Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0008618: 7-methylguanosine metabolic process0.00E+00
2GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
3GO:0036265: RNA (guanine-N7)-methylation0.00E+00
4GO:0043488: regulation of mRNA stability0.00E+00
5GO:0090706: specification of plant organ position0.00E+00
6GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
7GO:0045176: apical protein localization0.00E+00
8GO:0007037: vacuolar phosphate transport0.00E+00
9GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0031129: inductive cell-cell signaling0.00E+00
12GO:0009902: chloroplast relocation3.60E-05
13GO:0051322: anaphase3.60E-05
14GO:0009658: chloroplast organization3.68E-05
15GO:0045038: protein import into chloroplast thylakoid membrane5.76E-05
16GO:1902183: regulation of shoot apical meristem development5.76E-05
17GO:0010158: abaxial cell fate specification5.76E-05
18GO:0006400: tRNA modification1.54E-04
19GO:0010154: fruit development1.66E-04
20GO:0007155: cell adhesion1.97E-04
21GO:0006659: phosphatidylserine biosynthetic process2.25E-04
22GO:0006264: mitochondrial DNA replication2.25E-04
23GO:0033259: plastid DNA replication2.25E-04
24GO:1902458: positive regulation of stomatal opening2.25E-04
25GO:0048508: embryonic meristem development2.25E-04
26GO:0006177: GMP biosynthetic process2.25E-04
27GO:0010450: inflorescence meristem growth2.25E-04
28GO:0010482: regulation of epidermal cell division2.25E-04
29GO:0009090: homoserine biosynthetic process2.25E-04
30GO:1902265: abscisic acid homeostasis2.25E-04
31GO:0071028: nuclear mRNA surveillance2.25E-04
32GO:0010206: photosystem II repair2.95E-04
33GO:2000024: regulation of leaf development2.95E-04
34GO:0009638: phototropism3.51E-04
35GO:1900865: chloroplast RNA modification3.51E-04
36GO:0007154: cell communication5.00E-04
37GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation5.00E-04
38GO:0042814: monopolar cell growth5.00E-04
39GO:0031125: rRNA 3'-end processing5.00E-04
40GO:1903426: regulation of reactive oxygen species biosynthetic process5.00E-04
41GO:0071051: polyadenylation-dependent snoRNA 3'-end processing5.00E-04
42GO:0034475: U4 snRNA 3'-end processing5.00E-04
43GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole5.00E-04
44GO:2000039: regulation of trichome morphogenesis5.00E-04
45GO:1900871: chloroplast mRNA modification5.00E-04
46GO:0009945: radial axis specification5.00E-04
47GO:0001578: microtubule bundle formation8.13E-04
48GO:0045493: xylan catabolic process8.13E-04
49GO:0045165: cell fate commitment8.13E-04
50GO:0016075: rRNA catabolic process8.13E-04
51GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'8.13E-04
52GO:0031022: nuclear migration along microfilament8.13E-04
53GO:0051127: positive regulation of actin nucleation8.13E-04
54GO:0019419: sulfate reduction8.13E-04
55GO:0045604: regulation of epidermal cell differentiation8.13E-04
56GO:0009944: polarity specification of adaxial/abaxial axis9.55E-04
57GO:0006168: adenine salvage1.16E-03
58GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.16E-03
59GO:0009067: aspartate family amino acid biosynthetic process1.16E-03
60GO:0006166: purine ribonucleoside salvage1.16E-03
61GO:0006164: purine nucleotide biosynthetic process1.16E-03
62GO:0048530: fruit morphogenesis1.16E-03
63GO:0009585: red, far-red light phototransduction1.39E-03
64GO:0009165: nucleotide biosynthetic process1.54E-03
65GO:2000306: positive regulation of photomorphogenesis1.54E-03
66GO:0015846: polyamine transport1.54E-03
67GO:0007020: microtubule nucleation1.54E-03
68GO:0006021: inositol biosynthetic process1.54E-03
69GO:0045489: pectin biosynthetic process1.87E-03
70GO:0044209: AMP salvage1.97E-03
71GO:0046785: microtubule polymerization1.97E-03
72GO:0048825: cotyledon development2.15E-03
73GO:0000741: karyogamy2.43E-03
74GO:0009117: nucleotide metabolic process2.43E-03
75GO:0009635: response to herbicide2.43E-03
