GO Enrichment Analysis of Co-expressed Genes with
AT3G48290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 2 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 3 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 4 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 5 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 6 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 7 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 8 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 9 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 10 | GO:0009606: tropism | 0.00E+00 |
| 11 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 12 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 13 | GO:0080127: fruit septum development | 0.00E+00 |
| 14 | GO:0042793: transcription from plastid promoter | 4.84E-08 |
| 15 | GO:0010569: regulation of double-strand break repair via homologous recombination | 9.64E-06 |
| 16 | GO:0046620: regulation of organ growth | 2.37E-05 |
| 17 | GO:0009733: response to auxin | 2.47E-05 |
| 18 | GO:0006518: peptide metabolic process | 3.30E-05 |
| 19 | GO:0006949: syncytium formation | 7.74E-05 |
| 20 | GO:0009828: plant-type cell wall loosening | 1.38E-04 |
| 21 | GO:0009734: auxin-activated signaling pathway | 2.38E-04 |
| 22 | GO:0009913: epidermal cell differentiation | 2.70E-04 |
| 23 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.56E-04 |
| 24 | GO:0009658: chloroplast organization | 4.61E-04 |
| 25 | GO:0035987: endodermal cell differentiation | 4.67E-04 |
| 26 | GO:0015904: tetracycline transport | 4.67E-04 |
| 27 | GO:0034757: negative regulation of iron ion transport | 4.67E-04 |
| 28 | GO:0042659: regulation of cell fate specification | 4.67E-04 |
| 29 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 4.67E-04 |
| 30 | GO:0080112: seed growth | 4.67E-04 |
| 31 | GO:0090558: plant epidermis development | 4.67E-04 |
| 32 | GO:1905039: carboxylic acid transmembrane transport | 4.67E-04 |
| 33 | GO:1905200: gibberellic acid transmembrane transport | 4.67E-04 |
| 34 | GO:1903866: palisade mesophyll development | 4.67E-04 |
| 35 | GO:0010063: positive regulation of trichoblast fate specification | 4.67E-04 |
| 36 | GO:0000105: histidine biosynthetic process | 5.81E-04 |
| 37 | GO:0042255: ribosome assembly | 5.81E-04 |
| 38 | GO:0006353: DNA-templated transcription, termination | 5.81E-04 |
| 39 | GO:0080156: mitochondrial mRNA modification | 8.95E-04 |
| 40 | GO:0009664: plant-type cell wall organization | 9.09E-04 |
| 41 | GO:0009662: etioplast organization | 1.01E-03 |
| 42 | GO:1900033: negative regulation of trichome patterning | 1.01E-03 |
| 43 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.01E-03 |
| 44 | GO:0080009: mRNA methylation | 1.01E-03 |
| 45 | GO:2000123: positive regulation of stomatal complex development | 1.01E-03 |
| 46 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.01E-03 |
| 47 | GO:0006650: glycerophospholipid metabolic process | 1.01E-03 |
| 48 | GO:2000071: regulation of defense response by callose deposition | 1.01E-03 |
| 49 | GO:0010271: regulation of chlorophyll catabolic process | 1.01E-03 |
| 50 | GO:0018026: peptidyl-lysine monomethylation | 1.01E-03 |
| 51 | GO:0048829: root cap development | 1.16E-03 |
| 52 | GO:0006535: cysteine biosynthetic process from serine | 1.16E-03 |
| 53 | GO:0001578: microtubule bundle formation | 1.64E-03 |
| 54 | GO:0090708: specification of plant organ axis polarity | 1.64E-03 |
| 55 | GO:0046168: glycerol-3-phosphate catabolic process | 1.64E-03 |
| 56 | GO:0080117: secondary growth | 1.64E-03 |
| 57 | GO:0090391: granum assembly | 1.64E-03 |
| 58 | GO:0010588: cotyledon vascular tissue pattern formation | 1.74E-03 |
| 59 | GO:0080188: RNA-directed DNA methylation | 2.21E-03 |
