GO Enrichment Analysis of Co-expressed Genes with
AT3G50440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 2 | GO:0031129: inductive cell-cell signaling | 0.00E+00 |
| 3 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 4 | GO:0071311: cellular response to acetate | 0.00E+00 |
| 5 | GO:0070979: protein K11-linked ubiquitination | 0.00E+00 |
| 6 | GO:0071260: cellular response to mechanical stimulus | 0.00E+00 |
| 7 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 8 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 9 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 10 | GO:1902265: abscisic acid homeostasis | 3.11E-04 |
| 11 | GO:0051418: microtubule nucleation by microtubule organizing center | 3.11E-04 |
| 12 | GO:0010482: regulation of epidermal cell division | 3.11E-04 |
| 13 | GO:0045488: pectin metabolic process | 3.11E-04 |
| 14 | GO:0034080: CENP-A containing nucleosome assembly | 3.11E-04 |
| 15 | GO:0090610: bundle sheath cell fate specification | 3.11E-04 |
| 16 | GO:0006177: GMP biosynthetic process | 3.11E-04 |
| 17 | GO:0010450: inflorescence meristem growth | 3.11E-04 |
| 18 | GO:0051171: regulation of nitrogen compound metabolic process | 3.11E-04 |
| 19 | GO:2000039: regulation of trichome morphogenesis | 6.81E-04 |
| 20 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 6.81E-04 |
| 21 | GO:0010115: regulation of abscisic acid biosynthetic process | 6.81E-04 |
| 22 | GO:1900871: chloroplast mRNA modification | 6.81E-04 |
| 23 | GO:0007154: cell communication | 6.81E-04 |
| 24 | GO:1900033: negative regulation of trichome patterning | 6.81E-04 |
| 25 | GO:0042814: monopolar cell growth | 6.81E-04 |
| 26 | GO:0033566: gamma-tubulin complex localization | 6.81E-04 |
| 27 | GO:0045604: regulation of epidermal cell differentiation | 1.10E-03 |
| 28 | GO:0006753: nucleoside phosphate metabolic process | 1.10E-03 |
| 29 | GO:0071230: cellular response to amino acid stimulus | 1.10E-03 |
| 30 | GO:0031145: anaphase-promoting complex-dependent catabolic process | 1.10E-03 |
| 31 | GO:0043693: monoterpene biosynthetic process | 1.10E-03 |
| 32 | GO:0009150: purine ribonucleotide metabolic process | 1.10E-03 |
| 33 | GO:0045165: cell fate commitment | 1.10E-03 |
| 34 | GO:0007052: mitotic spindle organization | 1.10E-03 |
| 35 | GO:0031022: nuclear migration along microfilament | 1.10E-03 |
| 36 | GO:0051127: positive regulation of actin nucleation | 1.10E-03 |
| 37 | GO:0010187: negative regulation of seed germination | 1.50E-03 |
| 38 | GO:0090307: mitotic spindle assembly | 1.58E-03 |
| 39 | GO:0006164: purine nucleotide biosynthetic process | 1.58E-03 |
| 40 | GO:0007623: circadian rhythm | 1.58E-03 |
| 41 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 1.58E-03 |
| 42 | GO:0010255: glucose mediated signaling pathway | 1.58E-03 |
| 43 | GO:0048530: fruit morphogenesis | 1.58E-03 |
| 44 | GO:0006168: adenine salvage | 1.58E-03 |
| 45 | GO:0034508: centromere complex assembly | 1.58E-03 |
| 46 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.58E-03 |
| 47 | GO:0009067: aspartate family amino acid biosynthetic process | 1.58E-03 |
| 48 | GO:0006166: purine ribonucleoside salvage | 1.58E-03 |
| 49 | GO:0030071: regulation of mitotic metaphase/anaphase transition | 1.58E-03 |
