Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006114: glycerol biosynthetic process0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006429: leucyl-tRNA aminoacylation0.00E+00
5GO:0009249: protein lipoylation0.00E+00
6GO:1905421: regulation of plant organ morphogenesis0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
9GO:0017038: protein import0.00E+00
10GO:0046460: neutral lipid biosynthetic process0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0044249: cellular biosynthetic process0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0031116: positive regulation of microtubule polymerization0.00E+00
15GO:0042820: vitamin B6 catabolic process0.00E+00
16GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
17GO:0042817: pyridoxal metabolic process0.00E+00
18GO:0042407: cristae formation0.00E+00
19GO:0042821: pyridoxal biosynthetic process0.00E+00
20GO:0009106: lipoate metabolic process0.00E+00
21GO:0090042: tubulin deacetylation0.00E+00
22GO:0009793: embryo development ending in seed dormancy2.70E-05
23GO:0009657: plastid organization2.99E-05
24GO:1900865: chloroplast RNA modification5.39E-05
25GO:0009658: chloroplast organization7.29E-05
26GO:0045038: protein import into chloroplast thylakoid membrane1.76E-04
27GO:0042793: transcription from plastid promoter2.51E-04
28GO:0042026: protein refolding3.37E-04
29GO:1902458: positive regulation of stomatal opening4.45E-04
30GO:0006747: FAD biosynthetic process4.45E-04
31GO:0000023: maltose metabolic process4.45E-04
32GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.45E-04
33GO:0006419: alanyl-tRNA aminoacylation4.45E-04
34GO:0000476: maturation of 4.5S rRNA4.45E-04
35GO:0009443: pyridoxal 5'-phosphate salvage4.45E-04
36GO:0000967: rRNA 5'-end processing4.45E-04
37GO:2000025: regulation of leaf formation4.45E-04
38GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.45E-04
39GO:0015671: oxygen transport4.45E-04
40GO:0005980: glycogen catabolic process4.45E-04
41GO:0042547: cell wall modification involved in multidimensional cell growth4.45E-04
42GO:1901135: carbohydrate derivative metabolic process4.45E-04
43GO:0042371: vitamin K biosynthetic process4.45E-04
44GO:0019478: D-amino acid catabolic process4.45E-04
45GO:0006353: DNA-templated transcription, termination5.41E-04
46GO:0009790: embryo development5.84E-04
47GO:0019432: triglyceride biosynthetic process7.90E-04
48GO:0001682: tRNA 5'-leader removal9.61E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process9.61E-04
50GO:0034470: ncRNA processing9.61E-04
51GO:0009629: response to gravity9.61E-04
52GO:0010198: synergid death9.61E-04
53GO:0006739: NADP metabolic process9.61E-04
54GO:1900871: chloroplast mRNA modification9.61E-04
55GO:0007154: cell communication9.61E-04
56GO:0018026: peptidyl-lysine monomethylation9.61E-04
57GO:0009220: pyrimidine ribonucleotide biosynthetic process9.61E-04
58GO:0006423: cysteinyl-tRNA aminoacylation9.61E-04
59GO:0006435: threonyl-tRNA aminoacylation9.61E-04
60GO:0006782: protoporphyrinogen IX biosynthetic process1.08E-03
61GO:0006415: translational termination1.25E-03
62GO:0005983: starch catabolic process1.43E-03
63GO:0045037: protein import into chloroplast stroma1.43E-03
64GO:0009627: systemic acquired resistance1.49E-03
65GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.57E-03
66GO:0005977: glycogen metabolic process1.57E-03
67GO:0033591: response to L-ascorbic acid1.57E-03
68GO:0048281: inflorescence morphogenesis1.57E-03
69GO:0006954: inflammatory response1.57E-03
70GO:0015940: pantothenate biosynthetic process1.57E-03
71GO:0001578: microtubule bundle formation1.57E-03
72GO:0045493: xylan catabolic process1.57E-03
73GO:0015995: chlorophyll biosynthetic process1.60E-03
74GO:2000012: regulation of auxin polar transport1.62E-03
75GO:0006508: proteolysis2.01E-03