| 60 | GO:0045017: glycerolipid biosynthetic process | 2.38E-03 |
| 61 | GO:0010371: regulation of gibberellin biosynthetic process | 2.38E-03 |
| 62 | GO:0010071: root meristem specification | 2.38E-03 |
| 63 | GO:0010239: chloroplast mRNA processing | 2.38E-03 |
| 64 | GO:0006072: glycerol-3-phosphate metabolic process | 2.38E-03 |
| 65 | GO:0010306: rhamnogalacturonan II biosynthetic process | 2.38E-03 |
| 66 | GO:0016556: mRNA modification | 2.38E-03 |
| 67 | GO:0019344: cysteine biosynthetic process | 2.73E-03 |
| 68 | GO:0080147: root hair cell development | 2.73E-03 |
| 69 | GO:0006346: methylation-dependent chromatin silencing | 3.20E-03 |
| 70 | GO:0006479: protein methylation | 3.20E-03 |
| 71 | GO:0048629: trichome patterning | 3.20E-03 |
| 72 | GO:0051322: anaphase | 3.20E-03 |
| 73 | GO:0006221: pyrimidine nucleotide biosynthetic process | 3.20E-03 |
| 74 | GO:0030104: water homeostasis | 3.20E-03 |
| 75 | GO:2000038: regulation of stomatal complex development | 3.20E-03 |
| 76 | GO:0006021: inositol biosynthetic process | 3.20E-03 |
| 77 | GO:0003333: amino acid transmembrane transport | 3.31E-03 |
| 78 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 3.63E-03 |
| 79 | GO:0009926: auxin polar transport | 3.74E-03 |
| 80 | GO:0048497: maintenance of floral organ identity | 4.10E-03 |
| 81 | GO:0009107: lipoate biosynthetic process | 4.10E-03 |
| 82 | GO:0010375: stomatal complex patterning | 4.10E-03 |
| 83 | GO:0080110: sporopollenin biosynthetic process | 4.10E-03 |
| 84 | GO:0042127: regulation of cell proliferation | 4.31E-03 |
| 85 | GO:0009416: response to light stimulus | 4.81E-03 |
| 86 | GO:0008033: tRNA processing | 5.05E-03 |
| 87 | GO:0010087: phloem or xylem histogenesis | 5.05E-03 |
| 88 | GO:0010118: stomatal movement | 5.05E-03 |
| 89 | GO:0009643: photosynthetic acclimation | 5.08E-03 |
| 90 | GO:0006014: D-ribose metabolic process | 5.08E-03 |
| 91 | GO:0016554: cytidine to uridine editing | 5.08E-03 |
| 92 | GO:0010315: auxin efflux | 5.08E-03 |
| 93 | GO:1902456: regulation of stomatal opening | 5.08E-03 |
| 94 | GO:0048831: regulation of shoot system development | 5.08E-03 |
| 95 | GO:0003006: developmental process involved in reproduction | 5.08E-03 |
| 96 | GO:0010305: leaf vascular tissue pattern formation | 5.44E-03 |
| 97 | GO:0006364: rRNA processing | 5.47E-03 |
| 98 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 6.13E-03 |
| 99 | GO:0010310: regulation of hydrogen peroxide metabolic process | 6.13E-03 |
| 100 | GO:2000067: regulation of root morphogenesis | 6.13E-03 |
| 101 | GO:0009955: adaxial/abaxial pattern specification | 6.13E-03 |
| 102 | GO:1901259: chloroplast rRNA processing | 6.13E-03 |
| 103 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.13E-03 |
| 104 | GO:0048509: regulation of meristem development | 6.13E-03 |
| 105 | GO:0048825: cotyledon development | 6.28E-03 |
| 106 | GO:0048367: shoot system development | 7.07E-03 |
| 107 | GO:0032502: developmental process | 7.19E-03 |
| 108 | GO:0010103: stomatal complex morphogenesis | 7.25E-03 |
| 109 | GO:0007050: cell cycle arrest | 7.25E-03 |
| 110 | GO:0048437: floral organ development | 7.25E-03 |
| 111 | GO:0015937: coenzyme A biosynthetic process | 7.25E-03 |
| 112 | GO:0009826: unidimensional cell growth | 7.35E-03 |
| 113 | GO:0055075: potassium ion homeostasis | 8.44E-03 |
| 114 | GO:0052543: callose deposition in cell wall | 8.44E-03 |
| 115 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 8.44E-03 |
| 116 | GO:0009642: response to light intensity | 8.44E-03 |
| 117 | GO:0048766: root hair initiation | 8.44E-03 |
| 118 | GO:0032544: plastid translation | 9.69E-03 |
| 119 | GO:0007389: pattern specification process | 9.69E-03 |
| 120 | GO:0019430: removal of superoxide radicals | 9.69E-03 |
