co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G49290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0009606: tropism	0.00E+00
6	GO:0035884: arabinan biosynthetic process	0.00E+00
7	GO:0090322: regulation of superoxide metabolic process	0.00E+00
8	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
9	GO:0097164: ammonium ion metabolic process	0.00E+00
10	GO:0045184: establishment of protein localization	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
13	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
14	GO:0019988: charged-tRNA amino acid modification	0.00E+00
15	GO:0090615: mitochondrial mRNA processing	0.00E+00
16	GO:0031222: arabinan catabolic process	0.00E+00
17	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
18	GO:0042793: transcription from plastid promoter	4.99E-10
19	GO:0009658: chloroplast organization	4.31E-06
20	GO:0010569: regulation of double-strand break repair via homologous recombination	1.39E-05
21	GO:0006518: peptide metabolic process	4.67E-05
22	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.35E-05
23	GO:2000038: regulation of stomatal complex development	1.70E-04
24	GO:0009416: response to light stimulus	2.66E-04
25	GO:0009913: epidermal cell differentiation	3.63E-04
26	GO:0009734: auxin-activated signaling pathway	5.09E-04
27	GO:0016998: cell wall macromolecule catabolic process	5.23E-04
28	GO:0042659: regulation of cell fate specification	5.66E-04
29	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.66E-04
30	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	5.66E-04
31	GO:0080112: seed growth	5.66E-04
32	GO:1905039: carboxylic acid transmembrane transport	5.66E-04
33	GO:1905200: gibberellic acid transmembrane transport	5.66E-04
34	GO:0090558: plant epidermis development	5.66E-04
35	GO:1903866: palisade mesophyll development	5.66E-04
36	GO:0010063: positive regulation of trichoblast fate specification	5.66E-04
37	GO:0090063: positive regulation of microtubule nucleation	5.66E-04
38	GO:0035987: endodermal cell differentiation	5.66E-04
39	GO:0043609: regulation of carbon utilization	5.66E-04
40	GO:0006436: tryptophanyl-tRNA aminoacylation	5.66E-04
41	GO:0015904: tetracycline transport	5.66E-04
42	GO:0034757: negative regulation of iron ion transport	5.66E-04
43	GO:0006955: immune response	6.19E-04
44	GO:0042255: ribosome assembly	7.69E-04
45	GO:0046620: regulation of organ growth	7.69E-04
46	GO:0006353: DNA-templated transcription, termination	7.69E-04
47	GO:0000105: histidine biosynthetic process	7.69E-04
48	GO:0007389: pattern specification process	9.35E-04
49	GO:0033566: gamma-tubulin complex localization	1.22E-03
50	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.22E-03
51	GO:0070981: L-asparagine biosynthetic process	1.22E-03
52	GO:0010271: regulation of chlorophyll catabolic process	1.22E-03
53	GO:0018026: peptidyl-lysine monomethylation	1.22E-03
54	GO:0009662: etioplast organization	1.22E-03
55	GO:1900033: negative regulation of trichome patterning	1.22E-03
56	GO:1904143: positive regulation of carotenoid biosynthetic process	1.22E-03
57	GO:0080009: mRNA methylation	1.22E-03
58	GO:0006529: asparagine biosynthetic process	1.22E-03
59	GO:0009875: pollen-pistil interaction	1.22E-03
60	GO:2000123: positive regulation of stomatal complex development	1.22E-03
61	GO:1900865: chloroplast RNA modification	1.32E-03
62	GO:0006535: cysteine biosynthetic process from serine	1.54E-03
63	GO:0048829: root cap development	1.54E-03
64	GO:0009451: RNA modification	1.55E-03
65	GO:0090708: specification of plant organ axis polarity	2.00E-03
66	GO:0006000: fructose metabolic process	2.00E-03
67	GO:0080117: secondary growth	2.00E-03
68	GO:0090391: granum assembly	2.00E-03
69	GO:0045604: regulation of epidermal cell differentiation	2.00E-03
70	GO:0042780: tRNA 3'-end processing	2.00E-03
71	GO:0001578: microtubule bundle formation	2.00E-03
72	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.00E-03
73	GO:0010588: cotyledon vascular tissue pattern formation	2.32E-03
74	GO:0009733: response to auxin	2.35E-03
75	GO:0048481: plant ovule development	2.89E-03
76	GO:0010239: chloroplast mRNA processing	2.90E-03
77	GO:0010306: rhamnogalacturonan II biosynthetic process	2.90E-03
78	GO:0046739: transport of virus in multicellular host	2.90E-03
