Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042794: rRNA transcription from plastid promoter0.00E+00
2GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0000819: sister chromatid segregation0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0009606: tropism0.00E+00
9GO:0090322: regulation of superoxide metabolic process0.00E+00
10GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
11GO:1903224: regulation of endodermal cell differentiation0.00E+00
12GO:0035884: arabinan biosynthetic process0.00E+00
13GO:0080127: fruit septum development0.00E+00
14GO:0045184: establishment of protein localization0.00E+00
15GO:0044774: mitotic DNA integrity checkpoint0.00E+00
16GO:0033206: meiotic cytokinesis0.00E+00
17GO:0019988: charged-tRNA amino acid modification0.00E+00
18GO:0090615: mitochondrial mRNA processing0.00E+00
19GO:0000492: box C/D snoRNP assembly0.00E+00
20GO:0042793: transcription from plastid promoter7.72E-10
21GO:0009658: chloroplast organization9.15E-07
22GO:0010569: regulation of double-strand break repair via homologous recombination1.70E-05
23GO:0009416: response to light stimulus2.46E-05
24GO:0006353: DNA-templated transcription, termination4.83E-05
25GO:0006518: peptide metabolic process5.62E-05
26GO:0042127: regulation of cell proliferation9.50E-05
27GO:1900864: mitochondrial RNA modification2.01E-04
28GO:2000038: regulation of stomatal complex development2.01E-04
29GO:0006364: rRNA processing3.95E-04
30GO:0009913: epidermal cell differentiation4.24E-04
31GO:0009451: RNA modification4.95E-04
32GO:2000377: regulation of reactive oxygen species metabolic process4.96E-04
33GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.10E-04
34GO:2000033: regulation of seed dormancy process5.63E-04
35GO:0034757: negative regulation of iron ion transport6.28E-04
36GO:0042659: regulation of cell fate specification6.28E-04
37GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.28E-04
38GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.28E-04
39GO:1905039: carboxylic acid transmembrane transport6.28E-04
40GO:1905200: gibberellic acid transmembrane transport6.28E-04
41GO:0080112: seed growth6.28E-04
42GO:0090558: plant epidermis development6.28E-04
43GO:0010063: positive regulation of trichoblast fate specification6.28E-04
44GO:1903866: palisade mesophyll development6.28E-04
45GO:0090063: positive regulation of microtubule nucleation6.28E-04
46GO:0035987: endodermal cell differentiation6.28E-04
47GO:0006955: immune response7.20E-04
48GO:0006401: RNA catabolic process7.20E-04
49GO:0009734: auxin-activated signaling pathway7.50E-04
50GO:0009938: negative regulation of gibberellic acid mediated signaling pathway8.95E-04
51GO:0042255: ribosome assembly8.95E-04
52GO:0008033: tRNA processing1.09E-03
53GO:0007389: pattern specification process1.09E-03
54GO:0010305: leaf vascular tissue pattern formation1.20E-03
55GO:0009733: response to auxin1.33E-03
56GO:2000123: positive regulation of stomatal complex development1.35E-03
57GO:1901529: positive regulation of anion channel activity1.35E-03
58GO:0033566: gamma-tubulin complex localization1.35E-03
59GO:1902326: positive regulation of chlorophyll biosynthetic process1.35E-03
60GO:0010271: regulation of chlorophyll catabolic process1.35E-03
61GO:0018026: peptidyl-lysine monomethylation1.35E-03
62GO:0048731: system development1.35E-03
63GO:0009662: etioplast organization1.35E-03
64GO:1900033: negative regulation of trichome patterning1.35E-03
65GO:2000071: regulation of defense response by callose deposition1.35E-03
66GO:1904143: positive regulation of carotenoid biosynthetic process1.35E-03
67GO:0080009: mRNA methylation1.35E-03
