Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G49140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071260: cellular response to mechanical stimulus0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:0061157: mRNA destabilization0.00E+00
4GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
5GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
6GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0019447: D-cysteine catabolic process0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0010412: mannan metabolic process0.00E+00
13GO:0071311: cellular response to acetate0.00E+00
14GO:0015843: methylammonium transport0.00E+00
15GO:0070979: protein K11-linked ubiquitination0.00E+00
16GO:0009734: auxin-activated signaling pathway6.82E-06
17GO:0009903: chloroplast avoidance movement9.36E-06
18GO:0040008: regulation of growth1.91E-05
19GO:0009733: response to auxin2.01E-05
20GO:0046620: regulation of organ growth2.20E-05
21GO:0031022: nuclear migration along microfilament3.12E-05
22GO:0009904: chloroplast accumulation movement1.82E-04
23GO:0009658: chloroplast organization4.19E-04
24GO:1902265: abscisic acid homeostasis4.53E-04
25GO:0043266: regulation of potassium ion transport4.53E-04
26GO:0010480: microsporocyte differentiation4.53E-04
27GO:2000021: regulation of ion homeostasis4.53E-04
28GO:0006264: mitochondrial DNA replication4.53E-04
29GO:0043609: regulation of carbon utilization4.53E-04
30GO:0033259: plastid DNA replication4.53E-04
31GO:0000066: mitochondrial ornithine transport4.53E-04
32GO:0050801: ion homeostasis4.53E-04
33GO:0006177: GMP biosynthetic process4.53E-04
34GO:0009787: regulation of abscisic acid-activated signaling pathway5.55E-04
35GO:0042255: ribosome assembly5.55E-04
36GO:0006002: fructose 6-phosphate metabolic process6.77E-04
37GO:0032502: developmental process9.19E-04
38GO:0009638: phototropism9.56E-04
39GO:1900871: chloroplast mRNA modification9.79E-04
40GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation9.79E-04
41GO:0071497: cellular response to freezing9.79E-04
42GO:0031648: protein destabilization9.79E-04
43GO:0006816: calcium ion transport1.28E-03
44GO:0051127: positive regulation of actin nucleation1.59E-03
45GO:0006000: fructose metabolic process1.59E-03
46GO:0071230: cellular response to amino acid stimulus1.59E-03
47GO:0031145: anaphase-promoting complex-dependent catabolic process1.59E-03
48GO:0051604: protein maturation1.59E-03
49GO:0006760: folic acid-containing compound metabolic process1.59E-03
50GO:0016050: vesicle organization1.59E-03
51GO:0010447: response to acidic pH1.59E-03
52GO:0030071: regulation of mitotic metaphase/anaphase transition2.31E-03
53GO:0051639: actin filament network formation2.31E-03
54GO:0044211: CTP salvage2.31E-03
55GO:0009800: cinnamic acid biosynthetic process2.31E-03
56GO:0006164: purine nucleotide biosynthetic process2.31E-03
57GO:0015696: ammonium transport2.31E-03
58GO:0046739: transport of virus in multicellular host2.31E-03
59GO:2000904: regulation of starch metabolic process2.31E-03
60GO:0043572: plastid fission2.31E-03
61GO:2001141: regulation of RNA biosynthetic process2.31E-03
62GO:0046836: glycolipid transport2.31E-03
63GO:0007231: osmosensory signaling pathway2.31E-03
64GO:0009637: response to blue light2.55E-03
65GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.76E-03
66GO:0051764: actin crosslink formation3.10E-03
67GO:0046355: mannan catabolic process3.10E-03
68GO:0072488: ammonium transmembrane transport3.10E-03
69GO:0015846: polyamine transport3.10E-03
70GO:0033500: carbohydrate homeostasis3.10E-03
71GO:0046656: folic acid biosynthetic process3.10E-03
72GO:0044206: UMP salvage3.10E-03
73GO:0009902: chloroplast relocation3.10E-03
74GO:0009165: nucleotide biosynthetic process3.10E-03
75GO:1901141: regulation of lignin biosynthetic process3.10E-03
76GO:2000022: regulation of jasmonic acid mediated signaling pathway3.47E-03
77GO:0009926: auxin polar transport3.53E-03
78GO:0010438: cellular response to sulfur starvation3.98E-03
