Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G48500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:0009606: tropism0.00E+00
5GO:1903224: regulation of endodermal cell differentiation0.00E+00
6GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:0045184: establishment of protein localization0.00E+00
9GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0090615: mitochondrial mRNA processing0.00E+00
11GO:1905421: regulation of plant organ morphogenesis0.00E+00
12GO:0030155: regulation of cell adhesion0.00E+00
13GO:0009451: RNA modification2.40E-07
14GO:1901259: chloroplast rRNA processing1.04E-05
15GO:0009657: plastid organization3.44E-05
16GO:0007389: pattern specification process3.44E-05
17GO:0009734: auxin-activated signaling pathway5.37E-05
18GO:1900865: chloroplast RNA modification6.17E-05
19GO:0016556: mRNA modification7.23E-05
20GO:0010239: chloroplast mRNA processing7.23E-05
21GO:0009926: auxin polar transport9.20E-05
22GO:2000038: regulation of stomatal complex development1.26E-04
23GO:0009913: epidermal cell differentiation2.75E-04
24GO:0042793: transcription from plastid promoter2.75E-04
25GO:0034972: histone H3-R26 methylation4.73E-04
26GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.73E-04
27GO:0070509: calcium ion import4.73E-04
28GO:0090558: plant epidermis development4.73E-04
29GO:0010063: positive regulation of trichoblast fate specification4.73E-04
30GO:0010480: microsporocyte differentiation4.73E-04
31GO:0034971: histone H3-R17 methylation4.73E-04
32GO:0035987: endodermal cell differentiation4.73E-04
33GO:0006436: tryptophanyl-tRNA aminoacylation4.73E-04
34GO:0034757: negative regulation of iron ion transport4.73E-04
35GO:0034970: histone H3-R2 methylation4.73E-04
36GO:0042659: regulation of cell fate specification4.73E-04
37GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.73E-04
38GO:0048437: floral organ development4.74E-04
39GO:0046620: regulation of organ growth5.91E-04
40GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.91E-04
41GO:0000902: cell morphogenesis8.62E-04
42GO:0031425: chloroplast RNA processing1.01E-03
43GO:0010254: nectary development1.02E-03
44GO:1902326: positive regulation of chlorophyll biosynthetic process1.02E-03
45GO:1900871: chloroplast mRNA modification1.02E-03
46GO:0070981: L-asparagine biosynthetic process1.02E-03
47GO:0010271: regulation of chlorophyll catabolic process1.02E-03
48GO:0010434: bract formation1.02E-03
49GO:0018026: peptidyl-lysine monomethylation1.02E-03
50GO:0009662: etioplast organization1.02E-03
51GO:1900033: negative regulation of trichome patterning1.02E-03
52GO:0048439: flower morphogenesis1.02E-03
53GO:0009220: pyrimidine ribonucleotide biosynthetic process1.02E-03
54GO:1904143: positive regulation of carotenoid biosynthetic process1.02E-03
55GO:0080009: mRNA methylation1.02E-03
56GO:0006529: asparagine biosynthetic process1.02E-03
57GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.02E-03
58GO:2000123: positive regulation of stomatal complex development1.02E-03
59GO:0010252: auxin homeostasis1.16E-03
60GO:0009416: response to light stimulus1.53E-03
61GO:0045037: protein import into chloroplast stroma1.56E-03
62GO:0010582: floral meristem determinacy1.56E-03
63GO:0080117: secondary growth1.66E-03
64GO:0006954: inflammatory response1.66E-03
65GO:0006518: peptide metabolic process1.66E-03
66GO:0042780: tRNA 3'-end processing1.66E-03
67GO:0009954: proximal/distal pattern formation1.66E-03
68GO:0009432: SOS response1.66E-03
69GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.66E-03
