co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0090322: regulation of superoxide metabolic process	0.00E+00
3	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0019988: charged-tRNA amino acid modification	0.00E+00
6	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
7	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
8	GO:0045014: negative regulation of transcription by glucose	0.00E+00
9	GO:0046620: regulation of organ growth	3.46E-06
10	GO:0042793: transcription from plastid promoter	7.90E-05
11	GO:0009733: response to auxin	1.82E-04
12	GO:0042255: ribosome assembly	1.85E-04
13	GO:0006353: DNA-templated transcription, termination	1.85E-04
14	GO:0033206: meiotic cytokinesis	2.16E-04
15	GO:0015904: tetracycline transport	2.16E-04
16	GO:1903866: palisade mesophyll development	2.16E-04
17	GO:0009828: plant-type cell wall loosening	2.68E-04
18	GO:1900865: chloroplast RNA modification	3.31E-04
19	GO:0006949: syncytium formation	3.88E-04
20	GO:1900033: negative regulation of trichome patterning	4.81E-04
21	GO:0080009: mRNA methylation	4.81E-04
22	GO:1901529: positive regulation of anion channel activity	4.81E-04
23	GO:0010569: regulation of double-strand break repair via homologous recombination	4.81E-04
24	GO:2000071: regulation of defense response by callose deposition	4.81E-04
25	GO:0090391: granum assembly	7.83E-04
26	GO:0006518: peptide metabolic process	7.83E-04
27	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	7.83E-04
28	GO:0006397: mRNA processing	8.07E-04
29	GO:0080147: root hair cell development	9.02E-04
30	GO:0007276: gamete generation	1.12E-03
31	GO:0016556: mRNA modification	1.12E-03
32	GO:0009664: plant-type cell wall organization	1.18E-03
33	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.29E-03
34	GO:0006364: rRNA processing	1.29E-03
35	GO:0006808: regulation of nitrogen utilization	1.48E-03
36	GO:0048629: trichome patterning	1.48E-03
37	GO:1900864: mitochondrial RNA modification	1.48E-03
38	GO:0006221: pyrimidine nucleotide biosynthetic process	1.48E-03
39	GO:0008033: tRNA processing	1.63E-03
40	GO:0010118: stomatal movement	1.63E-03
41	GO:0080110: sporopollenin biosynthetic process	1.89E-03
42	GO:0016131: brassinosteroid metabolic process	1.89E-03
43	GO:0016123: xanthophyll biosynthetic process	1.89E-03
44	GO:0016120: carotene biosynthetic process	1.89E-03
45	GO:0080156: mitochondrial mRNA modification	2.17E-03
46	GO:1902456: regulation of stomatal opening	2.33E-03
47	GO:0003006: developmental process involved in reproduction	2.33E-03
48	GO:0009643: photosynthetic acclimation	2.33E-03
49	GO:0006014: D-ribose metabolic process	2.33E-03
50	GO:0016554: cytidine to uridine editing	2.33E-03
51	GO:0009913: epidermal cell differentiation	2.33E-03
52	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.80E-03
53	GO:0010310: regulation of hydrogen peroxide metabolic process	2.80E-03
54	GO:2000033: regulation of seed dormancy process	2.80E-03
55	GO:0015937: coenzyme A biosynthetic process	3.30E-03
56	GO:0010103: stomatal complex morphogenesis	3.30E-03
57	GO:0006401: RNA catabolic process	3.30E-03
58	GO:0040008: regulation of growth	3.79E-03
59	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	3.82E-03
60	GO:0006402: mRNA catabolic process	3.82E-03
61	GO:0010492: maintenance of shoot apical meristem identity	3.82E-03
62	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.82E-03
63	GO:0032544: plastid translation	4.38E-03
64	GO:0010233: phloem transport	4.38E-03
65	GO:0010497: plasmodesmata-mediated intercellular transport	4.38E-03