76GO:0048827: phyllome development2.43E-03
77GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.43E-03
78GO:0016554: cytidine to uridine editing2.43E-03
79GO:0045962: positive regulation of development, heterochronic2.43E-03
80GO:0006139: nucleobase-containing compound metabolic process2.43E-03
81GO:0010583: response to cyclopentenone2.45E-03
82GO:0030163: protein catabolic process2.61E-03
83GO:0009942: longitudinal axis specification2.91E-03
84GO:0009099: valine biosynthetic process2.91E-03
85GO:0009903: chloroplast avoidance movement2.91E-03
86GO:0030488: tRNA methylation2.91E-03
87GO:0009088: threonine biosynthetic process2.91E-03
88GO:0048444: floral organ morphogenesis2.91E-03
89GO:0042372: phylloquinone biosynthetic process2.91E-03
90GO:0009082: branched-chain amino acid biosynthetic process2.91E-03
91GO:0000910: cytokinesis3.13E-03
92GO:0048528: post-embryonic root development3.43E-03
93GO:0009627: systemic acquired resistance3.69E-03
94GO:0006353: DNA-templated transcription, termination3.98E-03
95GO:0010078: maintenance of root meristem identity3.98E-03
96GO:0009704: de-etiolation3.98E-03
97GO:2000070: regulation of response to water deprivation3.98E-03
98GO:0052543: callose deposition in cell wall3.98E-03
99GO:0009787: regulation of abscisic acid-activated signaling pathway3.98E-03
100GO:0042255: ribosome assembly3.98E-03
101GO:0009097: isoleucine biosynthetic process4.56E-03
102GO:0043562: cellular response to nitrogen levels4.56E-03
103GO:0009808: lignin metabolic process4.56E-03
104GO:0010093: specification of floral organ identity4.56E-03
105GO:0006002: fructose 6-phosphate metabolic process4.56E-03
106GO:0006811: ion transport4.75E-03
107GO:0000373: Group II intron splicing5.16E-03
108GO:0006189: 'de novo' IMP biosynthetic process5.16E-03
109GO:0009637: response to blue light5.46E-03
110GO:0005982: starch metabolic process5.79E-03
111GO:0042761: very long-chain fatty acid biosynthetic process5.79E-03
112GO:0010018: far-red light signaling pathway5.79E-03
113GO:0009086: methionine biosynthetic process5.79E-03
114GO:0048354: mucilage biosynthetic process involved in seed coat development5.79E-03
115GO:0000103: sulfate assimilation6.45E-03
116GO:0006949: syncytium formation6.45E-03
117GO:0010192: mucilage biosynthetic process6.45E-03
118GO:0006631: fatty acid metabolic process6.49E-03
119GO:0006415: translational termination7.13E-03
120GO:1903507: negative regulation of nucleic acid-templated transcription7.13E-03
121GO:0009684: indoleacetic acid biosynthetic process7.13E-03
122GO:0009089: lysine biosynthetic process via diaminopimelate7.13E-03
123GO:0071555: cell wall organization7.80E-03
124GO:0010152: pollen maturation7.84E-03
125GO:0045037: protein import into chloroplast stroma7.84E-03
126GO:0009965: leaf morphogenesis7.91E-03
127GO:0010229: inflorescence development8.57E-03
128GO:0030036: actin cytoskeleton organization8.57E-03
129GO:0009767: photosynthetic electron transport chain8.57E-03
130GO:0010588: cotyledon vascular tissue pattern formation8.57E-03
131GO:0030048: actin filament-based movement8.57E-03
132GO:0010540: basipetal auxin transport9.33E-03
133GO:0048467: gynoecium development9.33E-03
134GO:0006541: glutamine metabolic process9.33E-03
135GO:0010020: chloroplast fission9.33E-03
136GO:0009933: meristem structural organization9.33E-03
137GO:0090351: seedling development1.01E-02
138GO:0010030: positive regulation of seed germination1.01E-02
139GO:0009225: nucleotide-sugar metabolic process1.01E-02
140GO:0009825: multidimensional cell growth1.01E-02
141GO:0019853: L-ascorbic acid biosynthetic process1.01E-02
142GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.04E-02
143GO:0006636: unsaturated fatty acid biosynthetic process1.09E-02
144GO:0000162: tryptophan biosynthetic process1.09E-02
145GO:0010025: wax biosynthetic process1.09E-02
146GO:0042753: positive regulation of circadian rhythm1.09E-02