70GO:0045910: negative regulation of DNA recombination1.66E-03
71GO:0048281: inflorescence morphogenesis1.66E-03
72GO:0090708: specification of plant organ axis polarity1.66E-03
73GO:0009658: chloroplast organization1.99E-03
74GO:0044211: CTP salvage2.41E-03
75GO:0019048: modulation by virus of host morphology or physiology2.41E-03
76GO:0046739: transport of virus in multicellular host2.41E-03
77GO:2000904: regulation of starch metabolic process2.41E-03
78GO:0031048: chromatin silencing by small RNA2.41E-03
79GO:0010148: transpiration2.41E-03
80GO:0000730: DNA recombinase assembly2.41E-03
81GO:1902476: chloride transmembrane transport2.41E-03
82GO:0010071: root meristem specification2.41E-03
83GO:0051513: regulation of monopolar cell growth2.41E-03
84GO:0009944: polarity specification of adaxial/abaxial axis2.78E-03
85GO:0006418: tRNA aminoacylation for protein translation3.06E-03
86GO:0051302: regulation of cell division3.06E-03
87GO:0009790: embryo development3.18E-03
88GO:0030104: water homeostasis3.24E-03
89GO:0051567: histone H3-K9 methylation3.24E-03
90GO:0044205: 'de novo' UMP biosynthetic process3.24E-03
91GO:0044206: UMP salvage3.24E-03
92GO:0006479: protein methylation3.24E-03
93GO:0048629: trichome patterning3.24E-03
94GO:1900864: mitochondrial RNA modification3.24E-03
95GO:0042274: ribosomal small subunit biogenesis3.24E-03
96GO:0009733: response to auxin3.29E-03
97GO:0016998: cell wall macromolecule catabolic process3.37E-03
98GO:0040008: regulation of growth3.83E-03
99GO:0010082: regulation of root meristem growth4.03E-03
100GO:0001944: vasculature development4.03E-03
101GO:0030308: negative regulation of cell growth4.15E-03
102GO:0010375: stomatal complex patterning4.15E-03
103GO:0048497: maintenance of floral organ identity4.15E-03
104GO:0010158: abaxial cell fate specification4.15E-03
105GO:0032876: negative regulation of DNA endoreduplication4.15E-03
106GO:0006655: phosphatidylglycerol biosynthetic process5.14E-03
107GO:0016554: cytidine to uridine editing5.14E-03
108GO:0048831: regulation of shoot system development5.14E-03
109GO:0010315: auxin efflux5.14E-03
110GO:0006206: pyrimidine nucleobase metabolic process5.14E-03
111GO:0018258: protein O-linked glycosylation via hydroxyproline5.14E-03
112GO:0016458: gene silencing5.14E-03
113GO:0050665: hydrogen peroxide biosynthetic process5.14E-03
114GO:0010405: arabinogalactan protein metabolic process5.14E-03
115GO:0042549: photosystem II stabilization5.14E-03
116GO:0009959: negative gravitropism5.14E-03
117GO:0009646: response to absence of light5.96E-03
118GO:0010067: procambium histogenesis6.21E-03
119GO:0009082: branched-chain amino acid biosynthetic process6.21E-03
120GO:0017148: negative regulation of translation6.21E-03
121GO:0009942: longitudinal axis specification6.21E-03
122GO:0048509: regulation of meristem development6.21E-03
123GO:0009099: valine biosynthetic process6.21E-03
124GO:0030488: tRNA methylation6.21E-03
125GO:0009854: oxidative photosynthetic carbon pathway6.21E-03
126GO:2000037: regulation of stomatal complex patterning6.21E-03
127GO:2000067: regulation of root morphogenesis6.21E-03
128GO:0009955: adaxial/abaxial pattern specification6.21E-03
129GO:0048825: cotyledon development6.40E-03
130GO:0010583: response to cyclopentenone7.32E-03
131GO:0009793: embryo development ending in seed dormancy7.32E-03
132GO:0032502: developmental process7.32E-03
133GO:0006821: chloride transport7.34E-03
134GO:0070370: cellular heat acclimation7.34E-03
135GO:0010050: vegetative phase change7.34E-03
136GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.34E-03
137GO:0010103: stomatal complex morphogenesis7.34E-03
138GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.34E-03
139GO:0006955: immune response7.34E-03
140GO:0048528: post-embryonic root development7.34E-03
141GO:0042148: strand invasion7.34E-03
142GO:0001522: pseudouridine synthesis8.55E-03
143GO:0009850: auxin metabolic process8.55E-03
144GO:0030162: regulation of proteolysis8.55E-03
145GO:0006353: DNA-templated transcription, termination8.55E-03
146GO:0048766: root hair initiation8.55E-03
147GO:0070413: trehalose metabolism in response to stress8.55E-03
148GO:0055075: potassium ion homeostasis8.55E-03
149GO:0009827: plant-type cell wall modification9.82E-03
150GO:0010212: response to ionizing radiation9.82E-03
151GO:0010497: plasmodesmata-mediated intercellular transport9.82E-03
152GO:0009097: isoleucine biosynthetic process9.82E-03
153GO:0010204: defense response signaling pathway, resistance gene-independent9.82E-03
154GO:0001558: regulation of cell growth9.82E-03
155GO:0080167: response to karrikin1.11E-02
156GO:0006098: pentose-phosphate shunt1.12E-02
157GO:0000373: Group II intron splicing1.12E-02
158GO:0010411: xyloglucan metabolic process1.17E-02
159GO:2000280: regulation of root development1.25E-02
160GO:0009638: phototropism1.25E-02
161GO:0048481: plant ovule development1.30E-02
162GO:0000160: phosphorelay signal transduction system1.37E-02
163GO:0006535: cysteine biosynthetic process from serine1.40E-02
164GO:0030422: production of siRNA involved in RNA interference1.40E-02
165GO:0045036: protein targeting to chloroplast1.40E-02
166GO:0009641: shade avoidance1.40E-02
167GO:0006298: mismatch repair1.40E-02
168GO:0006259: DNA metabolic process1.40E-02
169GO:0006265: DNA topological change1.55E-02
170GO:0009089: lysine biosynthetic process via diaminopimelate1.55E-02
171GO:0048229: gametophyte development1.55E-02
172GO:0016024: CDP-diacylglycerol biosynthetic process1.71E-02
173GO:0008361: regulation of cell size1.71E-02
174GO:0006312: mitotic recombination1.71E-02
175GO:0007623: circadian rhythm1.77E-02
176GO:0009785: blue light signaling pathway1.87E-02
177GO:0009691: cytokinin biosynthetic process1.87E-02
178GO:0010075: regulation of meristem growth1.87E-02
179GO:0006094: gluconeogenesis1.87E-02
180GO:0009767: photosynthetic electron transport chain1.87E-02
181GO:0010207: photosystem II assembly2.04E-02
182GO:0006541: glutamine metabolic process2.04E-02
183GO:0010223: secondary shoot formation2.04E-02
184GO:0009934: regulation of meristem structural organization2.04E-02
185GO:0048364: root development2.13E-02
186GO:0080188: RNA-directed DNA methylation2.21E-02
187GO:0070588: calcium ion transmembrane transport2.21E-02
188GO:0042546: cell wall biogenesis2.22E-02
189GO:0006833: water transport2.39E-02
190GO:0080147: root hair cell development2.57E-02
191GO:0005992: trehalose biosynthetic process2.57E-02
192GO:0019344: cysteine biosynthetic process2.57E-02
193GO:0009116: nucleoside metabolic process2.57E-02
194GO:0009664: plant-type cell wall organization2.68E-02
195GO:0006825: copper ion transport2.76E-02
196GO:0009736: cytokinin-activated signaling pathway2.88E-02
197GO:0006306: DNA methylation2.95E-02
198GO:0051603: proteolysis involved in cellular protein catabolic process2.98E-02
199GO:0042254: ribosome biogenesis3.13E-02
200GO:0006730: one-carbon metabolic process3.15E-02
201GO:0009909: regulation of flower development3.19E-02
202GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.35E-02
203GO:0071215: cellular response to abscisic acid stimulus3.35E-02