68GO:1900865: chloroplast RNA modification1.54E-03
69GO:0010583: response to cyclopentenone1.70E-03
70GO:0048829: root cap development1.80E-03
71GO:0006351: transcription, DNA-templated1.82E-03
72GO:0048229: gametophyte development2.08E-03
73GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.23E-03
74GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.23E-03
75GO:0090708: specification of plant organ axis polarity2.23E-03
76GO:0080117: secondary growth2.23E-03
77GO:0090391: granum assembly2.23E-03
78GO:0042780: tRNA 3'-end processing2.23E-03
79GO:0001578: microtubule bundle formation2.23E-03
80GO:0010029: regulation of seed germination2.70E-03
81GO:0010588: cotyledon vascular tissue pattern formation2.72E-03
82GO:0010239: chloroplast mRNA processing3.23E-03
83GO:0009800: cinnamic acid biosynthetic process3.23E-03
84GO:0007276: gamete generation3.23E-03
85GO:0010306: rhamnogalacturonan II biosynthetic process3.23E-03
86GO:0043481: anthocyanin accumulation in tissues in response to UV light3.23E-03
87GO:1902290: positive regulation of defense response to oomycetes3.23E-03
88GO:0009558: embryo sac cellularization3.23E-03
89GO:0010371: regulation of gibberellin biosynthetic process3.23E-03
90GO:1902476: chloride transmembrane transport3.23E-03
91GO:0010071: root meristem specification3.23E-03
92GO:0080188: RNA-directed DNA methylation3.44E-03
93GO:0009863: salicylic acid mediated signaling pathway4.27E-03
94GO:0010187: negative regulation of seed germination4.27E-03
95GO:0051322: anaphase4.36E-03
96GO:0030104: water homeostasis4.36E-03
97GO:0006221: pyrimidine nucleotide biosynthetic process4.36E-03
98GO:0006808: regulation of nitrogen utilization4.36E-03
99GO:0006479: protein methylation4.36E-03
100GO:0048629: trichome patterning4.36E-03
101GO:0009867: jasmonic acid mediated signaling pathway4.80E-03
102GO:0003333: amino acid transmembrane transport5.19E-03
103GO:0016998: cell wall macromolecule catabolic process5.19E-03
104GO:0016123: xanthophyll biosynthetic process5.60E-03
105GO:0032876: negative regulation of DNA endoreduplication5.60E-03
106GO:0030308: negative regulation of cell growth5.60E-03
107GO:0010375: stomatal complex patterning5.60E-03
108GO:0080110: sporopollenin biosynthetic process5.60E-03
109GO:0016120: carotene biosynthetic process5.60E-03
110GO:0048497: maintenance of floral organ identity5.60E-03
111GO:0030001: metal ion transport5.67E-03
112GO:0048366: leaf development5.69E-03
113GO:2000022: regulation of jasmonic acid mediated signaling pathway5.69E-03
114GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.21E-03
115GO:0009959: negative gravitropism6.95E-03
116GO:0016554: cytidine to uridine editing6.95E-03
117GO:1902456: regulation of stomatal opening6.95E-03
118GO:0048831: regulation of shoot system development6.95E-03
119GO:0042176: regulation of protein catabolic process6.95E-03
120GO:0010315: auxin efflux6.95E-03
121GO:0003006: developmental process involved in reproduction6.95E-03
122GO:0006559: L-phenylalanine catabolic process6.95E-03
123GO:0009643: photosynthetic acclimation6.95E-03
124GO:0010304: PSII associated light-harvesting complex II catabolic process6.95E-03
125GO:0006355: regulation of transcription, DNA-templated7.30E-03
126GO:0010087: phloem or xylem histogenesis7.93E-03
127GO:0010118: stomatal movement7.93E-03
128GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.41E-03
129GO:0010310: regulation of hydrogen peroxide metabolic process8.41E-03
130GO:2000067: regulation of root morphogenesis8.41E-03
131GO:0009955: adaxial/abaxial pattern specification8.41E-03
132GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)8.41E-03