79GO:0010158: abaxial cell fate specification3.98E-03
80GO:0032876: negative regulation of DNA endoreduplication3.98E-03
81GO:1902183: regulation of shoot apical meristem development3.98E-03
82GO:0007275: multicellular organism development4.13E-03
83GO:0009959: negative gravitropism4.92E-03
84GO:0045962: positive regulation of development, heterochronic4.92E-03
85GO:0006139: nucleobase-containing compound metabolic process4.92E-03
86GO:0042793: transcription from plastid promoter4.92E-03
87GO:0006559: L-phenylalanine catabolic process4.92E-03
88GO:0006206: pyrimidine nucleobase metabolic process4.92E-03
89GO:0009117: nucleotide metabolic process4.92E-03
90GO:0009635: response to herbicide4.92E-03
91GO:0010182: sugar mediated signaling pathway5.20E-03
92GO:2000067: regulation of root morphogenesis5.94E-03
93GO:0042372: phylloquinone biosynthetic process5.94E-03
94GO:0009082: branched-chain amino acid biosynthetic process5.94E-03
95GO:2000033: regulation of seed dormancy process5.94E-03
96GO:0046654: tetrahydrofolate biosynthetic process5.94E-03
97GO:0009099: valine biosynthetic process5.94E-03
98GO:0030488: tRNA methylation5.94E-03
99GO:0080086: stamen filament development5.94E-03
100GO:0048510: regulation of timing of transition from vegetative to reproductive phase6.43E-03
101GO:0006468: protein phosphorylation6.98E-03
102GO:0010050: vegetative phase change7.03E-03
103GO:0048437: floral organ development7.03E-03
104GO:0010444: guard mother cell differentiation7.03E-03
105GO:0006400: tRNA modification7.03E-03
106GO:0030307: positive regulation of cell growth7.03E-03
107GO:0010161: red light signaling pathway7.03E-03
108GO:0009610: response to symbiotic fungus7.03E-03
109GO:0016310: phosphorylation7.22E-03
110GO:0009740: gibberellic acid mediated signaling pathway7.51E-03
111GO:0006402: mRNA catabolic process8.18E-03
112GO:0010439: regulation of glucosinolate biosynthetic process8.18E-03
113GO:0009850: auxin metabolic process8.18E-03
114GO:0006353: DNA-templated transcription, termination8.18E-03
115GO:0009704: de-etiolation8.18E-03
116GO:0032875: regulation of DNA endoreduplication8.18E-03
117GO:0010099: regulation of photomorphogenesis9.38E-03
118GO:0071482: cellular response to light stimulus9.38E-03
119GO:0010497: plasmodesmata-mediated intercellular transport9.38E-03
120GO:0009097: isoleucine biosynthetic process9.38E-03
121GO:0010100: negative regulation of photomorphogenesis9.38E-03
122GO:0032544: plastid translation9.38E-03
123GO:0010029: regulation of seed germination9.87E-03
124GO:0009051: pentose-phosphate shunt, oxidative branch1.07E-02
125GO:0051865: protein autoubiquitination1.07E-02
126GO:0010206: photosystem II repair1.07E-02
127GO:2000024: regulation of leaf development1.07E-02
128GO:0006783: heme biosynthetic process1.07E-02
129GO:0000373: Group II intron splicing1.07E-02
130GO:0006189: 'de novo' IMP biosynthetic process1.07E-02
131GO:0010411: xyloglucan metabolic process1.10E-02
132GO:0042761: very long-chain fatty acid biosynthetic process1.20E-02
133GO:1900865: chloroplast RNA modification1.20E-02
134GO:0008202: steroid metabolic process1.20E-02
135GO:0010162: seed dormancy process1.34E-02
136GO:0009299: mRNA transcription1.34E-02
137GO:0006535: cysteine biosynthetic process from serine1.34E-02
138GO:0045036: protein targeting to chloroplast1.34E-02
139GO:0009773: photosynthetic electron transport in photosystem I1.48E-02
140GO:0009682: induced systemic resistance1.48E-02
141GO:0006415: translational termination1.48E-02
142GO:1903507: negative regulation of nucleic acid-templated transcription1.48E-02
143GO:0006352: DNA-templated transcription, initiation1.48E-02
144GO:0048229: gametophyte development1.48E-02
145GO:0010582: floral meristem determinacy1.63E-02
146GO:0006839: mitochondrial transport1.77E-02
147GO:2000012: regulation of auxin polar transport1.79E-02
148GO:0030048: actin filament-based movement1.79E-02
149GO:0009785: blue light signaling pathway1.79E-02
150GO:0010628: positive regulation of gene expression1.79E-02
