GO Enrichment Analysis of Co-expressed Genes with
AT3G48560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031129: inductive cell-cell signaling | 0.00E+00 |
| 2 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0010412: mannan metabolic process | 0.00E+00 |
| 5 | GO:0015843: methylammonium transport | 0.00E+00 |
| 6 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 7 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 8 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 9 | GO:1902265: abscisic acid homeostasis | 1.08E-04 |
| 10 | GO:0010482: regulation of epidermal cell division | 1.08E-04 |
| 11 | GO:0071028: nuclear mRNA surveillance | 1.08E-04 |
| 12 | GO:0006264: mitochondrial DNA replication | 1.08E-04 |
| 13 | GO:0033259: plastid DNA replication | 1.08E-04 |
| 14 | GO:0006177: GMP biosynthetic process | 1.08E-04 |
| 15 | GO:0010450: inflorescence meristem growth | 1.08E-04 |
| 16 | GO:2000039: regulation of trichome morphogenesis | 2.52E-04 |
| 17 | GO:0080005: photosystem stoichiometry adjustment | 2.52E-04 |
| 18 | GO:0007154: cell communication | 2.52E-04 |
| 19 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 2.52E-04 |
| 20 | GO:0042814: monopolar cell growth | 2.52E-04 |
| 21 | GO:0031648: protein destabilization | 2.52E-04 |
| 22 | GO:0071258: cellular response to gravity | 2.52E-04 |
| 23 | GO:0031125: rRNA 3'-end processing | 2.52E-04 |
| 24 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 2.52E-04 |
| 25 | GO:0034475: U4 snRNA 3'-end processing | 2.52E-04 |
| 26 | GO:0045604: regulation of epidermal cell differentiation | 4.19E-04 |
| 27 | GO:2001295: malonyl-CoA biosynthetic process | 4.19E-04 |
| 28 | GO:0045165: cell fate commitment | 4.19E-04 |
| 29 | GO:0016075: rRNA catabolic process | 4.19E-04 |
| 30 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 4.19E-04 |
| 31 | GO:0031022: nuclear migration along microfilament | 4.19E-04 |
| 32 | GO:0051127: positive regulation of actin nucleation | 4.19E-04 |
| 33 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 4.74E-04 |
| 34 | GO:0006164: purine nucleotide biosynthetic process | 6.01E-04 |
| 35 | GO:0048645: animal organ formation | 6.01E-04 |
| 36 | GO:0015696: ammonium transport | 6.01E-04 |
| 37 | GO:0048530: fruit morphogenesis | 6.01E-04 |
| 38 | GO:2001141: regulation of RNA biosynthetic process | 6.01E-04 |
| 39 | GO:0010107: potassium ion import | 7.98E-04 |
| 40 | GO:0015846: polyamine transport | 7.98E-04 |
| 41 | GO:0009902: chloroplast relocation | 7.98E-04 |
| 42 | GO:0009165: nucleotide biosynthetic process | 7.98E-04 |
| 43 | GO:0051322: anaphase | 7.98E-04 |
| 44 | GO:0046355: mannan catabolic process | 7.98E-04 |
| 45 | GO:0072488: ammonium transmembrane transport | 7.98E-04 |
| 46 | GO:0016131: brassinosteroid metabolic process | 1.01E-03 |
| 47 | GO:0098719: sodium ion import across plasma membrane | 1.01E-03 |
| 48 | GO:1902183: regulation of shoot apical meristem development | 1.01E-03 |
| 49 | GO:0010158: abaxial cell fate specification | 1.01E-03 |
| 50 | GO:0006139: nucleobase-containing compound metabolic process | 1.23E-03 |
| 51 | GO:0009117: nucleotide metabolic process | 1.23E-03 |
| 52 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.23E-03 |
| 53 | GO:0009959: negative gravitropism | 1.23E-03 |
| 54 | GO:0045962: positive regulation of development, heterochronic | 1.23E-03 |
| 55 | GO:0010029: regulation of seed germination | 1.29E-03 |
| 56 | GO:0042372: phylloquinone biosynthetic process | 1.47E-03 |
| 57 | GO:0009082: branched-chain amino acid biosynthetic process | 1.47E-03 |
| 58 | GO:0009099: valine biosynthetic process | 1.47E-03 |