133GO:0048509: regulation of meristem development8.41E-03
134GO:1901259: chloroplast rRNA processing8.41E-03
135GO:2000037: regulation of stomatal complex patterning8.41E-03
136GO:0031347: regulation of defense response8.49E-03
137GO:0009741: response to brassinosteroid8.56E-03
138GO:0007018: microtubule-based movement9.21E-03
139GO:0048825: cotyledon development9.90E-03
140GO:0006821: chloride transport9.96E-03
141GO:0048437: floral organ development9.96E-03
142GO:0010444: guard mother cell differentiation9.96E-03
143GO:0000082: G1/S transition of mitotic cell cycle9.96E-03
144GO:0010103: stomatal complex morphogenesis9.96E-03
145GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway9.96E-03
146GO:0000712: resolution of meiotic recombination intermediates9.96E-03
147GO:0010374: stomatal complex development9.96E-03
148GO:0080156: mitochondrial mRNA modification1.06E-02
149GO:0032502: developmental process1.13E-02
150GO:0006402: mRNA catabolic process1.16E-02
151GO:0001522: pseudouridine synthesis1.16E-02
152GO:0009787: regulation of abscisic acid-activated signaling pathway1.16E-02
153GO:0009642: response to light intensity1.16E-02
154GO:0046620: regulation of organ growth1.16E-02
155GO:0048766: root hair initiation1.16E-02
156GO:0010492: maintenance of shoot apical meristem identity1.16E-02
157GO:0055075: potassium ion homeostasis1.16E-02
158GO:0052543: callose deposition in cell wall1.16E-02
159GO:0048316: seed development1.26E-02
160GO:0048367: shoot system development1.26E-02
161GO:0009828: plant-type cell wall loosening1.29E-02
162GO:0019430: removal of superoxide radicals1.34E-02
163GO:0009827: plant-type cell wall modification1.34E-02
164GO:0007186: G-protein coupled receptor signaling pathway1.34E-02
165GO:0010052: guard cell differentiation1.34E-02
166GO:0010233: phloem transport1.34E-02
167GO:0048574: long-day photoperiodism, flowering1.34E-02
168GO:0032544: plastid translation1.34E-02
169GO:0009740: gibberellic acid mediated signaling pathway1.42E-02
170GO:0000910: cytokinesis1.45E-02
171GO:0048507: meristem development1.52E-02
172GO:0000373: Group II intron splicing1.52E-02
173GO:0048589: developmental growth1.52E-02
174GO:0000902: cell morphogenesis1.52E-02
175GO:0010027: thylakoid membrane organization1.54E-02
176GO:0042761: very long-chain fatty acid biosynthetic process1.71E-02
177GO:2000280: regulation of root development1.71E-02
178GO:0006349: regulation of gene expression by genetic imprinting1.71E-02
179GO:0031425: chloroplast RNA processing1.71E-02
180GO:1900426: positive regulation of defense response to bacterium1.71E-02
181GO:0006259: DNA metabolic process1.91E-02
182GO:0010048: vernalization response1.91E-02
183GO:0006535: cysteine biosynthetic process from serine1.91E-02
184GO:0006949: syncytium formation1.91E-02
185GO:0048481: plant ovule development2.02E-02
186GO:0046856: phosphatidylinositol dephosphorylation2.12E-02
187GO:0006265: DNA topological change2.12E-02
188GO:0009682: induced systemic resistance2.12E-02
189GO:0008285: negative regulation of cell proliferation2.12E-02
190GO:1903507: negative regulation of nucleic acid-templated transcription2.12E-02
191GO:0015770: sucrose transport2.12E-02
192GO:0009750: response to fructose2.12E-02
193GO:0048765: root hair cell differentiation2.12E-02
194GO:0009793: embryo development ending in seed dormancy2.15E-02
195GO:0010218: response to far red light2.23E-02
196GO:0008361: regulation of cell size2.33E-02
197GO:0006312: mitotic recombination2.33E-02
198GO:0012501: programmed cell death2.33E-02
199GO:0010152: pollen maturation2.33E-02
200GO:0045037: protein import into chloroplast stroma2.33E-02