79	GO:0010371: regulation of gibberellin biosynthetic process	2.90E-03
80	GO:1902476: chloride transmembrane transport	2.90E-03
81	GO:0010071: root meristem specification	2.90E-03
82	GO:0080188: RNA-directed DNA methylation	2.94E-03
83	GO:0019344: cysteine biosynthetic process	3.65E-03
84	GO:0051322: anaphase	3.91E-03
85	GO:0030104: water homeostasis	3.91E-03
86	GO:0006221: pyrimidine nucleotide biosynthetic process	3.91E-03
87	GO:0006021: inositol biosynthetic process	3.91E-03
88	GO:0006346: methylation-dependent chromatin silencing	3.91E-03
89	GO:0006479: protein methylation	3.91E-03
90	GO:0048629: trichome patterning	3.91E-03
91	GO:1900864: mitochondrial RNA modification	3.91E-03
92	GO:0051302: regulation of cell division	4.03E-03
93	GO:0003333: amino acid transmembrane transport	4.43E-03
94	GO:0032876: negative regulation of DNA endoreduplication	5.02E-03
95	GO:0030308: negative regulation of cell growth	5.02E-03
96	GO:0010375: stomatal complex patterning	5.02E-03
97	GO:0080110: sporopollenin biosynthetic process	5.02E-03
98	GO:0048497: maintenance of floral organ identity	5.02E-03
99	GO:0016123: xanthophyll biosynthetic process	5.02E-03
100	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.30E-03
101	GO:0009926: auxin polar transport	5.43E-03
102	GO:0042127: regulation of cell proliferation	5.77E-03
103	GO:0016554: cytidine to uridine editing	6.22E-03
104	GO:1902456: regulation of stomatal opening	6.22E-03
105	GO:0048831: regulation of shoot system development	6.22E-03
106	GO:0010315: auxin efflux	6.22E-03
107	GO:0003006: developmental process involved in reproduction	6.22E-03
108	GO:0009643: photosynthetic acclimation	6.22E-03
109	GO:0006014: D-ribose metabolic process	6.22E-03
110	GO:0010087: phloem or xylem histogenesis	6.76E-03
111	GO:0010305: leaf vascular tissue pattern formation	7.30E-03
112	GO:0009955: adaxial/abaxial pattern specification	7.52E-03
113	GO:0071470: cellular response to osmotic stress	7.52E-03
114	GO:0009942: longitudinal axis specification	7.52E-03
115	GO:0048509: regulation of meristem development	7.52E-03
116	GO:1901259: chloroplast rRNA processing	7.52E-03
117	GO:2000037: regulation of stomatal complex patterning	7.52E-03
118	GO:0010310: regulation of hydrogen peroxide metabolic process	7.52E-03
119	GO:2000067: regulation of root morphogenesis	7.52E-03
120	GO:0009646: response to absence of light	7.86E-03
121	GO:0008380: RNA splicing	8.19E-03
122	GO:0048825: cotyledon development	8.43E-03
123	GO:0007050: cell cycle arrest	8.91E-03
124	GO:0048437: floral organ development	8.91E-03
125	GO:0006821: chloride transport	8.91E-03
126	GO:0015937: coenzyme A biosynthetic process	8.91E-03
127	GO:0010103: stomatal complex morphogenesis	8.91E-03
128	GO:0080156: mitochondrial mRNA modification	9.03E-03
129	GO:0010583: response to cyclopentenone	9.66E-03
130	GO:0032502: developmental process	9.66E-03
131	GO:0048367: shoot system development	1.03E-02
132	GO:0001522: pseudouridine synthesis	1.04E-02
133	GO:0009642: response to light intensity	1.04E-02
134	GO:0048766: root hair initiation	1.04E-02
135	GO:0055075: potassium ion homeostasis	1.04E-02
136	GO:0052543: callose deposition in cell wall	1.04E-02
137	GO:0010252: auxin homeostasis	1.10E-02
138	GO:0009828: plant-type cell wall loosening	1.10E-02
139	GO:0006002: fructose 6-phosphate metabolic process	1.19E-02
140	GO:0019430: removal of superoxide radicals	1.19E-02
141	GO:0010497: plasmodesmata-mediated intercellular transport	1.19E-02
142	GO:0009657: plastid organization	1.19E-02
143	GO:0032544: plastid translation	1.19E-02
144	GO:0010027: thylakoid membrane organization	1.31E-02
145	GO:0048507: meristem development	1.36E-02
146	GO:0000373: Group II intron splicing	1.36E-02
147	GO:0048589: developmental growth	1.36E-02
148	GO:0000902: cell morphogenesis	1.36E-02
149	GO:0009793: embryo development ending in seed dormancy	1.46E-02
150	GO:0042761: very long-chain fatty acid biosynthetic process	1.53E-02
151	GO:2000280: regulation of root development	1.53E-02
152	GO:0006349: regulation of gene expression by genetic imprinting	1.53E-02
153	GO:0008356: asymmetric cell division	1.53E-02
154	GO:0010411: xyloglucan metabolic process	1.55E-02
155	GO:0048366: leaf development	1.56E-02
156	GO:0010048: vernalization response	1.71E-02