| 50 | GO:0051639: actin filament network formation | 1.58E-03 |
| 51 | GO:0022622: root system development | 2.12E-03 |
| 52 | GO:0009902: chloroplast relocation | 2.12E-03 |
| 53 | GO:0048629: trichome patterning | 2.12E-03 |
| 54 | GO:0051764: actin crosslink formation | 2.12E-03 |
| 55 | GO:0006544: glycine metabolic process | 2.71E-03 |
| 56 | GO:0046785: microtubule polymerization | 2.71E-03 |
| 57 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.71E-03 |
| 58 | GO:1902183: regulation of shoot apical meristem development | 2.71E-03 |
| 59 | GO:0044209: AMP salvage | 2.71E-03 |
| 60 | GO:0010158: abaxial cell fate specification | 2.71E-03 |
| 61 | GO:0032876: negative regulation of DNA endoreduplication | 2.71E-03 |
| 62 | GO:0000226: microtubule cytoskeleton organization | 2.76E-03 |
| 63 | GO:0010087: phloem or xylem histogenesis | 2.76E-03 |
| 64 | GO:0009958: positive gravitropism | 2.98E-03 |
| 65 | GO:0010182: sugar mediated signaling pathway | 2.98E-03 |
| 66 | GO:0000741: karyogamy | 3.35E-03 |
| 67 | GO:0009117: nucleotide metabolic process | 3.35E-03 |
| 68 | GO:0006561: proline biosynthetic process | 3.35E-03 |
| 69 | GO:0006563: L-serine metabolic process | 3.35E-03 |
| 70 | GO:0009959: negative gravitropism | 3.35E-03 |
| 71 | GO:0009740: gibberellic acid mediated signaling pathway | 3.68E-03 |
| 72 | GO:0010583: response to cyclopentenone | 3.92E-03 |
| 73 | GO:0042372: phylloquinone biosynthetic process | 4.03E-03 |
| 74 | GO:2000033: regulation of seed dormancy process | 4.03E-03 |
| 75 | GO:0009903: chloroplast avoidance movement | 4.03E-03 |
| 76 | GO:0009088: threonine biosynthetic process | 4.03E-03 |
| 77 | GO:0048444: floral organ morphogenesis | 4.03E-03 |
| 78 | GO:0080086: stamen filament development | 4.03E-03 |
| 79 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 4.03E-03 |
| 80 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.52E-03 |
| 81 | GO:0010196: nonphotochemical quenching | 4.76E-03 |
| 82 | GO:0050829: defense response to Gram-negative bacterium | 4.76E-03 |
| 83 | GO:0015937: coenzyme A biosynthetic process | 4.76E-03 |
| 84 | GO:0032880: regulation of protein localization | 4.76E-03 |
| 85 | GO:0010161: red light signaling pathway | 4.76E-03 |
| 86 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 5.53E-03 |
| 87 | GO:0033386: geranylgeranyl diphosphate biosynthetic process | 5.53E-03 |
| 88 | GO:0046620: regulation of organ growth | 5.53E-03 |
| 89 | GO:0010078: maintenance of root meristem identity | 5.53E-03 |
| 90 | GO:0009704: de-etiolation | 5.53E-03 |
| 91 | GO:0032875: regulation of DNA endoreduplication | 5.53E-03 |
| 92 | GO:0007155: cell adhesion | 5.53E-03 |
| 93 | GO:0010029: regulation of seed germination | 5.62E-03 |
| 94 | GO:0010100: negative regulation of photomorphogenesis | 6.33E-03 |
| 95 | GO:0006997: nucleus organization | 6.33E-03 |
| 96 | GO:0043562: cellular response to nitrogen levels | 6.33E-03 |
| 97 | GO:0010093: specification of floral organ identity | 6.33E-03 |
| 98 | GO:0010099: regulation of photomorphogenesis | 6.33E-03 |
| 99 | GO:0045337: farnesyl diphosphate biosynthetic process | 7.19E-03 |
| 100 | GO:2000024: regulation of leaf development | 7.19E-03 |
| 101 | GO:0033384: geranyl diphosphate biosynthetic process | 7.19E-03 |