| 59 | GO:0009903: chloroplast avoidance movement | 1.47E-03 |
| 60 | GO:0048444: floral organ morphogenesis | 1.47E-03 |
| 61 | GO:0009735: response to cytokinin | 1.64E-03 |
| 62 | GO:0006400: tRNA modification | 1.73E-03 |
| 63 | GO:0010161: red light signaling pathway | 1.73E-03 |
| 64 | GO:0006468: protein phosphorylation | 1.91E-03 |
| 65 | GO:0009637: response to blue light | 1.99E-03 |
| 66 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.00E-03 |
| 67 | GO:0009704: de-etiolation | 2.00E-03 |
| 68 | GO:0055075: potassium ion homeostasis | 2.00E-03 |
| 69 | GO:0009097: isoleucine biosynthetic process | 2.28E-03 |
| 70 | GO:0010100: negative regulation of photomorphogenesis | 2.28E-03 |
| 71 | GO:0010093: specification of floral organ identity | 2.28E-03 |
| 72 | GO:0010099: regulation of photomorphogenesis | 2.28E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 2.28E-03 |
| 74 | GO:0071482: cellular response to light stimulus | 2.28E-03 |
| 75 | GO:0051865: protein autoubiquitination | 2.57E-03 |
| 76 | GO:0010206: photosystem II repair | 2.57E-03 |
| 77 | GO:2000024: regulation of leaf development | 2.57E-03 |
| 78 | GO:0090333: regulation of stomatal closure | 2.57E-03 |
| 79 | GO:0006783: heme biosynthetic process | 2.57E-03 |
| 80 | GO:0000373: Group II intron splicing | 2.57E-03 |
| 81 | GO:0006189: 'de novo' IMP biosynthetic process | 2.57E-03 |
| 82 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.83E-03 |
| 83 | GO:0009965: leaf morphogenesis | 2.87E-03 |
| 84 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 2.88E-03 |
| 85 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.88E-03 |
| 86 | GO:0051453: regulation of intracellular pH | 2.88E-03 |
| 87 | GO:0009098: leucine biosynthetic process | 2.88E-03 |
| 88 | GO:0046777: protein autophosphorylation | 2.95E-03 |
| 89 | GO:0055062: phosphate ion homeostasis | 3.20E-03 |
| 90 | GO:0009299: mRNA transcription | 3.20E-03 |
| 91 | GO:1903507: negative regulation of nucleic acid-templated transcription | 3.53E-03 |
| 92 | GO:0006352: DNA-templated transcription, initiation | 3.53E-03 |
| 93 | GO:0009909: regulation of flower development | 3.79E-03 |
| 94 | GO:0048367: shoot system development | 4.18E-03 |
| 95 | GO:0030048: actin filament-based movement | 4.23E-03 |
| 96 | GO:0030036: actin cytoskeleton organization | 4.23E-03 |
| 97 | GO:0050826: response to freezing | 4.23E-03 |
| 98 | GO:0009725: response to hormone | 4.23E-03 |
| 99 | GO:0009740: gibberellic acid mediated signaling pathway | 4.58E-03 |
| 100 | GO:0009933: meristem structural organization | 4.59E-03 |
| 101 | GO:0090351: seedling development | 4.96E-03 |
| 102 | GO:0010030: positive regulation of seed germination | 4.96E-03 |
| 103 | GO:0010025: wax biosynthetic process | 5.35E-03 |
| 104 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.35E-03 |
| 105 | GO:0010187: negative regulation of seed germination | 5.75E-03 |
| 106 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.75E-03 |
| 107 | GO:0005992: trehalose biosynthetic process | 5.75E-03 |
| 108 | GO:0008299: isoprenoid biosynthetic process | 6.15E-03 |
| 109 | GO:0080092: regulation of pollen tube growth | 6.99E-03 |
| 110 | GO:0009686: gibberellin biosynthetic process | 7.42E-03 |
| 111 | GO:0006633: fatty acid biosynthetic process | 7.64E-03 |
| 112 | GO:0010091: trichome branching | 7.87E-03 |
| 113 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 8.32E-03 |
| 114 | GO:0007623: circadian rhythm | 8.39E-03 |
| 115 | GO:0000226: microtubule cytoskeleton organization | 8.79E-03 |
| 116 | GO:0042335: cuticle development | 8.79E-03 |