157	GO:0045036: protein targeting to chloroplast	1.71E-02
158	GO:0006949: syncytium formation	1.71E-02
159	GO:0000160: phosphorelay signal transduction system	1.81E-02
160	GO:0015770: sucrose transport	1.89E-02
161	GO:1903507: negative regulation of nucleic acid-templated transcription	1.89E-02
162	GO:0009750: response to fructose	1.89E-02
163	GO:0048229: gametophyte development	1.89E-02
164	GO:0008361: regulation of cell size	2.08E-02
165	GO:0006790: sulfur compound metabolic process	2.08E-02
166	GO:0012501: programmed cell death	2.08E-02
167	GO:0010152: pollen maturation	2.08E-02
168	GO:0045037: protein import into chloroplast stroma	2.08E-02
169	GO:0010582: floral meristem determinacy	2.08E-02
170	GO:0006865: amino acid transport	2.09E-02
171	GO:0030048: actin filament-based movement	2.28E-02
172	GO:0010102: lateral root morphogenesis	2.28E-02
173	GO:0009691: cytokinin biosynthetic process	2.28E-02
174	GO:0010075: regulation of meristem growth	2.28E-02
175	GO:0040008: regulation of growth	2.36E-02
176	GO:0048467: gynoecium development	2.49E-02
177	GO:0006541: glutamine metabolic process	2.49E-02
178	GO:0010020: chloroplast fission	2.49E-02
179	GO:0009901: anther dehiscence	2.70E-02
180	GO:0046854: phosphatidylinositol phosphorylation	2.70E-02
181	GO:0009739: response to gibberellin	2.88E-02
182	GO:0006636: unsaturated fatty acid biosynthetic process	2.91E-02
183	GO:0006833: water transport	2.91E-02
184	GO:0042546: cell wall biogenesis	2.93E-02
185	GO:0000027: ribosomal large subunit assembly	3.14E-02
186	GO:0080147: root hair cell development	3.14E-02
187	GO:0048364: root development	3.20E-02
188	GO:0006418: tRNA aminoacylation for protein translation	3.37E-02
189	GO:0010073: meristem maintenance	3.37E-02
190	GO:0009664: plant-type cell wall organization	3.54E-02
191	GO:0006306: DNA methylation	3.60E-02
192	GO:0015992: proton transport	3.60E-02
193	GO:0010431: seed maturation	3.60E-02
194	GO:0006364: rRNA processing	3.79E-02
195	GO:0009736: cytokinin-activated signaling pathway	3.79E-02
196	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.84E-02
197	GO:0071215: cellular response to abscisic acid stimulus	4.08E-02
198	GO:0010082: regulation of root meristem growth	4.08E-02
199	GO:0006417: regulation of translation	4.20E-02
200	GO:0010584: pollen exine formation	4.33E-02
201	GO:0048443: stamen development	4.33E-02
202	GO:0070417: cellular response to cold	4.59E-02
203	GO:0048316: seed development	4.62E-02
204	GO:0042631: cellular response to water deprivation	4.85E-02
205	GO:0000226: microtubule cytoskeleton organization	4.85E-02
206	GO:0080022: primary root development	4.85E-02
207	GO:0008033: tRNA processing	4.85E-02
208	GO:0010118: stomatal movement	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
2	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
3	GO:0042834: peptidoglycan binding	0.00E+00
4	GO:0071633: dihydroceramidase activity	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0004401: histidinol-phosphatase activity	0.00E+00
8	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
9	GO:0003727: single-stranded RNA binding	7.12E-05
10	GO:0003723: RNA binding	2.53E-04
11	GO:0004124: cysteine synthase activity	4.83E-04
12	GO:1905201: gibberellin transmembrane transporter activity	5.66E-04
13	GO:0004632: phosphopantothenate--cysteine ligase activity	5.66E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.66E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.66E-04
16	GO:0016274: protein-arginine N-methyltransferase activity	5.66E-04
17	GO:0004071: aspartate-ammonia ligase activity	5.66E-04
18	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	5.66E-04
19	GO:0052381: tRNA dimethylallyltransferase activity	5.66E-04
20	GO:0004830: tryptophan-tRNA ligase activity	5.66E-04
21	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.66E-04
22	GO:0004016: adenylate cyclase activity	5.66E-04
23	GO:0004400: histidinol-phosphate transaminase activity	5.66E-04
24	GO:0019843: rRNA binding	8.47E-04
25	GO:0004519: endonuclease activity	9.56E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	1.22E-03
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.22E-03
28	GO:0008805: carbon-monoxide oxygenase activity	1.22E-03
29	GO:0008934: inositol monophosphate 1-phosphatase activity	1.22E-03