| 102 | GO:0006783: heme biosynthetic process | 7.19E-03 |
| 103 | GO:0000373: Group II intron splicing | 7.19E-03 |
| 104 | GO:0006189: 'de novo' IMP biosynthetic process | 7.19E-03 |
| 105 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.19E-03 |
| 106 | GO:0009733: response to auxin | 7.28E-03 |
| 107 | GO:0040008: regulation of growth | 7.51E-03 |
| 108 | GO:0048527: lateral root development | 8.02E-03 |
| 109 | GO:0010018: far-red light signaling pathway | 8.07E-03 |
| 110 | GO:1900865: chloroplast RNA modification | 8.07E-03 |
| 111 | GO:0010380: regulation of chlorophyll biosynthetic process | 8.07E-03 |
| 112 | GO:0071577: zinc II ion transmembrane transport | 8.07E-03 |
| 113 | GO:0009638: phototropism | 8.07E-03 |
| 114 | GO:0000387: spliceosomal snRNP assembly | 8.07E-03 |
| 115 | GO:0009299: mRNA transcription | 9.00E-03 |
| 116 | GO:0006535: cysteine biosynthetic process from serine | 9.00E-03 |
| 117 | GO:0009688: abscisic acid biosynthetic process | 9.00E-03 |
| 118 | GO:0010162: seed dormancy process | 9.00E-03 |
| 119 | GO:0009773: photosynthetic electron transport in photosystem I | 9.96E-03 |
| 120 | GO:0006415: translational termination | 9.96E-03 |
| 121 | GO:0009089: lysine biosynthetic process via diaminopimelate | 9.96E-03 |
| 122 | GO:0009750: response to fructose | 9.96E-03 |
| 123 | GO:0009684: indoleacetic acid biosynthetic process | 9.96E-03 |
| 124 | GO:0006816: calcium ion transport | 9.96E-03 |
| 125 | GO:0006790: sulfur compound metabolic process | 1.10E-02 |
| 126 | GO:0010588: cotyledon vascular tissue pattern formation | 1.20E-02 |
| 127 | GO:2000012: regulation of auxin polar transport | 1.20E-02 |
| 128 | GO:0030048: actin filament-based movement | 1.20E-02 |
| 129 | GO:0010628: positive regulation of gene expression | 1.20E-02 |
| 130 | GO:0006006: glucose metabolic process | 1.20E-02 |
| 131 | GO:0030036: actin cytoskeleton organization | 1.20E-02 |
| 132 | GO:0009725: response to hormone | 1.20E-02 |
| 133 | GO:0009933: meristem structural organization | 1.31E-02 |
| 134 | GO:0048467: gynoecium development | 1.31E-02 |
| 135 | GO:0009658: chloroplast organization | 1.39E-02 |
| 136 | GO:0010030: positive regulation of seed germination | 1.42E-02 |
| 137 | GO:0042753: positive regulation of circadian rhythm | 1.53E-02 |
| 138 | GO:0009833: plant-type primary cell wall biogenesis | 1.53E-02 |
| 139 | GO:0009585: red, far-red light phototransduction | 1.54E-02 |
| 140 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.65E-02 |
| 141 | GO:0007010: cytoskeleton organization | 1.65E-02 |
| 142 | GO:0051017: actin filament bundle assembly | 1.65E-02 |
| 143 | GO:0005992: trehalose biosynthetic process | 1.65E-02 |
| 144 | GO:0019344: cysteine biosynthetic process | 1.65E-02 |
| 145 | GO:0006874: cellular calcium ion homeostasis | 1.77E-02 |
| 146 | GO:0008299: isoprenoid biosynthetic process | 1.77E-02 |
| 147 | GO:0009416: response to light stimulus | 1.84E-02 |
| 148 | GO:0048367: shoot system development | 1.88E-02 |
| 149 | GO:0035428: hexose transmembrane transport | 2.01E-02 |
| 150 | GO:0009686: gibberellin biosynthetic process | 2.14E-02 |
| 151 | GO:0019722: calcium-mediated signaling | 2.27E-02 |
| 152 | GO:0010091: trichome branching | 2.27E-02 |