| 117 | GO:0042631: cellular response to water deprivation | 8.79E-03 |
| 118 | GO:0010154: fruit development | 9.26E-03 |
| 119 | GO:0008360: regulation of cell shape | 9.26E-03 |
| 120 | GO:0006885: regulation of pH | 9.26E-03 |
| 121 | GO:0010182: sugar mediated signaling pathway | 9.26E-03 |
| 122 | GO:0006814: sodium ion transport | 9.74E-03 |
| 123 | GO:0009646: response to absence of light | 9.74E-03 |
| 124 | GO:0016132: brassinosteroid biosynthetic process | 1.07E-02 |
| 125 | GO:0010583: response to cyclopentenone | 1.12E-02 |
| 126 | GO:0030163: protein catabolic process | 1.18E-02 |
| 127 | GO:0009826: unidimensional cell growth | 1.25E-02 |
| 128 | GO:0071805: potassium ion transmembrane transport | 1.28E-02 |
| 129 | GO:0009658: chloroplast organization | 1.30E-02 |
| 130 | GO:0000910: cytokinesis | 1.34E-02 |
| 131 | GO:0016126: sterol biosynthetic process | 1.39E-02 |
| 132 | GO:0015995: chlorophyll biosynthetic process | 1.56E-02 |
| 133 | GO:0010411: xyloglucan metabolic process | 1.56E-02 |
| 134 | GO:0030244: cellulose biosynthetic process | 1.68E-02 |
| 135 | GO:0000160: phosphorelay signal transduction system | 1.74E-02 |
| 136 | GO:0009813: flavonoid biosynthetic process | 1.74E-02 |
| 137 | GO:0009631: cold acclimation | 1.86E-02 |
| 138 | GO:0016310: phosphorylation | 2.12E-02 |
| 139 | GO:0006839: mitochondrial transport | 2.18E-02 |
| 140 | GO:0071555: cell wall organization | 2.25E-02 |
| 141 | GO:0010114: response to red light | 2.38E-02 |
| 142 | GO:0042546: cell wall biogenesis | 2.45E-02 |
| 143 | GO:0006855: drug transmembrane transport | 2.66E-02 |
| 144 | GO:0006260: DNA replication | 2.73E-02 |
| 145 | GO:0031347: regulation of defense response | 2.73E-02 |
| 146 | GO:0009664: plant-type cell wall organization | 2.80E-02 |
| 147 | GO:0006813: potassium ion transport | 2.94E-02 |
| 148 | GO:0009736: cytokinin-activated signaling pathway | 2.94E-02 |
| 149 | GO:0006355: regulation of transcription, DNA-templated | 3.09E-02 |
| 150 | GO:0006417: regulation of translation | 3.17E-02 |
| 151 | GO:0006096: glycolytic process | 3.32E-02 |
| 152 | GO:0009624: response to nematode | 3.78E-02 |
| 153 | GO:0006396: RNA processing | 3.86E-02 |
| 154 | GO:0009742: brassinosteroid mediated signaling pathway | 3.94E-02 |
| 155 | GO:0055114: oxidation-reduction process | 4.45E-02 |
| 156 | GO:0035556: intracellular signal transduction | 4.46E-02 |
| 157 | GO:0009845: seed germination | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 2 | GO:0019808: polyamine binding | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 5 | GO:0010313: phytochrome binding | 1.08E-04 |
| 6 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 1.08E-04 |
| 7 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.08E-04 |
| 8 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.69E-04 |
| 9 | GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.52E-04 |
| 10 | GO:0043425: bHLH transcription factor binding | 2.52E-04 |
| 11 | GO:0003938: IMP dehydrogenase activity | 2.52E-04 |
| 12 | GO:0004312: fatty acid synthase activity | 2.52E-04 |
| 13 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.52E-04 |
| 14 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.19E-04 |
| 15 | GO:0035529: NADH pyrophosphatase activity | 6.01E-04 |
| 16 | GO:0052656: L-isoleucine transaminase activity | 6.01E-04 |
| 17 | GO:0052654: L-leucine transaminase activity | 6.01E-04 |
| 18 | GO:0052655: L-valine transaminase activity | 6.01E-04 |
| 19 | GO:0000254: C-4 methylsterol oxidase activity | 6.01E-04 |
| 20 | GO:0005524: ATP binding | 7.16E-04 |
| 21 | GO:0004084: branched-chain-amino-acid transaminase activity | 7.98E-04 |