66	GO:0019430: removal of superoxide radicals	4.38E-03
67	GO:0000373: Group II intron splicing	4.95E-03
68	GO:0048589: developmental growth	4.95E-03
69	GO:0048507: meristem development	4.95E-03
70	GO:0009867: jasmonic acid mediated signaling pathway	5.14E-03
71	GO:0031425: chloroplast RNA processing	5.56E-03
72	GO:0009734: auxin-activated signaling pathway	5.76E-03
73	GO:0006535: cysteine biosynthetic process from serine	6.18E-03
74	GO:0048829: root cap development	6.18E-03
75	GO:0045036: protein targeting to chloroplast	6.18E-03
76	GO:0016441: posttranscriptional gene silencing	6.18E-03
77	GO:0009926: auxin polar transport	6.63E-03
78	GO:0009826: unidimensional cell growth	6.68E-03
79	GO:0009750: response to fructose	6.84E-03
80	GO:0009682: induced systemic resistance	6.84E-03
81	GO:0009658: chloroplast organization	7.01E-03
82	GO:0010152: pollen maturation	7.51E-03
83	GO:0045037: protein import into chloroplast stroma	7.51E-03
84	GO:0010582: floral meristem determinacy	7.51E-03
85	GO:0009416: response to light stimulus	8.18E-03
86	GO:0010588: cotyledon vascular tissue pattern formation	8.22E-03
87	GO:0010102: lateral root morphogenesis	8.22E-03
88	GO:0009887: animal organ morphogenesis	8.94E-03
89	GO:0048467: gynoecium development	8.94E-03
90	GO:0010020: chloroplast fission	8.94E-03
91	GO:0006270: DNA replication initiation	8.94E-03
92	GO:0080188: RNA-directed DNA methylation	9.69E-03
93	GO:0006636: unsaturated fatty acid biosynthetic process	1.05E-02
94	GO:0048367: shoot system development	1.09E-02
95	GO:2000377: regulation of reactive oxygen species metabolic process	1.12E-02
96	GO:0019344: cysteine biosynthetic process	1.12E-02
97	GO:0009863: salicylic acid mediated signaling pathway	1.12E-02
98	GO:0010187: negative regulation of seed germination	1.12E-02
99	GO:0009740: gibberellic acid mediated signaling pathway	1.20E-02
100	GO:0019953: sexual reproduction	1.21E-02
101	GO:0003333: amino acid transmembrane transport	1.29E-02
102	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.37E-02
103	GO:0032259: methylation	1.43E-02
104	GO:0042127: regulation of cell proliferation	1.55E-02
105	GO:0010584: pollen exine formation	1.55E-02
106	GO:0048443: stamen development	1.55E-02
107	GO:0080022: primary root development	1.74E-02
108	GO:0010501: RNA secondary structure unwinding	1.74E-02
109	GO:0010087: phloem or xylem histogenesis	1.74E-02
110	GO:0009741: response to brassinosteroid	1.83E-02
111	GO:0010268: brassinosteroid homeostasis	1.83E-02
112	GO:0010305: leaf vascular tissue pattern formation	1.83E-02
113	GO:0007018: microtubule-based movement	1.93E-02
114	GO:0048825: cotyledon development	2.02E-02
115	GO:0009749: response to glucose	2.02E-02
116	GO:0019252: starch biosynthetic process	2.02E-02
117	GO:0002229: defense response to oomycetes	2.12E-02
118	GO:0010583: response to cyclopentenone	2.23E-02
119	GO:0031047: gene silencing by RNA	2.23E-02
120	GO:0019761: glucosinolate biosynthetic process	2.23E-02
121	GO:0032502: developmental process	2.23E-02
122	GO:0009451: RNA modification	2.26E-02
123	GO:0019760: glucosinolate metabolic process	2.44E-02
124	GO:0009739: response to gibberellin	2.47E-02
125	GO:0008380: RNA splicing	2.64E-02
126	GO:0010027: thylakoid membrane organization	2.76E-02
127	GO:0010029: regulation of seed germination	2.87E-02
128	GO:0015995: chlorophyll biosynthetic process	3.10E-02
129	GO:0016311: dephosphorylation	3.22E-02
130	GO:0016310: phosphorylation	3.26E-02
131	GO:0048481: plant ovule development	3.34E-02
132	GO:0010218: response to far red light	3.58E-02