151GO:0006006: glucose metabolic process1.79E-02
152GO:0030036: actin cytoskeleton organization1.79E-02
153GO:0010075: regulation of meristem growth1.79E-02
154GO:0009725: response to hormone1.79E-02
155GO:0006631: fatty acid metabolic process1.85E-02
156GO:0010020: chloroplast fission1.95E-02
157GO:0009934: regulation of meristem structural organization1.95E-02
158GO:0042546: cell wall biogenesis2.09E-02
159GO:0010039: response to iron ion2.12E-02
160GO:0090351: seedling development2.12E-02
161GO:0010030: positive regulation of seed germination2.12E-02
162GO:0070588: calcium ion transmembrane transport2.12E-02
163GO:0010025: wax biosynthetic process2.29E-02
164GO:0006071: glycerol metabolic process2.29E-02
165GO:0019344: cysteine biosynthetic process2.46E-02
166GO:0009944: polarity specification of adaxial/abaxial axis2.46E-02
167GO:0007010: cytoskeleton organization2.46E-02
168GO:0010187: negative regulation of seed germination2.46E-02
169GO:0051017: actin filament bundle assembly2.46E-02
170GO:0005992: trehalose biosynthetic process2.46E-02
171GO:0006874: cellular calcium ion homeostasis2.64E-02
172GO:0009826: unidimensional cell growth2.70E-02
173GO:0016998: cell wall macromolecule catabolic process2.82E-02
174GO:0035428: hexose transmembrane transport3.01E-02
175GO:0006730: one-carbon metabolic process3.01E-02
176GO:0080092: regulation of pollen tube growth3.01E-02
177GO:0009693: ethylene biosynthetic process3.20E-02
178GO:0010082: regulation of root meristem growth3.20E-02
179GO:0009686: gibberellin biosynthetic process3.20E-02
180GO:0009625: response to insect3.20E-02
181GO:0010091: trichome branching3.40E-02
182GO:0019722: calcium-mediated signaling3.40E-02
183GO:0042127: regulation of cell proliferation3.40E-02
184GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.60E-02
185GO:0070417: cellular response to cold3.60E-02
186GO:0009735: response to cytokinin3.71E-02
187GO:0048653: anther development3.81E-02
188GO:0042631: cellular response to water deprivation3.81E-02
189GO:0008033: tRNA processing3.81E-02
190GO:0034220: ion transmembrane transport3.81E-02
191GO:0010087: phloem or xylem histogenesis3.81E-02
192GO:0009624: response to nematode3.84E-02
193GO:0046323: glucose import4.01E-02
194GO:0009741: response to brassinosteroid4.01E-02
195GO:0009738: abscisic acid-activated signaling pathway4.02E-02
196GO:0009742: brassinosteroid mediated signaling pathway4.07E-02
197GO:0007018: microtubule-based movement4.23E-02
198GO:0055072: iron ion homeostasis4.44E-02
199GO:0010583: response to cyclopentenone4.88E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0019808: polyamine binding0.00E+00
5GO:0019148: D-cysteine desulfhydrase activity0.00E+00
6GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
7GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
8GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0015276: ligand-gated ion channel activity0.00E+00
11GO:0004056: argininosuccinate lyase activity0.00E+00
12GO:1990534: thermospermine oxidase activity0.00E+00
13GO:0005089: Rho guanyl-nucleotide exchange factor activity9.09E-05
14GO:0016773: phosphotransferase activity, alcohol group as acceptor1.82E-04
15GO:0008066: glutamate receptor activity4.53E-04
16GO:0005290: L-histidine transmembrane transporter activity4.53E-04
17GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.53E-04
18GO:0003984: acetolactate synthase activity4.53E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.53E-04
20GO:0010313: phytochrome binding4.53E-04
21GO:0050139: nicotinate-N-glucosyltransferase activity4.53E-04
22GO:0003727: single-stranded RNA binding4.79E-04
23GO:0102083: 7,8-dihydromonapterin aldolase activity9.79E-04
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.79E-04
25GO:0000064: L-ornithine transmembrane transporter activity9.79E-04
26GO:0004150: dihydroneopterin aldolase activity9.79E-04
27GO:0050017: L-3-cyanoalanine synthase activity9.79E-04
28GO:0017118: lipoyltransferase activity9.79E-04