201GO:0010582: floral meristem determinacy2.33E-02
202GO:0006865: amino acid transport2.45E-02
203GO:0009790: embryo development2.47E-02
204GO:0010102: lateral root morphogenesis2.56E-02
205GO:0009691: cytokinin biosynthetic process2.56E-02
206GO:0048467: gynoecium development2.79E-02
207GO:0010020: chloroplast fission2.79E-02
208GO:0006270: DNA replication initiation2.79E-02
209GO:0009887: animal organ morphogenesis2.79E-02
210GO:0040008: regulation of growth2.88E-02
211GO:0009901: anther dehiscence3.02E-02
212GO:0006468: protein phosphorylation3.21E-02
213GO:0006636: unsaturated fatty acid biosynthetic process3.27E-02
214GO:0006833: water transport3.27E-02
215GO:0009744: response to sucrose3.30E-02
216GO:0009739: response to gibberellin3.51E-02
217GO:0019344: cysteine biosynthetic process3.52E-02
218GO:0080147: root hair cell development3.52E-02
219GO:0032259: methylation3.56E-02
220GO:0016042: lipid catabolic process3.63E-02
221GO:0051302: regulation of cell division3.77E-02
222GO:0006874: cellular calcium ion homeostasis3.77E-02
223GO:0010073: meristem maintenance3.77E-02
224GO:0006825: copper ion transport3.77E-02
225GO:0008380: RNA splicing3.80E-02
226GO:0006260: DNA replication3.99E-02
227GO:0048364: root development4.02E-02
228GO:0010431: seed maturation4.03E-02
229GO:0042538: hyperosmotic salinity response4.14E-02
230GO:0009664: plant-type cell wall organization4.14E-02
231GO:0006508: proteolysis4.16E-02
232GO:0030245: cellulose catabolic process4.30E-02
233GO:0010082: regulation of root meristem growth4.57E-02
234GO:0071215: cellular response to abscisic acid stimulus4.57E-02
235GO:0010584: pollen exine formation4.85E-02
236GO:0048443: stamen development4.85E-02
237GO:0006284: base-excision repair4.85E-02
238GO:0006417: regulation of translation4.91E-02
RankGO TermAdjusted P value
1GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
2GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
3GO:0008859: exoribonuclease II activity0.00E+00
4GO:0042834: peptidoglycan binding0.00E+00
5GO:0071633: dihydroceramidase activity0.00E+00
6GO:0003723: RNA binding1.00E-06
7GO:0004519: endonuclease activity3.94E-04
8GO:1905201: gibberellin transmembrane transporter activity6.28E-04
9GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.28E-04
10GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.28E-04
11GO:0016274: protein-arginine N-methyltransferase activity6.28E-04
12GO:0052381: tRNA dimethylallyltransferase activity6.28E-04
13GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.28E-04
14GO:0004654: polyribonucleotide nucleotidyltransferase activity6.28E-04
15GO:0004016: adenylate cyclase activity6.28E-04
16GO:0003727: single-stranded RNA binding8.92E-04
17GO:0008173: RNA methyltransferase activity1.09E-03
18GO:0019843: rRNA binding1.11E-03
19GO:0000989: transcription factor activity, transcription factor binding1.30E-03
20GO:0008805: carbon-monoxide oxygenase activity1.35E-03
21GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.35E-03
22GO:0009884: cytokinin receptor activity1.35E-03
23GO:0042389: omega-3 fatty acid desaturase activity1.35E-03
24GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.35E-03
25GO:0017150: tRNA dihydrouridine synthase activity2.23E-03
26GO:0045548: phenylalanine ammonia-lyase activity2.23E-03
27GO:0042781: 3'-tRNA processing endoribonuclease activity2.23E-03
28GO:0016805: dipeptidase activity2.23E-03
29GO:0005034: osmosensor activity2.23E-03
30GO:0009982: pseudouridine synthase activity2.72E-03
31GO:0003725: double-stranded RNA binding2.72E-03
32GO:0000175: 3'-5'-exoribonuclease activity2.72E-03
33GO:0001872: (1->3)-beta-D-glucan binding3.23E-03