133	GO:0045893: positive regulation of transcription, DNA-templated	3.69E-02
134	GO:0006865: amino acid transport	3.82E-02
135	GO:0080167: response to karrikin	4.23E-02
136	GO:0006468: protein phosphorylation	4.34E-02
137	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.38E-02
138	GO:0009744: response to sucrose	4.73E-02
139	GO:0015979: photosynthesis	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
3	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
4	GO:0003723: RNA binding	4.69E-07
5	GO:0004519: endonuclease activity	1.72E-04
6	GO:0008395: steroid hydroxylase activity	2.16E-04
7	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.16E-04
8	GO:0004016: adenylate cyclase activity	2.16E-04
9	GO:0004632: phosphopantothenate--cysteine ligase activity	2.16E-04
10	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.16E-04
11	GO:0019843: rRNA binding	4.32E-04
12	GO:0042389: omega-3 fatty acid desaturase activity	4.81E-04
13	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	4.81E-04
14	GO:0008493: tetracycline transporter activity	4.81E-04
15	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.81E-04
16	GO:0003725: double-stranded RNA binding	5.83E-04
17	GO:0009041: uridylate kinase activity	1.12E-03
18	GO:0003727: single-stranded RNA binding	1.40E-03
19	GO:0010011: auxin binding	1.48E-03
20	GO:0010328: auxin influx transmembrane transporter activity	1.48E-03
21	GO:0004930: G-protein coupled receptor activity	1.48E-03
22	GO:0004888: transmembrane signaling receptor activity	1.89E-03
23	GO:0003688: DNA replication origin binding	2.33E-03
24	GO:0004784: superoxide dismutase activity	2.33E-03
25	GO:0004124: cysteine synthase activity	2.80E-03
26	GO:0004747: ribokinase activity	2.80E-03
27	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.15E-03
28	GO:0008865: fructokinase activity	3.82E-03
29	GO:0003724: RNA helicase activity	4.38E-03
30	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.38E-03
31	GO:0000989: transcription factor activity, transcription factor binding	4.95E-03
32	GO:0008168: methyltransferase activity	6.68E-03
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.03E-03
34	GO:0043621: protein self-association	7.17E-03
35	GO:0000049: tRNA binding	7.51E-03
36	GO:0000175: 3'-5'-exoribonuclease activity	8.22E-03
37	GO:0003690: double-stranded DNA binding	9.26E-03
38	GO:0008026: ATP-dependent helicase activity	1.35E-02
39	GO:0030570: pectate lyase activity	1.46E-02
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.64E-02
41	GO:0001085: RNA polymerase II transcription factor binding	1.83E-02
42	GO:0050662: coenzyme binding	1.93E-02
43	GO:0010181: FMN binding	1.93E-02
44	GO:0019901: protein kinase binding	2.02E-02
45	GO:0004518: nuclease activity	2.23E-02
46	GO:0003677: DNA binding	2.28E-02
47	GO:0005200: structural constituent of cytoskeleton	2.54E-02
48	GO:0051213: dioxygenase activity	2.76E-02
49	GO:0004004: ATP-dependent RNA helicase activity	3.10E-02
50	GO:0016788: hydrolase activity, acting on ester bonds	3.49E-02
51	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.58E-02
52	GO:0004222: metalloendopeptidase activity	3.58E-02
53	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.70E-02
54	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.95E-02
55	GO:0003993: acid phosphatase activity	4.07E-02
56	GO:0004674: protein serine/threonine kinase activity	4.28E-02
57	GO:0043565: sequence-specific DNA binding	4.58E-02
58	GO:0052689: carboxylic ester hydrolase activity	4.67E-02
59	GO:0016301: kinase activity	4.99E-02