| 22 | GO:0001053: plastid sigma factor activity | 7.98E-04 |
| 23 | GO:0008409: 5'-3' exonuclease activity | 7.98E-04 |
| 24 | GO:0016985: mannan endo-1,4-beta-mannosidase activity | 7.98E-04 |
| 25 | GO:0016987: sigma factor activity | 7.98E-04 |
| 26 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.01E-03 |
| 27 | GO:0003989: acetyl-CoA carboxylase activity | 1.01E-03 |
| 28 | GO:0016208: AMP binding | 1.23E-03 |
| 29 | GO:0016462: pyrophosphatase activity | 1.23E-03 |
| 30 | GO:0015081: sodium ion transmembrane transporter activity | 1.23E-03 |
| 31 | GO:0008519: ammonium transmembrane transporter activity | 1.23E-03 |
| 32 | GO:0004709: MAP kinase kinase kinase activity | 1.23E-03 |
| 33 | GO:0003872: 6-phosphofructokinase activity | 1.73E-03 |
| 34 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.26E-03 |
| 35 | GO:0004805: trehalose-phosphatase activity | 3.20E-03 |
| 36 | GO:0015386: potassium:proton antiporter activity | 3.53E-03 |
| 37 | GO:0000175: 3'-5'-exoribonuclease activity | 4.23E-03 |
| 38 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 4.59E-03 |
| 39 | GO:0016301: kinase activity | 4.59E-03 |
| 40 | GO:0003887: DNA-directed DNA polymerase activity | 5.35E-03 |
| 41 | GO:0003714: transcription corepressor activity | 5.75E-03 |
| 42 | GO:0005528: FK506 binding | 5.75E-03 |
| 43 | GO:0015079: potassium ion transmembrane transporter activity | 6.15E-03 |
| 44 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 6.56E-03 |
| 45 | GO:0008408: 3'-5' exonuclease activity | 6.56E-03 |
| 46 | GO:0004674: protein serine/threonine kinase activity | 6.74E-03 |
| 47 | GO:0030570: pectate lyase activity | 7.42E-03 |
| 48 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 7.82E-03 |
| 49 | GO:0010181: FMN binding | 9.74E-03 |
| 50 | GO:0050662: coenzyme binding | 9.74E-03 |
| 51 | GO:0004672: protein kinase activity | 9.82E-03 |
| 52 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.07E-02 |
| 53 | GO:0042802: identical protein binding | 1.07E-02 |
| 54 | GO:0000156: phosphorelay response regulator activity | 1.18E-02 |
| 55 | GO:0015385: sodium:proton antiporter activity | 1.18E-02 |
| 56 | GO:0005200: structural constituent of cytoskeleton | 1.28E-02 |
| 57 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.31E-02 |
| 58 | GO:0030247: polysaccharide binding | 1.56E-02 |
| 59 | GO:0004721: phosphoprotein phosphatase activity | 1.56E-02 |
| 60 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.56E-02 |
| 61 | GO:0008236: serine-type peptidase activity | 1.62E-02 |
| 62 | GO:0015238: drug transmembrane transporter activity | 1.74E-02 |
| 63 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.86E-02 |
| 64 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.12E-02 |
| 65 | GO:0005506: iron ion binding | 2.20E-02 |
| 66 | GO:0043621: protein self-association | 2.52E-02 |
| 67 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.66E-02 |
| 68 | GO:0051287: NAD binding | 2.73E-02 |
| 69 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.94E-02 |
| 70 | GO:0016298: lipase activity | 3.02E-02 |
| 71 | GO:0016491: oxidoreductase activity | 3.17E-02 |
| 72 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.39E-02 |
| 73 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.55E-02 |
| 74 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.55E-02 |
| 75 | GO:0003779: actin binding | 3.70E-02 |
| 76 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 3.88E-02 |
| 77 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.52E-02 |
| 78 | GO:0016829: lyase activity | 4.69E-02 |
| 79 | GO:0004252: serine-type endopeptidase activity | 4.78E-02 |