76GO:0071732: cellular response to nitric oxide2.05E-03
77GO:0090351: seedling development2.05E-03
78GO:0016556: mRNA modification2.27E-03
79GO:0009102: biotin biosynthetic process2.27E-03
80GO:0051085: chaperone mediated protein folding requiring cofactor2.27E-03
81GO:0010239: chloroplast mRNA processing2.27E-03
82GO:0008615: pyridoxine biosynthetic process2.27E-03
83GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.27E-03
84GO:0006164: purine nucleotide biosynthetic process2.27E-03
85GO:0010148: transpiration2.27E-03
86GO:0043572: plastid fission2.27E-03
87GO:0010109: regulation of photosynthesis3.05E-03
88GO:0051781: positive regulation of cell division3.05E-03
89GO:0042274: ribosomal small subunit biogenesis3.05E-03
90GO:0051322: anaphase3.05E-03
91GO:0009765: photosynthesis, light harvesting3.05E-03
92GO:0022622: root system development3.05E-03
93GO:0071483: cellular response to blue light3.05E-03
94GO:0006734: NADH metabolic process3.05E-03
95GO:0044205: 'de novo' UMP biosynthetic process3.05E-03
96GO:0007020: microtubule nucleation3.05E-03
97GO:0010021: amylopectin biosynthetic process3.05E-03
98GO:0061077: chaperone-mediated protein folding3.08E-03
99GO:0006730: one-carbon metabolic process3.37E-03
100GO:0007005: mitochondrion organization3.37E-03
101GO:0071369: cellular response to ethylene stimulus3.68E-03
102GO:0009107: lipoate biosynthetic process3.90E-03
103GO:0016123: xanthophyll biosynthetic process3.90E-03
104GO:0046785: microtubule polymerization3.90E-03
105GO:0046907: intracellular transport3.90E-03
106GO:0032543: mitochondrial translation3.90E-03
107GO:0010236: plastoquinone biosynthetic process3.90E-03
108GO:0016120: carotene biosynthetic process3.90E-03
109GO:0016117: carotenoid biosynthetic process4.34E-03
110GO:0010190: cytochrome b6f complex assembly4.83E-03
111GO:0016554: cytidine to uridine editing4.83E-03
112GO:0032973: amino acid export4.83E-03
113GO:0050665: hydrogen peroxide biosynthetic process4.83E-03
114GO:0005975: carbohydrate metabolic process5.40E-03
115GO:0009648: photoperiodism5.83E-03
116GO:0019509: L-methionine salvage from methylthioadenosine5.83E-03
117GO:0042372: phylloquinone biosynthetic process5.83E-03
118GO:0006458: 'de novo' protein folding5.83E-03
119GO:0017148: negative regulation of translation5.83E-03
120GO:0034389: lipid particle organization5.83E-03
121GO:0030488: tRNA methylation5.83E-03
122GO:1901259: chloroplast rRNA processing5.83E-03
123GO:0009854: oxidative photosynthetic carbon pathway5.83E-03
124GO:0010103: stomatal complex morphogenesis6.89E-03
125GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.89E-03
126GO:0032880: regulation of protein localization6.89E-03
127GO:0048528: post-embryonic root development6.89E-03
128GO:0009772: photosynthetic electron transport in photosystem II6.89E-03
129GO:0043090: amino acid import6.89E-03
130GO:0070370: cellular heat acclimation6.89E-03
131GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.89E-03
132GO:0010196: nonphotochemical quenching6.89E-03
133GO:0006400: tRNA modification6.89E-03
134GO:0071281: cellular response to iron ion7.13E-03
135GO:0070413: trehalose metabolism in response to stress8.02E-03
136GO:0000105: histidine biosynthetic process8.02E-03
137GO:0009231: riboflavin biosynthetic process8.02E-03
138GO:0052543: callose deposition in cell wall8.02E-03
139GO:0006605: protein targeting8.02E-03
140GO:2000070: regulation of response to water deprivation8.02E-03
141GO:0000910: cytokinesis8.56E-03
142GO:0010027: thylakoid membrane organization9.07E-03
143GO:0017004: cytochrome complex assembly9.21E-03
144GO:0009932: cell tip growth9.21E-03
145GO:0001558: regulation of cell growth9.21E-03
146GO:0071482: cellular response to light stimulus9.21E-03
147GO:0022900: electron transport chain9.21E-03