147GO:0019344: cysteine biosynthetic process1.17E-02
148GO:0007010: cytoskeleton organization1.17E-02
149GO:0010073: meristem maintenance1.26E-02
150GO:0043622: cortical microtubule organization1.26E-02
151GO:0016310: phosphorylation1.30E-02
152GO:0051260: protein homooligomerization1.34E-02
153GO:0010017: red or far-red light signaling pathway1.43E-02
154GO:2000022: regulation of jasmonic acid mediated signaling pathway1.43E-02
155GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.53E-02
156GO:0009306: protein secretion1.62E-02
157GO:0010091: trichome branching1.62E-02
158GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.71E-02
159GO:0000271: polysaccharide biosynthetic process1.81E-02
160GO:0080022: primary root development1.81E-02
161GO:0008033: tRNA processing1.81E-02
162GO:0010087: phloem or xylem histogenesis1.81E-02
163GO:0048653: anther development1.81E-02
164GO:0042631: cellular response to water deprivation1.81E-02
165GO:0000226: microtubule cytoskeleton organization1.81E-02
166GO:0010197: polar nucleus fusion1.91E-02
167GO:0010182: sugar mediated signaling pathway1.91E-02
168GO:0008360: regulation of cell shape1.91E-02
169GO:0009958: positive gravitropism1.91E-02
170GO:0007018: microtubule-based movement2.01E-02
171GO:0008654: phospholipid biosynthetic process2.11E-02
172GO:0009851: auxin biosynthetic process2.11E-02
173GO:0009791: post-embryonic development2.11E-02
174GO:0006413: translational initiation2.19E-02
175GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.22E-02
176GO:0032502: developmental process2.32E-02
177GO:0016032: viral process2.32E-02
178GO:0045490: pectin catabolic process2.35E-02
179GO:0009828: plant-type cell wall loosening2.54E-02
180GO:0009639: response to red or far red light2.54E-02
181GO:0006464: cellular protein modification process2.54E-02
182GO:0071805: potassium ion transmembrane transport2.65E-02
183GO:0016126: sterol biosynthetic process2.88E-02
184GO:0009911: positive regulation of flower development2.88E-02
185GO:0010029: regulation of seed germination3.00E-02
186GO:0010411: xyloglucan metabolic process3.24E-02
187GO:0009416: response to light stimulus3.35E-02
188GO:0055114: oxidation-reduction process3.51E-02
189GO:0048527: lateral root development3.86E-02
190GO:0009631: cold acclimation3.86E-02
191GO:0016051: carbohydrate biosynthetic process4.12E-02
192GO:0048366: leaf development4.27E-02
193GO:0044550: secondary metabolite biosynthetic process4.87E-02
194GO:0006468: protein phosphorylation4.89E-02
195GO:0008283: cell proliferation4.93E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:1990534: thermospermine oxidase activity0.00E+00
3GO:0008176: tRNA (guanine-N7-)-methyltransferase activity0.00E+00
4GO:0019136: deoxynucleoside kinase activity0.00E+00
5GO:0047918: GDP-mannose 3,5-epimerase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0019808: polyamine binding0.00E+00
8GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0000293: ferric-chelate reductase activity8.46E-05
11GO:0008017: microtubule binding1.28E-04
12GO:0050139: nicotinate-N-glucosyltransferase activity2.25E-04
13GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.25E-04
14GO:0003984: acetolactate synthase activity2.25E-04
15GO:0030247: polysaccharide binding4.54E-04
16GO:0048531: beta-1,3-galactosyltransferase activity5.00E-04
17GO:0017118: lipoyltransferase activity5.00E-04
18GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.00E-04
19GO:0009977: proton motive force dependent protein transmembrane transporter activity5.00E-04
20GO:0033741: adenylyl-sulfate reductase (glutathione) activity5.00E-04
21GO:0003938: IMP dehydrogenase activity5.00E-04
22GO:0004312: fatty acid synthase activity5.00E-04
23GO:0009973: adenylyl-sulfate reductase activity5.00E-04
24GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.00E-04
25GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity5.00E-04
