GO Enrichment Analysis of Co-expressed Genes with
AT3G48680
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 2 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 3 | GO:0009583: detection of light stimulus | 0.00E+00 |
| 4 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 5 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 6 | GO:0071000: response to magnetism | 0.00E+00 |
| 7 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 8 | GO:0009638: phototropism | 7.16E-06 |
| 9 | GO:0046283: anthocyanin-containing compound metabolic process | 4.37E-05 |
| 10 | GO:1902183: regulation of shoot apical meristem development | 4.37E-05 |
| 11 | GO:0010158: abaxial cell fate specification | 4.37E-05 |
| 12 | GO:0007623: circadian rhythm | 7.05E-05 |
| 13 | GO:0009585: red, far-red light phototransduction | 1.23E-04 |
| 14 | GO:0072387: flavin adenine dinucleotide metabolic process | 1.91E-04 |
| 15 | GO:0006264: mitochondrial DNA replication | 1.91E-04 |
| 16 | GO:0033259: plastid DNA replication | 1.91E-04 |
| 17 | GO:0051247: positive regulation of protein metabolic process | 1.91E-04 |
| 18 | GO:2000905: negative regulation of starch metabolic process | 1.91E-04 |
| 19 | GO:0090610: bundle sheath cell fate specification | 1.91E-04 |
| 20 | GO:0010450: inflorescence meristem growth | 1.91E-04 |
| 21 | GO:0051171: regulation of nitrogen compound metabolic process | 1.91E-04 |
| 22 | GO:0009740: gibberellic acid mediated signaling pathway | 2.05E-04 |
| 23 | GO:2000024: regulation of leaf development | 2.33E-04 |
| 24 | GO:0048573: photoperiodism, flowering | 3.36E-04 |
| 25 | GO:0099402: plant organ development | 4.29E-04 |
| 26 | GO:0010343: singlet oxygen-mediated programmed cell death | 4.29E-04 |
| 27 | GO:1901529: positive regulation of anion channel activity | 4.29E-04 |
| 28 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 4.29E-04 |
| 29 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.29E-04 |
| 30 | GO:1900871: chloroplast mRNA modification | 4.29E-04 |
| 31 | GO:0010617: circadian regulation of calcium ion oscillation | 4.29E-04 |
| 32 | GO:0051604: protein maturation | 6.99E-04 |
| 33 | GO:0016050: vesicle organization | 6.99E-04 |
| 34 | GO:0045165: cell fate commitment | 6.99E-04 |
| 35 | GO:0051127: positive regulation of actin nucleation | 6.99E-04 |
| 36 | GO:1902448: positive regulation of shade avoidance | 6.99E-04 |
| 37 | GO:0070475: rRNA base methylation | 6.99E-04 |
| 38 | GO:1901672: positive regulation of systemic acquired resistance | 6.99E-04 |
| 39 | GO:0048586: regulation of long-day photoperiodism, flowering | 6.99E-04 |
| 40 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.65E-04 |
| 41 | GO:0010187: negative regulation of seed germination | 7.65E-04 |
| 42 | GO:0006168: adenine salvage | 9.97E-04 |
| 43 | GO:0009067: aspartate family amino acid biosynthetic process | 9.97E-04 |
| 44 | GO:0006166: purine ribonucleoside salvage | 9.97E-04 |
| 45 | GO:0034059: response to anoxia | 9.97E-04 |
| 46 | GO:0006164: purine nucleotide biosynthetic process | 9.97E-04 |
| 47 | GO:0009963: positive regulation of flavonoid biosynthetic process | 9.97E-04 |
| 48 | GO:0009647: skotomorphogenesis | 9.97E-04 |
| 49 | GO:0048645: animal organ formation | 9.97E-04 |
| 50 | GO:0010255: glucose mediated signaling pathway | 9.97E-04 |
| 51 | GO:1901332: negative regulation of lateral root development | 9.97E-04 |
| 52 | GO:1902347: response to strigolactone | 1.32E-03 |
| 53 | GO:2000306: positive regulation of photomorphogenesis | 1.32E-03 |
| 54 | GO:0009649: entrainment of circadian clock | 1.32E-03 |
| 55 | GO:0048367: shoot system development | 1.33E-03 |
| 56 | GO:0010154: fruit development | 1.48E-03 |
| 57 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.68E-03 |
| 58 | GO:0044209: AMP salvage | 1.68E-03 |
| 59 | GO:0034052: positive regulation of plant-type hypersensitive response | 1.68E-03 |
| 60 | GO:0006544: glycine metabolic process | 1.68E-03 |
| 61 | GO:0010117: photoprotection | 1.68E-03 |