148GO:0010204: defense response signaling pathway, resistance gene-independent9.21E-03
149GO:0032544: plastid translation9.21E-03
150GO:0009821: alkaloid biosynthetic process1.05E-02
151GO:0010206: photosystem II repair1.05E-02
152GO:0080144: amino acid homeostasis1.05E-02
153GO:0006098: pentose-phosphate shunt1.05E-02
154GO:0006783: heme biosynthetic process1.05E-02
155GO:0009409: response to cold1.12E-02
156GO:0043067: regulation of programmed cell death1.18E-02
157GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
158GO:0015979: photosynthesis1.18E-02
159GO:0045036: protein targeting to chloroplast1.31E-02
160GO:0006949: syncytium formation1.31E-02
161GO:0006259: DNA metabolic process1.31E-02
162GO:0006413: translational initiation1.44E-02
163GO:0010015: root morphogenesis1.46E-02
164GO:0019684: photosynthesis, light reaction1.46E-02
165GO:0006265: DNA topological change1.46E-02
166GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
167GO:0009073: aromatic amino acid family biosynthetic process1.46E-02
168GO:0006352: DNA-templated transcription, initiation1.46E-02
169GO:0045087: innate immune response1.51E-02
170GO:0009451: RNA modification1.62E-02
171GO:0009725: response to hormone1.75E-02
172GO:0006094: gluconeogenesis1.75E-02
173GO:0009767: photosynthetic electron transport chain1.75E-02
174GO:0009266: response to temperature stimulus1.91E-02
175GO:0010207: photosystem II assembly1.91E-02
176GO:0010020: chloroplast fission1.91E-02
177GO:0009965: leaf morphogenesis2.19E-02
178GO:0006071: glycerol metabolic process2.24E-02
179GO:0000162: tryptophan biosynthetic process2.24E-02
180GO:0005992: trehalose biosynthetic process2.41E-02
181GO:0009116: nucleoside metabolic process2.41E-02
182GO:0009944: polarity specification of adaxial/abaxial axis2.41E-02
183GO:0007010: cytoskeleton organization2.41E-02
184GO:0009664: plant-type cell wall organization2.45E-02
185GO:0051302: regulation of cell division2.59E-02
186GO:0016575: histone deacetylation2.59E-02
187GO:0006418: tRNA aminoacylation for protein translation2.59E-02
188GO:0043622: cortical microtubule organization2.59E-02
189GO:0006364: rRNA processing2.63E-02
190GO:0048511: rhythmic process2.77E-02
191GO:0031348: negative regulation of defense response2.95E-02
192GO:0019748: secondary metabolic process2.95E-02
193GO:0009814: defense response, incompatible interaction2.95E-02
194GO:0016226: iron-sulfur cluster assembly2.95E-02
195GO:0035428: hexose transmembrane transport2.95E-02
196GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.14E-02
197GO:0001944: vasculature development3.14E-02
198GO:0009306: protein secretion3.33E-02
199GO:0048366: leaf development3.35E-02
200GO:0006810: transport3.38E-02
201GO:0051028: mRNA transport3.53E-02
202GO:0008284: positive regulation of cell proliferation3.53E-02
203GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.53E-02
204GO:0006606: protein import into nucleus3.73E-02
205GO:0048653: anther development3.73E-02
206GO:0008033: tRNA processing3.73E-02
207GO:0048868: pollen tube development3.94E-02
208GO:0046323: glucose import3.94E-02
209GO:0009958: positive gravitropism3.94E-02
210GO:0006662: glycerol ether metabolic process3.94E-02
211GO:0010197: polar nucleus fusion3.94E-02
212GO:0042752: regulation of circadian rhythm4.14E-02
213GO:0007059: chromosome segregation4.14E-02
214GO:0009646: response to absence of light4.14E-02
215GO:0019252: starch biosynthetic process4.36E-02
216GO:0000302: response to reactive oxygen species4.57E-02
217GO:0002229: defense response to oomycetes4.57E-02
218GO:0009630: gravitropism4.79E-02
RankGO TermAdjusted P value
1GO:0015267: channel activity0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0004076: biotin synthase activity0.00E+00
6GO:0003937: IMP cyclohydrolase activity0.00E+00