| 121 | GO:0010027: thylakoid membrane organization | 9.76E-03 |
| 122 | GO:0048589: developmental growth | 1.10E-02 |
| 123 | GO:0000902: cell morphogenesis | 1.10E-02 |
| 124 | GO:0048507: meristem development | 1.10E-02 |
| 125 | GO:0010411: xyloglucan metabolic process | 1.15E-02 |
| 126 | GO:1900865: chloroplast RNA modification | 1.24E-02 |
| 127 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.24E-02 |
| 128 | GO:2000280: regulation of root development | 1.24E-02 |
| 129 | GO:0048481: plant ovule development | 1.28E-02 |
| 130 | GO:0000160: phosphorelay signal transduction system | 1.34E-02 |
| 131 | GO:0045036: protein targeting to chloroplast | 1.38E-02 |
| 132 | GO:0031627: telomeric loop formation | 1.38E-02 |
| 133 | GO:0009750: response to fructose | 1.53E-02 |
| 134 | GO:0009682: induced systemic resistance | 1.53E-02 |
| 135 | GO:0015770: sucrose transport | 1.53E-02 |
| 136 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.53E-02 |
| 137 | GO:0006865: amino acid transport | 1.55E-02 |
| 138 | GO:0040008: regulation of growth | 1.63E-02 |
| 139 | GO:0006790: sulfur compound metabolic process | 1.69E-02 |
| 140 | GO:0012501: programmed cell death | 1.69E-02 |
| 141 | GO:0010152: pollen maturation | 1.69E-02 |
| 142 | GO:0045037: protein import into chloroplast stroma | 1.69E-02 |
| 143 | GO:0010582: floral meristem determinacy | 1.69E-02 |
| 144 | GO:0030001: metal ion transport | 1.85E-02 |
| 145 | GO:0030048: actin filament-based movement | 1.85E-02 |
| 146 | GO:0010102: lateral root morphogenesis | 1.85E-02 |
| 147 | GO:0009691: cytokinin biosynthetic process | 1.85E-02 |
| 148 | GO:0071555: cell wall organization | 1.89E-02 |
| 149 | GO:0009739: response to gibberellin | 1.99E-02 |
| 150 | GO:0048467: gynoecium development | 2.01E-02 |
| 151 | GO:0008380: RNA splicing | 2.16E-02 |
| 152 | GO:0042546: cell wall biogenesis | 2.18E-02 |
| 153 | GO:0046854: phosphatidylinositol phosphorylation | 2.19E-02 |
| 154 | GO:0009901: anther dehiscence | 2.19E-02 |
| 155 | GO:0006833: water transport | 2.36E-02 |
| 156 | GO:0006636: unsaturated fatty acid biosynthetic process | 2.36E-02 |
| 157 | GO:0031347: regulation of defense response | 2.54E-02 |
| 158 | GO:0010073: meristem maintenance | 2.73E-02 |
| 159 | GO:0006825: copper ion transport | 2.73E-02 |
| 160 | GO:0051302: regulation of cell division | 2.73E-02 |
| 161 | GO:0019953: sexual reproduction | 2.73E-02 |
| 162 | GO:0009736: cytokinin-activated signaling pathway | 2.83E-02 |
| 163 | GO:0016998: cell wall macromolecule catabolic process | 2.92E-02 |
| 164 | GO:0010431: seed maturation | 2.92E-02 |
| 165 | GO:0006306: DNA methylation | 2.92E-02 |
| 166 | GO:0071215: cellular response to abscisic acid stimulus | 3.31E-02 |
| 167 | GO:0010082: regulation of root meristem growth | 3.31E-02 |
| 168 | GO:0010584: pollen exine formation | 3.51E-02 |
| 169 | GO:0048443: stamen development | 3.51E-02 |
| 170 | GO:0048366: leaf development | 3.66E-02 |
| 171 | GO:0070417: cellular response to cold | 3.72E-02 |
| 172 | GO:0080167: response to karrikin | 3.90E-02 |
| 173 | GO:0009793: embryo development ending in seed dormancy | 3.93E-02 |
| 174 | GO:0000226: microtubule cytoskeleton organization | 3.93E-02 |
| 175 | GO:0080022: primary root development | 3.93E-02 |
| 176 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.07E-02 |
| 177 | GO:0048868: pollen tube development | 4.15E-02 |
| 178 | GO:0009741: response to brassinosteroid | 4.15E-02 |
| 179 | GO:0009958: positive gravitropism | 4.15E-02 |
| 180 | GO:0051726: regulation of cell cycle | 4.26E-02 |
| 181 | GO:0007018: microtubule-based movement | 4.37E-02 |
| 182 | GO:0009646: response to absence of light | 4.37E-02 |
| 183 | GO:0048544: recognition of pollen | 4.37E-02 |
| 184 | GO:0019252: starch biosynthetic process | 4.59E-02 |