| 62 | GO:0010583: response to cyclopentenone | 1.95E-03 |
| 63 | GO:0006561: proline biosynthetic process | 2.07E-03 |
| 64 | GO:0006563: L-serine metabolic process | 2.07E-03 |
| 65 | GO:0009959: negative gravitropism | 2.07E-03 |
| 66 | GO:0045962: positive regulation of development, heterochronic | 2.07E-03 |
| 67 | GO:1901371: regulation of leaf morphogenesis | 2.07E-03 |
| 68 | GO:0060918: auxin transport | 2.07E-03 |
| 69 | GO:0000741: karyogamy | 2.07E-03 |
| 70 | GO:1902456: regulation of stomatal opening | 2.07E-03 |
| 71 | GO:0010189: vitamin E biosynthetic process | 2.49E-03 |
| 72 | GO:0009088: threonine biosynthetic process | 2.49E-03 |
| 73 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.49E-03 |
| 74 | GO:0009648: photoperiodism | 2.49E-03 |
| 75 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.49E-03 |
| 76 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 2.49E-03 |
| 77 | GO:0042372: phylloquinone biosynthetic process | 2.49E-03 |
| 78 | GO:0048280: vesicle fusion with Golgi apparatus | 2.49E-03 |
| 79 | GO:0010029: regulation of seed germination | 2.78E-03 |
| 80 | GO:0051510: regulation of unidimensional cell growth | 2.93E-03 |
| 81 | GO:0010161: red light signaling pathway | 2.93E-03 |
| 82 | GO:0010078: maintenance of root meristem identity | 3.40E-03 |
| 83 | GO:0043068: positive regulation of programmed cell death | 3.40E-03 |
| 84 | GO:0009690: cytokinin metabolic process | 3.40E-03 |
| 85 | GO:0006997: nucleus organization | 3.88E-03 |
| 86 | GO:0043562: cellular response to nitrogen levels | 3.88E-03 |
| 87 | GO:0010093: specification of floral organ identity | 3.88E-03 |
| 88 | GO:0010099: regulation of photomorphogenesis | 3.88E-03 |
| 89 | GO:0010100: negative regulation of photomorphogenesis | 3.88E-03 |
| 90 | GO:0006783: heme biosynthetic process | 4.40E-03 |
| 91 | GO:0006189: 'de novo' IMP biosynthetic process | 4.40E-03 |
| 92 | GO:0071577: zinc II ion transmembrane transport | 4.93E-03 |
| 93 | GO:1900426: positive regulation of defense response to bacterium | 4.93E-03 |
| 94 | GO:0010018: far-red light signaling pathway | 4.93E-03 |
| 95 | GO:1900865: chloroplast RNA modification | 4.93E-03 |
| 96 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.93E-03 |
| 97 | GO:0009688: abscisic acid biosynthetic process | 5.48E-03 |
| 98 | GO:0009641: shade avoidance | 5.48E-03 |
| 99 | GO:0010192: mucilage biosynthetic process | 5.48E-03 |
| 100 | GO:0006896: Golgi to vacuole transport | 5.48E-03 |
| 101 | GO:0009299: mRNA transcription | 5.48E-03 |
| 102 | GO:0006535: cysteine biosynthetic process from serine | 5.48E-03 |
| 103 | GO:0009640: photomorphogenesis | 5.57E-03 |
| 104 | GO:0007165: signal transduction | 5.99E-03 |
| 105 | GO:0009644: response to high light intensity | 6.02E-03 |
| 106 | GO:0009750: response to fructose | 6.06E-03 |
| 107 | GO:0009684: indoleacetic acid biosynthetic process | 6.06E-03 |
| 108 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.06E-03 |
| 109 | GO:0009416: response to light stimulus | 6.27E-03 |
| 110 | GO:0048366: leaf development | 6.91E-03 |
| 111 | GO:0030036: actin cytoskeleton organization | 7.28E-03 |
| 112 | GO:0010075: regulation of meristem growth | 7.28E-03 |
| 113 | GO:0009725: response to hormone | 7.28E-03 |
| 114 | GO:0010588: cotyledon vascular tissue pattern formation | 7.28E-03 |
| 115 | GO:0009785: blue light signaling pathway | 7.28E-03 |
| 116 | GO:0048467: gynoecium development | 7.91E-03 |
| 117 | GO:0009933: meristem structural organization | 7.91E-03 |
| 118 | GO:0090351: seedling development | 8.57E-03 |
| 119 | GO:0010030: positive regulation of seed germination | 8.57E-03 |
| 120 | GO:0009833: plant-type primary cell wall biogenesis | 9.25E-03 |
| 121 | GO:0042753: positive regulation of circadian rhythm | 9.25E-03 |
| 122 | GO:2000377: regulation of reactive oxygen species metabolic process | 9.94E-03 |
| 123 | GO:0005992: trehalose biosynthetic process | 9.94E-03 |
| 124 | GO:0019344: cysteine biosynthetic process | 9.94E-03 |