26GO:0015929: hexosaminidase activity5.00E-04
27GO:0004412: homoserine dehydrogenase activity5.00E-04
28GO:0004563: beta-N-acetylhexosaminidase activity5.00E-04
29GO:0004512: inositol-3-phosphate synthase activity5.00E-04
30GO:0004049: anthranilate synthase activity8.13E-04
31GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity8.13E-04
32GO:0001872: (1->3)-beta-D-glucan binding1.16E-03
33GO:0004072: aspartate kinase activity1.16E-03
34GO:0000254: C-4 methylsterol oxidase activity1.16E-03
35GO:0035529: NADH pyrophosphatase activity1.16E-03
36GO:0003999: adenine phosphoribosyltransferase activity1.16E-03
37GO:0030570: pectate lyase activity1.36E-03
38GO:0046556: alpha-L-arabinofuranosidase activity1.54E-03
39GO:0004737: pyruvate decarboxylase activity1.54E-03
40GO:0008409: 5'-3' exonuclease activity1.54E-03
41GO:0009044: xylan 1,4-beta-xylosidase activity1.54E-03
42GO:0004040: amidase activity1.97E-03
43GO:0016846: carbon-sulfur lyase activity1.97E-03
44GO:0016773: phosphotransferase activity, alcohol group as acceptor1.97E-03
45GO:0042578: phosphoric ester hydrolase activity2.43E-03
46GO:0030976: thiamine pyrophosphate binding2.43E-03
47GO:2001070: starch binding2.43E-03
48GO:0004709: MAP kinase kinase kinase activity2.43E-03
49GO:0016208: AMP binding2.43E-03
50GO:0016462: pyrophosphatase activity2.43E-03
51GO:0003730: mRNA 3'-UTR binding2.91E-03
52GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.91E-03
53GO:0016832: aldehyde-lyase activity2.91E-03
54GO:0003872: 6-phosphofructokinase activity3.43E-03
55GO:0043022: ribosome binding3.98E-03
56GO:0008236: serine-type peptidase activity4.10E-03
57GO:0003747: translation release factor activity5.16E-03
58GO:0051287: NAD binding8.53E-03
59GO:0000175: 3'-5'-exoribonuclease activity8.57E-03
60GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.33E-03
61GO:0008131: primary amine oxidase activity9.33E-03
62GO:0004190: aspartic-type endopeptidase activity1.01E-02
63GO:0003777: microtubule motor activity1.05E-02
64GO:0003887: DNA-directed DNA polymerase activity1.09E-02
65GO:0052689: carboxylic ester hydrolase activity1.13E-02
66GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.16E-02
67GO:0005528: FK506 binding1.17E-02
68GO:0003714: transcription corepressor activity1.17E-02
69GO:0015079: potassium ion transmembrane transporter activity1.26E-02
70GO:0016874: ligase activity1.28E-02
71GO:0004871: signal transducer activity1.33E-02
72GO:0019706: protein-cysteine S-palmitoyltransferase activity1.34E-02
73GO:0008408: 3'-5' exonuclease activity1.34E-02
74GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.43E-02
75GO:0046872: metal ion binding1.61E-02
76GO:0003727: single-stranded RNA binding1.62E-02
77GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.75E-02
78GO:0016829: lyase activity1.84E-02
79GO:0004252: serine-type endopeptidase activity1.89E-02
80GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.19E-02
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.43E-02
82GO:0005506: iron ion binding2.52E-02
83GO:0003743: translation initiation factor activity2.75E-02
84GO:0016597: amino acid binding2.77E-02
85GO:0042802: identical protein binding2.99E-02
86GO:0004721: phosphoprotein phosphatase activity3.24E-02
87GO:0016788: hydrolase activity, acting on ester bonds3.70E-02
88GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.86E-02
89GO:0005524: ATP binding3.91E-02
90GO:0050660: flavin adenine dinucleotide binding4.19E-02
91GO:0003993: acid phosphatase activity4.25E-02
92GO:0016740: transferase activity4.28E-02
93GO:0004712: protein serine/threonine/tyrosine kinase activity4.39E-02
94GO:0004497: monooxygenase activity4.49E-02
95GO:0051539: 4 iron, 4 sulfur cluster binding4.52E-02
96GO:0050661: NADP binding4.52E-02
97GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.71E-02
98GO:0003723: RNA binding4.98E-02
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Gene type



Gene DE type