7GO:0043136: glycerol-3-phosphatase activity0.00E+00
8GO:0000121: glycerol-1-phosphatase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
11GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
12GO:0005363: maltose transmembrane transporter activity0.00E+00
13GO:0050613: delta14-sterol reductase activity0.00E+00
14GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
15GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
16GO:0043014: alpha-tubulin binding0.00E+00
17GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
18GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
19GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
20GO:0051721: protein phosphatase 2A binding0.00E+00
21GO:0004823: leucine-tRNA ligase activity0.00E+00
22GO:0042903: tubulin deacetylase activity0.00E+00
23GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
24GO:0045435: lycopene epsilon cyclase activity0.00E+00
25GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.79E-06
26GO:0070402: NADPH binding3.02E-05
27GO:0016149: translation release factor activity, codon specific6.54E-05
28GO:0016851: magnesium chelatase activity6.54E-05
29GO:0008237: metallopeptidase activity1.35E-04
30GO:0016773: phosphotransferase activity, alcohol group as acceptor1.76E-04
31GO:0005528: FK506 binding2.51E-04
32GO:0004176: ATP-dependent peptidase activity3.27E-04
33GO:0005344: oxygen transporter activity4.45E-04
34GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.45E-04
35GO:0005227: calcium activated cation channel activity4.45E-04
36GO:0004733: pyridoxamine-phosphate oxidase activity4.45E-04
37GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.45E-04
38GO:0004856: xylulokinase activity4.45E-04
39GO:0097367: carbohydrate derivative binding4.45E-04
40GO:0008184: glycogen phosphorylase activity4.45E-04
41GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.45E-04
42GO:0004645: phosphorylase activity4.45E-04
43GO:0019203: carbohydrate phosphatase activity4.45E-04
44GO:0050308: sugar-phosphatase activity4.45E-04
45GO:0004813: alanine-tRNA ligase activity4.45E-04
46GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.45E-04
47GO:0052857: NADPHX epimerase activity4.45E-04
48GO:0004853: uroporphyrinogen decarboxylase activity4.45E-04
49GO:0052856: NADHX epimerase activity4.45E-04
50GO:0003747: translation release factor activity7.90E-04
51GO:0009977: proton motive force dependent protein transmembrane transporter activity9.61E-04
52GO:0016415: octanoyltransferase activity9.61E-04
53GO:0004047: aminomethyltransferase activity9.61E-04
54GO:0004817: cysteine-tRNA ligase activity9.61E-04
55GO:0004829: threonine-tRNA ligase activity9.61E-04
56GO:0019156: isoamylase activity9.61E-04
57GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.61E-04
58GO:0003919: FMN adenylyltransferase activity9.61E-04
59GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity9.61E-04
60GO:0017118: lipoyltransferase activity9.61E-04
61GO:0044183: protein binding involved in protein folding1.25E-03
62GO:0052692: raffinose alpha-galactosidase activity1.57E-03
63GO:0015462: ATPase-coupled protein transmembrane transporter activity1.57E-03
64GO:0004180: carboxypeptidase activity1.57E-03
65GO:0003913: DNA photolyase activity1.57E-03
66GO:0002161: aminoacyl-tRNA editing activity1.57E-03
67GO:0004557: alpha-galactosidase activity1.57E-03
68GO:0016788: hydrolase activity, acting on ester bonds1.75E-03
69GO:0004222: metalloendopeptidase activity2.06E-03
70GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.27E-03
71GO:0001872: (1->3)-beta-D-glucan binding2.27E-03
72GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.27E-03
73GO:0019201: nucleotide kinase activity2.27E-03
74GO:0048487: beta-tubulin binding2.27E-03
75GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.27E-03