| 153 | GO:0010214: seed coat development | 2.27E-02 |
| 154 | GO:0070417: cellular response to cold | 2.41E-02 |
| 155 | GO:0008284: positive regulation of cell proliferation | 2.41E-02 |
| 156 | GO:0016117: carotenoid biosynthetic process | 2.41E-02 |
| 157 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.41E-02 |
| 158 | GO:0000271: polysaccharide biosynthetic process | 2.55E-02 |
| 159 | GO:0080022: primary root development | 2.55E-02 |
| 160 | GO:0034220: ion transmembrane transport | 2.55E-02 |
| 161 | GO:0042631: cellular response to water deprivation | 2.55E-02 |
| 162 | GO:0045489: pectin biosynthetic process | 2.68E-02 |
| 163 | GO:0008360: regulation of cell shape | 2.68E-02 |
| 164 | GO:0010154: fruit development | 2.68E-02 |
| 165 | GO:0010197: polar nucleus fusion | 2.68E-02 |
| 166 | GO:0046323: glucose import | 2.68E-02 |
| 167 | GO:0007018: microtubule-based movement | 2.83E-02 |
| 168 | GO:0006468: protein phosphorylation | 2.96E-02 |
| 169 | GO:0048825: cotyledon development | 2.97E-02 |
| 170 | GO:0009851: auxin biosynthetic process | 2.97E-02 |
| 171 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 3.12E-02 |
| 172 | GO:0016310: phosphorylation | 3.23E-02 |
| 173 | GO:0010090: trichome morphogenesis | 3.42E-02 |
| 174 | GO:0009639: response to red or far red light | 3.58E-02 |
| 175 | GO:0006464: cellular protein modification process | 3.58E-02 |
| 176 | GO:0045490: pectin catabolic process | 3.78E-02 |
| 177 | GO:0007166: cell surface receptor signaling pathway | 4.32E-02 |
| 178 | GO:0009627: systemic acquired resistance | 4.38E-02 |
| 179 | GO:0010468: regulation of gene expression | 4.50E-02 |
| 180 | GO:0015995: chlorophyll biosynthetic process | 4.55E-02 |
| 181 | GO:0048573: photoperiodism, flowering | 4.55E-02 |
| 182 | GO:0030244: cellulose biosynthetic process | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 2 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0015276: ligand-gated ion channel activity | 0.00E+00 |
| 5 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 6 | GO:0008066: glutamate receptor activity | 3.11E-04 |
| 7 | GO:0010945: CoA pyrophosphatase activity | 3.11E-04 |
| 8 | GO:0010313: phytochrome binding | 3.11E-04 |
| 9 | GO:0016972: thiol oxidase activity | 3.11E-04 |
| 10 | GO:0050139: nicotinate-N-glucosyltransferase activity | 3.11E-04 |
| 11 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 6.81E-04 |
| 12 | GO:0050017: L-3-cyanoalanine synthase activity | 6.81E-04 |
| 13 | GO:0017118: lipoyltransferase activity | 6.81E-04 |
| 14 | GO:0043425: bHLH transcription factor binding | 6.81E-04 |
| 15 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 6.81E-04 |
| 16 | GO:0003938: IMP dehydrogenase activity | 6.81E-04 |
| 17 | GO:0016971: flavin-linked sulfhydryl oxidase activity | 6.81E-04 |
| 18 | GO:0035529: NADH pyrophosphatase activity | 1.58E-03 |
| 19 | GO:0003999: adenine phosphoribosyltransferase activity | 1.58E-03 |
| 20 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.58E-03 |
| 21 | GO:0017172: cysteine dioxygenase activity | 1.58E-03 |
| 22 | GO:0047627: adenylylsulfatase activity | 1.58E-03 |
| 23 | GO:0004072: aspartate kinase activity | 1.58E-03 |
| 24 | GO:0008017: microtubule binding | 1.70E-03 |
| 25 | GO:0004176: ATP-dependent peptidase activity | 1.82E-03 |