30	GO:0008493: tetracycline transporter activity	1.22E-03
31	GO:0052833: inositol monophosphate 4-phosphatase activity	1.22E-03
32	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.22E-03
33	GO:0009884: cytokinin receptor activity	1.22E-03
34	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.22E-03
35	GO:0042389: omega-3 fatty acid desaturase activity	1.22E-03
36	GO:0009672: auxin:proton symporter activity	1.32E-03
37	GO:0017150: tRNA dihydrouridine synthase activity	2.00E-03
38	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.00E-03
39	GO:0016805: dipeptidase activity	2.00E-03
40	GO:0005034: osmosensor activity	2.00E-03
41	GO:0003725: double-stranded RNA binding	2.32E-03
42	GO:0010329: auxin efflux transmembrane transporter activity	2.32E-03
43	GO:0009982: pseudouridine synthase activity	2.32E-03
44	GO:0009678: hydrogen-translocating pyrophosphatase activity	2.90E-03
45	GO:0009041: uridylate kinase activity	2.90E-03
46	GO:0008508: bile acid:sodium symporter activity	2.90E-03
47	GO:0001872: (1->3)-beta-D-glucan binding	2.90E-03
48	GO:0010328: auxin influx transmembrane transporter activity	3.91E-03
49	GO:0005253: anion channel activity	3.91E-03
50	GO:0004930: G-protein coupled receptor activity	3.91E-03
51	GO:0046556: alpha-L-arabinofuranosidase activity	3.91E-03
52	GO:0016279: protein-lysine N-methyltransferase activity	3.91E-03
53	GO:0010011: auxin binding	3.91E-03
54	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.66E-03
55	GO:0004888: transmembrane signaling receptor activity	5.02E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.02E-03
57	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.02E-03
58	GO:0030570: pectate lyase activity	5.30E-03
59	GO:0005215: transporter activity	6.10E-03
60	GO:0004784: superoxide dismutase activity	6.22E-03
61	GO:0005247: voltage-gated chloride channel activity	6.22E-03
62	GO:2001070: starch binding	6.22E-03
63	GO:0001085: RNA polymerase II transcription factor binding	7.30E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.52E-03
65	GO:0016832: aldehyde-lyase activity	7.52E-03
66	GO:0004747: ribokinase activity	7.52E-03
67	GO:0019900: kinase binding	7.52E-03
68	GO:0005515: protein binding	8.86E-03
69	GO:0004427: inorganic diphosphatase activity	8.91E-03
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.03E-03
71	GO:0003777: microtubule motor activity	9.07E-03
72	GO:0008865: fructokinase activity	1.04E-02
73	GO:0008173: RNA methyltransferase activity	1.19E-02
74	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.19E-02
75	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.47E-02
76	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.55E-02
77	GO:0004673: protein histidine kinase activity	1.71E-02
78	GO:0008515: sucrose transmembrane transporter activity	1.89E-02
79	GO:0004222: metalloendopeptidase activity	1.90E-02
80	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.99E-02
81	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.18E-02
82	GO:0004674: protein serine/threonine kinase activity	2.19E-02
83	GO:0004022: alcohol dehydrogenase (NAD) activity	2.28E-02
84	GO:0031072: heat shock protein binding	2.28E-02
85	GO:0000155: phosphorelay sensor kinase activity	2.28E-02
86	GO:0004871: signal transducer activity	2.36E-02
87	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.49E-02
88	GO:0003774: motor activity	2.49E-02
89	GO:0051119: sugar transmembrane transporter activity	2.70E-02
90	GO:0004190: aspartic-type endopeptidase activity	2.70E-02
91	GO:0043621: protein self-association	3.05E-02
92	GO:0003714: transcription corepressor activity	3.14E-02
93	GO:0015293: symporter activity	3.17E-02
94	GO:0043424: protein histidine kinase binding	3.37E-02
95	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.40E-02
96	GO:0004707: MAP kinase activity	3.60E-02
97	GO:0008408: 3'-5' exonuclease activity	3.60E-02
98	GO:0003690: double-stranded DNA binding	3.92E-02
99	GO:0008168: methyltransferase activity	4.11E-02
100	GO:0015171: amino acid transmembrane transporter activity	4.20E-02
101	GO:0018024: histone-lysine N-methyltransferase activity	4.59E-02
102	GO:0004812: aminoacyl-tRNA ligase activity	4.59E-02
103	GO:0003682: chromatin binding	4.60E-02
104	GO:0004650: polygalacturonase activity	4.91E-02