204GO:0010227: floral organ abscission3.35E-02
205GO:0006096: glycolytic process3.41E-02
206GO:0006468: protein phosphorylation3.45E-02
207GO:0048316: seed development3.52E-02
208GO:0042127: regulation of cell proliferation3.56E-02
209GO:0010089: xylem development3.56E-02
210GO:0070417: cellular response to cold3.77E-02
211GO:0009553: embryo sac development3.97E-02
212GO:0008033: tRNA processing3.98E-02
213GO:0010087: phloem or xylem histogenesis3.98E-02
214GO:0048653: anther development3.98E-02
215GO:0042631: cellular response to water deprivation3.98E-02
216GO:0009958: positive gravitropism4.20E-02
217GO:0006662: glycerol ether metabolic process4.20E-02
218GO:0010305: leaf vascular tissue pattern formation4.20E-02
219GO:0048868: pollen tube development4.20E-02
220GO:0006342: chromatin silencing4.20E-02
221GO:0009741: response to brassinosteroid4.20E-02
222GO:0005975: carbohydrate metabolic process4.24E-02
223GO:0009742: brassinosteroid mediated signaling pathway4.34E-02
224GO:0048544: recognition of pollen4.42E-02
225GO:0006814: sodium ion transport4.42E-02
226GO:0007059: chromosome segregation4.42E-02
227GO:0008654: phospholipid biosynthetic process4.65E-02
228GO:0009851: auxin biosynthetic process4.65E-02
229GO:0080156: mitochondrial mRNA modification4.88E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0004519: endonuclease activity2.49E-10
5GO:0003723: RNA binding5.40E-06
6GO:0009672: auxin:proton symporter activity6.17E-05
7GO:0010329: auxin efflux transmembrane transporter activity1.49E-04
8GO:0042834: peptidoglycan binding4.73E-04
9GO:0016274: protein-arginine N-methyltransferase activity4.73E-04
10GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.73E-04
11GO:0004008: copper-exporting ATPase activity4.73E-04
12GO:0004071: aspartate-ammonia ligase activity4.73E-04
13GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.73E-04
14GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.73E-04
15GO:0052381: tRNA dimethylallyltransferase activity4.73E-04
16GO:0004160: dihydroxy-acid dehydratase activity4.73E-04
17GO:0004830: tryptophan-tRNA ligase activity4.73E-04
18GO:0008836: diaminopimelate decarboxylase activity4.73E-04
19GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.02E-03
20GO:0009884: cytokinin receptor activity1.02E-03
21GO:0035241: protein-arginine omega-N monomethyltransferase activity1.02E-03
22GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.02E-03
23GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.02E-03
24GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.02E-03
25GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.02E-03
26GO:0017150: tRNA dihydrouridine synthase activity1.66E-03
27GO:0042781: 3'-tRNA processing endoribonuclease activity1.66E-03
28GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.66E-03
29GO:0005034: osmosensor activity1.66E-03
30GO:0008469: histone-arginine N-methyltransferase activity1.66E-03
31GO:0008168: methyltransferase activity1.86E-03
32GO:0004222: metalloendopeptidase activity2.31E-03
33GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.41E-03
34GO:0035197: siRNA binding2.41E-03
35GO:0043023: ribosomal large subunit binding2.41E-03
36GO:0008508: bile acid:sodium symporter activity2.41E-03
37GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.41E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.41E-03
39GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.41E-03
40GO:0019843: rRNA binding2.51E-03
41GO:0019199: transmembrane receptor protein kinase activity3.24E-03