| 26 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.12E-03 |
| 27 | GO:0043015: gamma-tubulin binding | 2.12E-03 |
| 28 | GO:0042802: identical protein binding | 2.29E-03 |
| 29 | GO:0004372: glycine hydroxymethyltransferase activity | 2.71E-03 |
| 30 | GO:0016846: carbon-sulfur lyase activity | 2.71E-03 |
| 31 | GO:0001085: RNA polymerase II transcription factor binding | 2.98E-03 |
| 32 | GO:0042578: phosphoric ester hydrolase activity | 3.35E-03 |
| 33 | GO:0000210: NAD+ diphosphatase activity | 3.35E-03 |
| 34 | GO:0016208: AMP binding | 3.35E-03 |
| 35 | GO:0016462: pyrophosphatase activity | 3.35E-03 |
| 36 | GO:0003730: mRNA 3'-UTR binding | 4.03E-03 |
| 37 | GO:0004124: cysteine synthase activity | 4.03E-03 |
| 38 | GO:0004311: farnesyltranstransferase activity | 5.53E-03 |
| 39 | GO:0003747: translation release factor activity | 7.19E-03 |
| 40 | GO:0004337: geranyltranstransferase activity | 7.19E-03 |
| 41 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 7.28E-03 |
| 42 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 8.02E-03 |
| 43 | GO:0004805: trehalose-phosphatase activity | 9.00E-03 |
| 44 | GO:0008794: arsenate reductase (glutaredoxin) activity | 9.96E-03 |
| 45 | GO:0004161: dimethylallyltranstransferase activity | 9.96E-03 |
| 46 | GO:0047372: acylglycerol lipase activity | 9.96E-03 |
| 47 | GO:0003725: double-stranded RNA binding | 1.20E-02 |
| 48 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.20E-02 |
| 49 | GO:0005262: calcium channel activity | 1.20E-02 |
| 50 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.23E-02 |
| 51 | GO:0046872: metal ion binding | 1.25E-02 |
| 52 | GO:0008083: growth factor activity | 1.31E-02 |
| 53 | GO:0008131: primary amine oxidase activity | 1.31E-02 |
| 54 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.31E-02 |
| 55 | GO:0005217: intracellular ligand-gated ion channel activity | 1.42E-02 |
| 56 | GO:0004970: ionotropic glutamate receptor activity | 1.42E-02 |
| 57 | GO:0005385: zinc ion transmembrane transporter activity | 1.65E-02 |
| 58 | GO:0005528: FK506 binding | 1.65E-02 |
| 59 | GO:0003777: microtubule motor activity | 1.70E-02 |
| 60 | GO:0008324: cation transmembrane transporter activity | 1.77E-02 |
| 61 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 2.01E-02 |
| 62 | GO:0030570: pectate lyase activity | 2.14E-02 |
| 63 | GO:0016760: cellulose synthase (UDP-forming) activity | 2.14E-02 |
| 64 | GO:0015035: protein disulfide oxidoreductase activity | 2.26E-02 |
| 65 | GO:0003727: single-stranded RNA binding | 2.27E-02 |
| 66 | GO:0005355: glucose transmembrane transporter activity | 2.83E-02 |
| 67 | GO:0019901: protein kinase binding | 2.97E-02 |
| 68 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 3.12E-02 |
| 69 | GO:0004672: protein kinase activity | 3.41E-02 |
| 70 | GO:0000156: phosphorelay response regulator activity | 3.42E-02 |
| 71 | GO:0051015: actin filament binding | 3.42E-02 |
| 72 | GO:0016759: cellulose synthase activity | 3.58E-02 |
| 73 | GO:0008237: metallopeptidase activity | 3.73E-02 |
| 74 | GO:0016597: amino acid binding | 3.89E-02 |
| 75 | GO:0030247: polysaccharide binding | 4.55E-02 |
| 76 | GO:0004721: phosphoprotein phosphatase activity | 4.55E-02 |