29GO:0043425: bHLH transcription factor binding9.79E-04
30GO:0003938: IMP dehydrogenase activity9.79E-04
31GO:0070330: aromatase activity1.59E-03
32GO:0045548: phenylalanine ammonia-lyase activity1.59E-03
33GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.59E-03
34GO:0005262: calcium channel activity1.67E-03
35GO:0015189: L-lysine transmembrane transporter activity2.31E-03
36GO:0017089: glycolipid transporter activity2.31E-03
37GO:0000254: C-4 methylsterol oxidase activity2.31E-03
38GO:0035529: NADH pyrophosphatase activity2.31E-03
39GO:0015181: arginine transmembrane transporter activity2.31E-03
40GO:0016985: mannan endo-1,4-beta-mannosidase activity3.10E-03
41GO:0016987: sigma factor activity3.10E-03
42GO:0001053: plastid sigma factor activity3.10E-03
43GO:0004845: uracil phosphoribosyltransferase activity3.10E-03
44GO:0004737: pyruvate decarboxylase activity3.10E-03
45GO:0004345: glucose-6-phosphate dehydrogenase activity3.10E-03
46GO:0008409: 5'-3' exonuclease activity3.10E-03
47GO:0051861: glycolipid binding3.10E-03
48GO:0043621: protein self-association3.90E-03
49GO:0010294: abscisic acid glucosyltransferase activity3.98E-03
50GO:0018685: alkane 1-monooxygenase activity3.98E-03
51GO:0004709: MAP kinase kinase kinase activity4.92E-03
52GO:0016208: AMP binding4.92E-03
53GO:0016462: pyrophosphatase activity4.92E-03
54GO:0008519: ammonium transmembrane transporter activity4.92E-03
55GO:0030976: thiamine pyrophosphate binding4.92E-03
56GO:2001070: starch binding4.92E-03
57GO:0008195: phosphatidate phosphatase activity5.94E-03
58GO:0004849: uridine kinase activity5.94E-03
59GO:0003730: mRNA 3'-UTR binding5.94E-03
60GO:0004124: cysteine synthase activity5.94E-03
61GO:0016301: kinase activity6.03E-03
62GO:0016762: xyloglucan:xyloglucosyl transferase activity6.43E-03
63GO:0003872: 6-phosphofructokinase activity7.03E-03
64GO:0008142: oxysterol binding9.38E-03
65GO:0008889: glycerophosphodiester phosphodiesterase activity1.07E-02
66GO:0003747: translation release factor activity1.07E-02
67GO:0016798: hydrolase activity, acting on glycosyl bonds1.10E-02
68GO:0004805: trehalose-phosphatase activity1.34E-02
69GO:0004672: protein kinase activity1.41E-02
70GO:0004871: signal transducer activity1.42E-02
71GO:0008794: arsenate reductase (glutaredoxin) activity1.48E-02
72GO:0000976: transcription regulatory region sequence-specific DNA binding1.63E-02
73GO:0004712: protein serine/threonine/tyrosine kinase activity1.70E-02
74GO:0009982: pseudouridine synthase activity1.79E-02
75GO:0003725: double-stranded RNA binding1.79E-02
76GO:0004089: carbonate dehydratase activity1.79E-02
77GO:0005515: protein binding1.91E-02
78GO:0008131: primary amine oxidase activity1.95E-02
79GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.95E-02
80GO:0005217: intracellular ligand-gated ion channel activity2.12E-02
81GO:0004970: ionotropic glutamate receptor activity2.12E-02
82GO:0051537: 2 iron, 2 sulfur cluster binding2.17E-02
83GO:0003887: DNA-directed DNA polymerase activity2.29E-02
84GO:0003714: transcription corepressor activity2.46E-02
85GO:0005345: purine nucleobase transmembrane transporter activity2.64E-02
86GO:0015079: potassium ion transmembrane transporter activity2.64E-02
87GO:0003690: double-stranded DNA binding2.80E-02
88GO:0033612: receptor serine/threonine kinase binding2.82E-02
89GO:0019706: protein-cysteine S-palmitoyltransferase activity2.82E-02
90GO:0030570: pectate lyase activity3.20E-02
91GO:0008514: organic anion transmembrane transporter activity3.40E-02
92GO:0080044: quercetin 7-O-glucosyltransferase activity3.51E-02
93GO:0080043: quercetin 3-O-glucosyltransferase activity3.51E-02
94GO:0016874: ligase activity3.62E-02
95GO:0004674: protein serine/threonine kinase activity3.89E-02
96GO:0008536: Ran GTPase binding4.01E-02
97GO:0052689: carboxylic ester hydrolase activity4.18E-02
98GO:0005355: glucose transmembrane transporter activity4.23E-02
99GO:0019843: rRNA binding4.80E-02
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Gene type



Gene DE type