34GO:0009041: uridylate kinase activity3.23E-03
35GO:0003916: DNA topoisomerase activity3.23E-03
36GO:0008168: methyltransferase activity3.99E-03
37GO:0004222: metalloendopeptidase activity4.01E-03
38GO:0010011: auxin binding4.36E-03
39GO:0010328: auxin influx transmembrane transporter activity4.36E-03
40GO:0005253: anion channel activity4.36E-03
41GO:0004930: G-protein coupled receptor activity4.36E-03
42GO:0016279: protein-lysine N-methyltransferase activity4.36E-03
43GO:0003700: transcription factor activity, sequence-specific DNA binding4.37E-03
44GO:0043565: sequence-specific DNA binding4.45E-03
45GO:0003697: single-stranded DNA binding4.80E-03
46GO:0008725: DNA-3-methyladenine glycosylase activity5.60E-03
47GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.60E-03
48GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding5.93E-03
49GO:0003677: DNA binding6.20E-03
50GO:0030570: pectate lyase activity6.21E-03
51GO:0005515: protein binding6.39E-03
52GO:0003688: DNA replication origin binding6.95E-03
53GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.95E-03
54GO:0004784: superoxide dismutase activity6.95E-03
55GO:0005247: voltage-gated chloride channel activity6.95E-03
56GO:0004674: protein serine/threonine kinase activity8.24E-03
57GO:0004124: cysteine synthase activity8.41E-03
58GO:0016832: aldehyde-lyase activity8.41E-03
59GO:0019900: kinase binding8.41E-03
60GO:0001085: RNA polymerase II transcription factor binding8.56E-03
61GO:0004871: signal transducer activity9.27E-03
62GO:0019901: protein kinase binding9.90E-03
63GO:0030515: snoRNA binding9.96E-03
64GO:0003690: double-stranded DNA binding1.02E-02
65GO:0003777: microtubule motor activity1.11E-02
66GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.34E-02
67GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.34E-02
68GO:0008237: metallopeptidase activity1.37E-02
69GO:0016788: hydrolase activity, acting on ester bonds1.59E-02
70GO:0009672: auxin:proton symporter activity1.71E-02
71GO:0004673: protein histidine kinase activity1.91E-02
72GO:0008515: sucrose transmembrane transporter activity2.12E-02
73GO:0008559: xenobiotic-transporting ATPase activity2.12E-02
74GO:0008289: lipid binding2.17E-02
75GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.33E-02
76GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.33E-02
77GO:0052689: carboxylic ester hydrolase activity2.48E-02
78GO:0004022: alcohol dehydrogenase (NAD) activity2.56E-02
79GO:0010329: auxin efflux transmembrane transporter activity2.56E-02
80GO:0031072: heat shock protein binding2.56E-02
81GO:0000155: phosphorelay sensor kinase activity2.56E-02
82GO:0004970: ionotropic glutamate receptor activity3.02E-02
83GO:0051119: sugar transmembrane transporter activity3.02E-02
84GO:0005217: intracellular ligand-gated ion channel activity3.02E-02
85GO:0004190: aspartic-type endopeptidase activity3.02E-02
86GO:0008017: microtubule binding3.23E-02
87GO:0003714: transcription corepressor activity3.52E-02
88GO:0043621: protein self-association3.57E-02
89GO:0015293: symporter activity3.71E-02
90GO:0005524: ATP binding3.75E-02
91GO:0043424: protein histidine kinase binding3.77E-02
92GO:0015079: potassium ion transmembrane transporter activity3.77E-02
93GO:0008094: DNA-dependent ATPase activity4.03E-02
94GO:0004540: ribonuclease activity4.03E-02
95GO:0004176: ATP-dependent peptidase activity4.03E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity4.03E-02
97GO:0008810: cellulase activity4.57E-02
98GO:0015171: amino acid transmembrane transporter activity4.91E-02
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Gene type



Gene DE type