76GO:0016656: monodehydroascorbate reductase (NADH) activity2.27E-03
77GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.27E-03
78GO:0043023: ribosomal large subunit binding2.27E-03
79GO:0004659: prenyltransferase activity3.05E-03
80GO:0016279: protein-lysine N-methyltransferase activity3.05E-03
81GO:0001053: plastid sigma factor activity3.05E-03
82GO:0004045: aminoacyl-tRNA hydrolase activity3.05E-03
83GO:0009044: xylan 1,4-beta-xylosidase activity3.05E-03
84GO:0016987: sigma factor activity3.05E-03
85GO:0019199: transmembrane receptor protein kinase activity3.05E-03
86GO:0042277: peptide binding3.05E-03
87GO:0008891: glycolate oxidase activity3.05E-03
88GO:0046556: alpha-L-arabinofuranosidase activity3.05E-03
89GO:0003723: RNA binding3.07E-03
90GO:0030570: pectate lyase activity3.68E-03
91GO:0005525: GTP binding3.73E-03
92GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.90E-03
93GO:0004040: amidase activity3.90E-03
94GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.15E-03
95GO:2001070: starch binding4.83E-03
96GO:0080030: methyl indole-3-acetate esterase activity4.83E-03
97GO:0004332: fructose-bisphosphate aldolase activity4.83E-03
98GO:0004526: ribonuclease P activity4.83E-03
99GO:0004556: alpha-amylase activity4.83E-03
100GO:0016853: isomerase activity5.44E-03
101GO:0010181: FMN binding5.44E-03
102GO:0004519: endonuclease activity5.70E-03
103GO:0004017: adenylate kinase activity5.83E-03
104GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.83E-03
105GO:0004144: diacylglycerol O-acyltransferase activity5.83E-03
106GO:0009881: photoreceptor activity6.89E-03
107GO:0051082: unfolded protein binding7.83E-03
108GO:0005337: nucleoside transmembrane transporter activity8.02E-03
109GO:0008312: 7S RNA binding8.02E-03
110GO:0043022: ribosome binding8.02E-03
111GO:0004033: aldo-keto reductase (NADP) activity8.02E-03
112GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.21E-03
113GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.21E-03
114GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.05E-02
115GO:0008236: serine-type peptidase activity1.13E-02
116GO:0016844: strictosidine synthase activity1.18E-02
117GO:0004805: trehalose-phosphatase activity1.31E-02
118GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.38E-02
119GO:0000049: tRNA binding1.60E-02
120GO:0003924: GTPase activity1.74E-02
121GO:0031072: heat shock protein binding1.75E-02
122GO:0004565: beta-galactosidase activity1.75E-02
123GO:0008266: poly(U) RNA binding1.91E-02
124GO:0008083: growth factor activity1.91E-02
125GO:0003743: translation initiation factor activity1.92E-02
126GO:0004185: serine-type carboxypeptidase activity1.95E-02
127GO:0051537: 2 iron, 2 sulfur cluster binding2.11E-02
128GO:0043621: protein self-association2.11E-02
129GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.24E-02
130GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.24E-02
131GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.24E-02
132GO:0051536: iron-sulfur cluster binding2.41E-02
133GO:0004407: histone deacetylase activity2.41E-02
134GO:0015079: potassium ion transmembrane transporter activity2.59E-02
135GO:0022891: substrate-specific transmembrane transporter activity3.14E-02
136GO:0050660: flavin adenine dinucleotide binding3.27E-02
137GO:0003756: protein disulfide isomerase activity3.33E-02
138GO:0047134: protein-disulfide reductase activity3.53E-02
139GO:0004812: aminoacyl-tRNA ligase activity3.53E-02
140GO:0004791: thioredoxin-disulfide reductase activity4.14E-02
141GO:0005355: glucose transmembrane transporter activity4.14E-02
142GO:0004872: receptor activity4.36E-02
143GO:0019843: rRNA binding4.67E-02
144GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.79E-02
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Gene type



Gene DE type