| 125 | GO:0000027: ribosomal large subunit assembly | 9.94E-03 |
| 126 | GO:0007010: cytoskeleton organization | 9.94E-03 |
| 127 | GO:0009742: brassinosteroid mediated signaling pathway | 1.13E-02 |
| 128 | GO:0010017: red or far-red light signaling pathway | 1.21E-02 |
| 129 | GO:0009814: defense response, incompatible interaction | 1.21E-02 |
| 130 | GO:0035428: hexose transmembrane transport | 1.21E-02 |
| 131 | GO:0009686: gibberellin biosynthetic process | 1.29E-02 |
| 132 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.45E-02 |
| 133 | GO:0042147: retrograde transport, endosome to Golgi | 1.45E-02 |
| 134 | GO:0070417: cellular response to cold | 1.45E-02 |
| 135 | GO:0000271: polysaccharide biosynthetic process | 1.53E-02 |
| 136 | GO:0080022: primary root development | 1.53E-02 |
| 137 | GO:0010087: phloem or xylem histogenesis | 1.53E-02 |
| 138 | GO:0010118: stomatal movement | 1.53E-02 |
| 139 | GO:0042631: cellular response to water deprivation | 1.53E-02 |
| 140 | GO:0042335: cuticle development | 1.53E-02 |
| 141 | GO:0010197: polar nucleus fusion | 1.62E-02 |
| 142 | GO:0010182: sugar mediated signaling pathway | 1.62E-02 |
| 143 | GO:0046323: glucose import | 1.62E-02 |
| 144 | GO:0045489: pectin biosynthetic process | 1.62E-02 |
| 145 | GO:0009958: positive gravitropism | 1.62E-02 |
| 146 | GO:0007018: microtubule-based movement | 1.70E-02 |
| 147 | GO:0042752: regulation of circadian rhythm | 1.70E-02 |
| 148 | GO:0009646: response to absence of light | 1.70E-02 |
| 149 | GO:0006355: regulation of transcription, DNA-templated | 1.76E-02 |
| 150 | GO:0040008: regulation of growth | 1.77E-02 |
| 151 | GO:0008654: phospholipid biosynthetic process | 1.79E-02 |
| 152 | GO:0009851: auxin biosynthetic process | 1.79E-02 |
| 153 | GO:0006623: protein targeting to vacuole | 1.79E-02 |
| 154 | GO:0048825: cotyledon development | 1.79E-02 |
| 155 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.88E-02 |
| 156 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.88E-02 |
| 157 | GO:0032502: developmental process | 1.97E-02 |
| 158 | GO:0007264: small GTPase mediated signal transduction | 1.97E-02 |
| 159 | GO:0030154: cell differentiation | 2.07E-02 |
| 160 | GO:0009639: response to red or far red light | 2.15E-02 |
| 161 | GO:0006464: cellular protein modification process | 2.15E-02 |
| 162 | GO:0009733: response to auxin | 2.16E-02 |
| 163 | GO:0010468: regulation of gene expression | 2.22E-02 |
| 164 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 2.54E-02 |
| 165 | GO:0015995: chlorophyll biosynthetic process | 2.74E-02 |
| 166 | GO:0006888: ER to Golgi vesicle-mediated transport | 2.74E-02 |
| 167 | GO:0018298: protein-chromophore linkage | 2.95E-02 |
| 168 | GO:0030244: cellulose biosynthetic process | 2.95E-02 |
| 169 | GO:0000160: phosphorelay signal transduction system | 3.05E-02 |
| 170 | GO:0009832: plant-type cell wall biogenesis | 3.05E-02 |
| 171 | GO:0010218: response to far red light | 3.16E-02 |
| 172 | GO:0009910: negative regulation of flower development | 3.27E-02 |
| 173 | GO:0048527: lateral root development | 3.27E-02 |
| 174 | GO:0010119: regulation of stomatal movement | 3.27E-02 |
| 175 | GO:0009723: response to ethylene | 3.32E-02 |
| 176 | GO:0016051: carbohydrate biosynthetic process | 3.49E-02 |
| 177 | GO:0009637: response to blue light | 3.49E-02 |
| 178 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.68E-02 |
| 179 | GO:0046777: protein autophosphorylation | 3.81E-02 |
| 180 | GO:0006897: endocytosis | 3.94E-02 |
| 181 | GO:0006631: fatty acid metabolic process | 3.94E-02 |
| 182 | GO:0010114: response to red light | 4.18E-02 |
| 183 | GO:0051707: response to other organism | 4.18E-02 |
| 184 | GO:0009965: leaf morphogenesis | 4.54E-02 |
| 185 | GO:0006260: DNA replication | 4.78E-02 |
| 186 | GO:0006812: cation transport | 4.90E-02 |