42GO:0005253: anion channel activity3.24E-03
43GO:0042277: peptide binding3.24E-03
44GO:0004930: G-protein coupled receptor activity3.24E-03
45GO:0008891: glycolate oxidase activity3.24E-03
46GO:0016279: protein-lysine N-methyltransferase activity3.24E-03
47GO:0004845: uracil phosphoribosyltransferase activity3.24E-03
48GO:0016836: hydro-lyase activity3.24E-03
49GO:0004888: transmembrane signaling receptor activity4.15E-03
50GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.15E-03
51GO:0004812: aminoacyl-tRNA ligase activity4.75E-03
52GO:0005247: voltage-gated chloride channel activity5.14E-03
53GO:0030983: mismatched DNA binding5.14E-03
54GO:0004605: phosphatidate cytidylyltransferase activity5.14E-03
55GO:1990714: hydroxyproline O-galactosyltransferase activity5.14E-03
56GO:0004332: fructose-bisphosphate aldolase activity5.14E-03
57GO:0005524: ATP binding6.20E-03
58GO:0004849: uridine kinase activity6.21E-03
59GO:0004656: procollagen-proline 4-dioxygenase activity6.21E-03
60GO:0019900: kinase binding6.21E-03
61GO:0004124: cysteine synthase activity6.21E-03
62GO:0008195: phosphatidate phosphatase activity6.21E-03
63GO:0019901: protein kinase binding6.40E-03
64GO:0016762: xyloglucan:xyloglucosyl transferase activity6.85E-03
65GO:0000150: recombinase activity7.34E-03
66GO:0004650: polygalacturonase activity7.83E-03
67GO:0000400: four-way junction DNA binding8.55E-03
68GO:0043022: ribosome binding8.55E-03
69GO:0004520: endodeoxyribonuclease activity8.55E-03
70GO:0005375: copper ion transmembrane transporter activity9.82E-03
71GO:0008173: RNA methyltransferase activity9.82E-03
72GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.82E-03
73GO:0016798: hydrolase activity, acting on glycosyl bonds1.17E-02
74GO:0004673: protein histidine kinase activity1.40E-02
75GO:0004805: trehalose-phosphatase activity1.40E-02
76GO:0008559: xenobiotic-transporting ATPase activity1.55E-02
77GO:0003697: single-stranded DNA binding1.65E-02
78GO:0004521: endoribonuclease activity1.71E-02
79GO:0004565: beta-galactosidase activity1.87E-02
80GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.87E-02
81GO:0031072: heat shock protein binding1.87E-02
82GO:0000155: phosphorelay sensor kinase activity1.87E-02
83GO:0005262: calcium channel activity1.87E-02
84GO:0009982: pseudouridine synthase activity1.87E-02
85GO:0051539: 4 iron, 4 sulfur cluster binding1.89E-02
86GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.04E-02
87GO:0004185: serine-type carboxypeptidase activity2.14E-02
88GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.51E-02
89GO:0031418: L-ascorbic acid binding2.57E-02
90GO:0043424: protein histidine kinase binding2.76E-02
91GO:0008094: DNA-dependent ATPase activity2.95E-02
92GO:0004176: ATP-dependent peptidase activity2.95E-02
93GO:0033612: receptor serine/threonine kinase binding2.95E-02
94GO:0008408: 3'-5' exonuclease activity2.95E-02
95GO:0004601: peroxidase activity3.06E-02
96GO:0016788: hydrolase activity, acting on ester bonds3.13E-02
97GO:0047134: protein-disulfide reductase activity3.77E-02
98GO:0004672: protein kinase activity3.99E-02
99GO:0004527: exonuclease activity4.20E-02
100GO:0003713: transcription coactivator activity4.20E-02
101GO:0001085: RNA polymerase II transcription factor binding4.20E-02
102GO:0008026: ATP-dependent helicase activity4.34E-02
103GO:0010181: FMN binding4.42E-02
104GO:0004791: thioredoxin-disulfide reductase activity4.42E-02
105GO:0052689: carboxylic ester hydrolase activity4.51E-02
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Gene type



Gene DE type