:0009850: auxin metabolic process8.12E-03
136GO:0030162: regulation of proteolysis8.12E-03
137GO:0048766: root hair initiation8.12E-03
138GO:0055075: potassium ion homeostasis8.12E-03
139GO:0000105: histidine biosynthetic process8.12E-03
140GO:0006002: fructose 6-phosphate metabolic process9.33E-03
141GO:0019430: removal of superoxide radicals9.33E-03
142GO:0010212: response to ionizing radiation9.33E-03
143GO:0010497: plasmodesmata-mediated intercellular transport9.33E-03
144GO:0009097: isoleucine biosynthetic process9.33E-03
145GO:0032544: plastid translation9.33E-03
146GO:0006303: double-strand break repair via nonhomologous end joining9.33E-03
147GO:0006974: cellular response to DNA damage stimulus1.03E-02
148GO:0010332: response to gamma radiation1.06E-02
149GO:0000373: Group II intron splicing1.06E-02
150GO:0000902: cell morphogenesis1.06E-02
151GO:0042761: very long-chain fatty acid biosynthetic process1.19E-02
152GO:2000280: regulation of root development1.19E-02
153GO:0048481: plant ovule development1.21E-02
154GO:0006508: proteolysis1.23E-02
155GO:0000160: phosphorelay signal transduction system1.27E-02
156GO:0009790: embryo development1.30E-02
157GO:0006259: DNA metabolic process1.33E-02
158GO:0031627: telomeric loop formation1.33E-02
159GO:0006535: cysteine biosynthetic process from serine1.33E-02
160GO:0009688: abscisic acid biosynthetic process1.33E-02
161GO:0030422: production of siRNA involved in RNA interference1.33E-02
162GO:0006298: mismatch repair1.33E-02
163GO:0006265: DNA topological change1.47E-02
164GO:0009089: lysine biosynthetic process via diaminopimelate1.47E-02
165GO:0048229: gametophyte development1.47E-02
166GO:0006790: sulfur compound metabolic process1.62E-02
167GO:0006312: mitotic recombination1.62E-02
168GO:0016024: CDP-diacylglycerol biosynthetic process1.62E-02
169GO:0009691: cytokinin biosynthetic process1.78E-02
170GO:0010075: regulation of meristem growth1.78E-02
171GO:0010207: photosystem II assembly1.94E-02
172GO:0010020: chloroplast fission1.94E-02
173GO:0010540: basipetal auxin transport1.94E-02
174GO:0009934: regulation of meristem structural organization1.94E-02
175GO:0009926: auxin polar transport1.99E-02
176GO:0080188: RNA-directed DNA methylation2.10E-02
177GO:0046854: phosphatidylinositol phosphorylation2.10E-02
178GO:0006071: glycerol metabolic process2.27E-02
179GO:0006833: water transport2.27E-02
180GO:0019344: cysteine biosynthetic process2.44E-02
181GO:0009116: nucleoside metabolic process2.44E-02
182GO:0009944: polarity specification of adaxial/abaxial axis2.44E-02
183GO:0000027: ribosomal large subunit assembly2.44E-02
184GO:0009664: plant-type cell wall organization2.50E-02
185GO:0051302: regulation of cell division2.62E-02
186GO:0019953: sexual reproduction2.62E-02
187GO:0006418: tRNA aminoacylation for protein translation2.62E-02
188GO:0010073: meristem maintenance2.62E-02
189GO:0010431: seed maturation2.81E-02
190GO:0016226: iron-sulfur cluster assembly2.99E-02
191GO:0080092: regulation of pollen tube growth2.99E-02
192GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.18E-02
193GO:0010082: regulation of root meristem growth3.18E-02
194GO:0071215: cellular response to abscisic acid stimulus3.18E-02
195GO:0010227: floral organ abscission3.18E-02
196GO:0048316: seed development3.27E-02
197GO:0042127: regulation of cell proliferation3.38E-02
198GO:0070417: cellular response to cold3.58E-02
199GO:0048653: anther development3.78E-02
200GO:0000226: microtubule cytoskeleton organization3.78E-02
201GO:0008033: tRNA processing3.78E-02
202GO:0010087: phloem or xylem histogenesis3.78E-02
203GO:0009958: positive gravitropism3.99E-02
204GO:0006662: glycerol ether metabolic process3.99E-02
205GO:0010305: leaf vascular tissue pattern formation3.99E-02
206GO:0006342: chromatin silencing3.99E-02
207GO:0009741: response to brassinosteroid3.99E-02
208GO:0007059: chromosome segregation4.20E-02
209GO:0009646: response to absence of light4.20E-02
210GO:0048544: recognition of pollen4.20E-02
211GO:0007018: microtubule-based movement4.20E-02
212GO:0006814: sodium ion transport4.20E-02
213GO:0010183: pollen tube guidance4.41E-02
214GO:0048825: cotyledon development4.41E-02
215GO:0008654: phospholipid biosynthetic process4.41E-02
216GO:0031047: gene silencing by RNA4.85E-02
217GO:0019761: glucosinolate biosynthetic process4.85E-02
218GO:0032502: developmental process4.85E-02
RankGO TermAdjusted P value
1GO:0052834: inositol monophosphate phosphatase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
6GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0070009: serine-type aminopeptidase activity0.00E+00
9GO:0004519: endonuclease activity1.15E-11
10GO:0003723: RNA binding1.82E-07
11GO:0004222: metalloendopeptidase activity3.21E-05
12GO:0008237: metallopeptidase activity1.40E-04
13GO:0004176: ATP-dependent peptidase activity3.35E-04
14GO:0008836: diaminopimelate decarboxylase activity4.51E-04
15GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.51E-04
16GO:0016274: protein-arginine N-methyltransferase activity4.51E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.51E-04
18GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.51E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.51E-04
20GO:0052381: tRNA dimethylallyltransferase activity4.51E-04
21GO:0004160: dihydroxy-acid dehydratase activity4.51E-04
22GO:0004830: tryptophan-tRNA ligase activity4.51E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity4.51E-04
24GO:0004016: adenylate cyclase activity4.51E-04
25GO:0019843: rRNA binding4.57E-04
26GO:0016762: xyloglucan:xyloglucosyl transferase activity8.37E-04
27GO:0009672: auxin:proton symporter activity9.48E-04
28GO:0016887: ATPase activity9.69E-04
29GO:0004047: aminomethyltransferase activity9.73E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity9.73E-04
31GO:0008934: inositol monophosphate 1-phosphatase activity9.73E-04
32GO:0052833: inositol monophosphate 4-phosphatase activity9.73E-04
33GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity9.73E-04
34GO:0009884: cytokinin receptor activity9.73E-04
35GO:0004814: arginine-tRNA ligase activity9.73E-04
36GO:0046524: sucrose-phosphate synthase activity1.58E-03
37GO:0017150: tRNA dihydrouridine synthase activity1.58E-03
38GO:0042781: 3'-tRNA processing endoribonuclease activity1.58E-03
39GO:0016805: dipeptidase activity1.58E-03
40GO:0005034: osmosensor activity1.58E-03
41GO:0016798: hydrolase activity, acting on glycosyl bonds1.63E-03
42GO:0009982: pseudouridine synthase activity1.65E-03
43GO:0010329: auxin efflux transmembrane transporter activity1.65E-03
44GO:0008508: bile acid:sodium symporter activity2.29E-03
45GO:0001872: (1->3)-beta-D-glucan binding2.29E-03
46GO:0009041: uridylate kinase activity2.29E-03
47GO:0035197: siRNA binding2.29E-03
48GO:0016836: hydro-lyase activity3.08E-03
49GO:0004031: aldehyde oxidase activity3.08E-03
50GO:0050302: indole-3-acetaldehyde oxidase activity3.08E-03
51GO:0005253: anion channel activity3.08E-03
52GO:0016279: protein-lysine N-methyltransferase activity3.08E-03
53GO:0005275: amine transmembrane transporter activity3.95E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor3.95E-03
55GO:0005524: ATP binding4.16E-03
56GO:0030983: mismatched DNA binding4.89E-03
57GO:0004605: phosphatidate cytidylyltransferase activity4.89E-03
58GO:0004784: superoxide dismutase activity4.89E-03
59GO:0005247: voltage-gated chloride channel activity4.89E-03
60GO:2001070: starch binding4.89E-03
61GO:0003777: microtubule motor activity5.82E-03
62GO:0004124: cysteine synthase activity5.90E-03
63GO:0008195: phosphatidate phosphatase activity5.90E-03
64GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.90E-03
65GO:0019900: kinase binding5.90E-03
66GO:0019901: protein kinase binding5.95E-03
67GO:0000150: recombinase activity6.98E-03
68GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.45E-03
69GO:0000400: four-way junction DNA binding8.12E-03
70GO:0004520: endodeoxyribonuclease activity8.12E-03
71GO:0008173: RNA methyltransferase activity9.33E-03
72GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.33E-03
73GO:0008889: glycerophosphodiester phosphodiesterase activity1.06E-02
74GO:0004673: protein histidine kinase activity1.33E-02
75GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.40E-02
76GO:0003691: double-stranded telomeric DNA binding1.47E-02
77GO:0005089: Rho guanyl-nucleotide exchange factor activity1.47E-02
78GO:0008559: xenobiotic-transporting ATPase activity1.47E-02
79GO:0003993: acid phosphatase activity1.61E-02
80GO:0004521: endoribonuclease activity1.62E-02
81GO:0051539: 4 iron, 4 sulfur cluster binding1.75E-02
82GO:0031072: heat shock protein binding1.78E-02
83GO:0000155: phosphorelay sensor kinase activity1.78E-02
84GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.94E-02
85GO:0043424: protein histidine kinase binding2.62E-02
86GO:0005345: purine nucleobase transmembrane transporter activity2.62E-02
87GO:0008168: methyltransferase activity2.67E-02
88GO:0003690: double-stranded DNA binding2.77E-02
89GO:0008094: DNA-dependent ATPase activity2.81E-02
90GO:0033612: receptor serine/threonine kinase binding2.81E-02
91GO:0008408: 3'-5' exonuclease activity2.81E-02
92GO:0016788: hydrolase activity, acting on ester bonds2.86E-02
93GO:0003682: chromatin binding3.00E-02
94GO:0050660: flavin adenine dinucleotide binding3.35E-02
95GO:0004812: aminoacyl-tRNA ligase activity3.58E-02
96GO:0047134: protein-disulfide reductase activity3.58E-02
97GO:0001085: RNA polymerase II transcription factor binding3.99E-02
98GO:0004527: exonuclease activity3.99E-02
99GO:0003713: transcription coactivator activity3.99E-02
100GO:0008026: ATP-dependent helicase activity4.04E-02
101GO:0052689: carboxylic ester hydrolase activity4.13E-02
102GO:0004386: helicase activity4.15E-02
103GO:0004791: thioredoxin-disulfide reductase activity4.20E-02
<
Gene type



Gene DE type