| 187 | GO:0042538: hyperosmotic salinity response | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 3 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 4 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 5 | GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity | 0.00E+00 |
| 6 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 7 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.91E-04 |
| 8 | GO:0010313: phytochrome binding | 1.91E-04 |
| 9 | GO:0050017: L-3-cyanoalanine synthase activity | 4.29E-04 |
| 10 | GO:0017118: lipoyltransferase activity | 4.29E-04 |
| 11 | GO:0043425: bHLH transcription factor binding | 4.29E-04 |
| 12 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 4.29E-04 |
| 13 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 4.29E-04 |
| 14 | GO:0042802: identical protein binding | 7.83E-04 |
| 15 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 8.37E-04 |
| 16 | GO:0009882: blue light photoreceptor activity | 9.97E-04 |
| 17 | GO:0004072: aspartate kinase activity | 9.97E-04 |
| 18 | GO:0003999: adenine phosphoribosyltransferase activity | 9.97E-04 |
| 19 | GO:0017172: cysteine dioxygenase activity | 9.97E-04 |
| 20 | GO:0008409: 5'-3' exonuclease activity | 1.32E-03 |
| 21 | GO:0080032: methyl jasmonate esterase activity | 1.32E-03 |
| 22 | GO:0001085: RNA polymerase II transcription factor binding | 1.48E-03 |
| 23 | GO:0016846: carbon-sulfur lyase activity | 1.68E-03 |
| 24 | GO:0004372: glycine hydroxymethyltransferase activity | 1.68E-03 |
| 25 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.07E-03 |
| 26 | GO:0016208: AMP binding | 2.07E-03 |
| 27 | GO:0004124: cysteine synthase activity | 2.49E-03 |
| 28 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.95E-03 |
| 29 | GO:0071949: FAD binding | 4.40E-03 |
| 30 | GO:0004805: trehalose-phosphatase activity | 5.48E-03 |
| 31 | GO:0035091: phosphatidylinositol binding | 6.02E-03 |
| 32 | GO:0008794: arsenate reductase (glutaredoxin) activity | 6.06E-03 |
| 33 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.28E-03 |
| 34 | GO:0008131: primary amine oxidase activity | 7.91E-03 |
| 35 | GO:0003887: DNA-directed DNA polymerase activity | 9.25E-03 |
| 36 | GO:0005385: zinc ion transmembrane transporter activity | 9.94E-03 |
| 37 | GO:0008324: cation transmembrane transporter activity | 1.07E-02 |
| 38 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.21E-02 |
| 39 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.29E-02 |
| 40 | GO:0030570: pectate lyase activity | 1.29E-02 |
| 41 | GO:0003727: single-stranded RNA binding | 1.37E-02 |
| 42 | GO:0008514: organic anion transmembrane transporter activity | 1.37E-02 |
| 43 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.53E-02 |
| 44 | GO:0015144: carbohydrate transmembrane transporter activity | 1.61E-02 |
| 45 | GO:0005355: glucose transmembrane transporter activity | 1.70E-02 |
| 46 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.73E-02 |
| 47 | GO:0019901: protein kinase binding | 1.79E-02 |
| 48 | GO:0005351: sugar:proton symporter activity | 1.81E-02 |
| 49 | GO:0008017: microtubule binding | 1.94E-02 |
| 50 | GO:0000156: phosphorelay response regulator activity | 2.06E-02 |
| 51 | GO:0016759: cellulose synthase activity | 2.15E-02 |
| 52 | GO:0008270: zinc ion binding | 2.15E-02 |
| 53 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.25E-02 |
| 54 | GO:0016597: amino acid binding | 2.34E-02 |
| 55 | GO:0005515: protein binding | 2.65E-02 |
| 56 | GO:0016788: hydrolase activity, acting on ester bonds | 2.93E-02 |
| 57 | GO:0003682: chromatin binding | 3.04E-02 |
| 58 | GO:0005096: GTPase activator activity | 3.05E-02 |
| 59 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.16E-02 |
| 60 | GO:0004672: protein kinase activity | 3.21E-02 |
| 61 | GO:0050897: cobalt ion binding | 3.27E-02 |
| 62 | GO:0000149: SNARE binding | 3.71E-02 |
| 63 | GO:0005484: SNAP receptor activity | 4.18E-02 |
| 64 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.41E-02 |
| 65 | GO:0043621: protein self-association | 4.41E-02 |
| 66 | GO:0004871: signal transducer activity | 4.45E-02 |