| 185 | GO:0008654: phospholipid biosynthetic process | 4.59E-02 |
| 186 | GO:0009851: auxin biosynthetic process | 4.59E-02 |
| 187 | GO:0009749: response to glucose | 4.59E-02 |
| 188 | GO:0071554: cell wall organization or biogenesis | 4.81E-02 |
| 189 | GO:0002229: defense response to oomycetes | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 2 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 3 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 4 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
| 5 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 6 | GO:0004124: cysteine synthase activity | 3.62E-04 |
| 7 | GO:0003723: RNA binding | 3.67E-04 |
| 8 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 4.67E-04 |
| 9 | GO:0004016: adenylate cyclase activity | 4.67E-04 |
| 10 | GO:0004400: histidinol-phosphate transaminase activity | 4.67E-04 |
| 11 | GO:1905201: gibberellin transmembrane transporter activity | 4.67E-04 |
| 12 | GO:0004632: phosphopantothenate--cysteine ligase activity | 4.67E-04 |
| 13 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 4.67E-04 |
| 14 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 4.67E-04 |
| 15 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 4.67E-04 |
| 16 | GO:0016274: protein-arginine N-methyltransferase activity | 4.67E-04 |
| 17 | GO:0052381: tRNA dimethylallyltransferase activity | 4.67E-04 |
| 18 | GO:0004519: endonuclease activity | 4.98E-04 |
| 19 | GO:0019843: rRNA binding | 5.04E-04 |
| 20 | GO:0017118: lipoyltransferase activity | 1.01E-03 |
| 21 | GO:0042389: omega-3 fatty acid desaturase activity | 1.01E-03 |
| 22 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 1.01E-03 |
| 23 | GO:0016415: octanoyltransferase activity | 1.01E-03 |
| 24 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.01E-03 |
| 25 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 1.01E-03 |
| 26 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.01E-03 |
| 27 | GO:0008805: carbon-monoxide oxygenase activity | 1.01E-03 |
| 28 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.01E-03 |
| 29 | GO:0008493: tetracycline transporter activity | 1.01E-03 |
| 30 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.01E-03 |
| 31 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 1.01E-03 |
| 32 | GO:0009884: cytokinin receptor activity | 1.01E-03 |
| 33 | GO:0016805: dipeptidase activity | 1.64E-03 |
| 34 | GO:0005034: osmosensor activity | 1.64E-03 |
| 35 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 1.64E-03 |
| 36 | GO:0017150: tRNA dihydrouridine synthase activity | 1.64E-03 |
| 37 | GO:0003725: double-stranded RNA binding | 1.74E-03 |
| 38 | GO:0001872: (1->3)-beta-D-glucan binding | 2.38E-03 |
| 39 | GO:0009041: uridylate kinase activity | 2.38E-03 |
| 40 | GO:0016279: protein-lysine N-methyltransferase activity | 3.20E-03 |
| 41 | GO:0010011: auxin binding | 3.20E-03 |
| 42 | GO:0010328: auxin influx transmembrane transporter activity | 3.20E-03 |
| 43 | GO:0004930: G-protein coupled receptor activity | 3.20E-03 |
| 44 | GO:0030570: pectate lyase activity | 3.96E-03 |
| 45 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 4.10E-03 |
| 46 | GO:0004888: transmembrane signaling receptor activity | 4.10E-03 |
| 47 | GO:0003727: single-stranded RNA binding | 4.31E-03 |
| 48 | GO:0004784: superoxide dismutase activity | 5.08E-03 |
| 49 | GO:0019900: kinase binding | 6.13E-03 |
| 50 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 6.13E-03 |
| 51 | GO:0004747: ribokinase activity | 6.13E-03 |
| 52 | GO:0019901: protein kinase binding | 6.28E-03 |
| 53 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 6.73E-03 |
| 54 | GO:0008865: fructokinase activity | 8.44E-03 |
| 55 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 9.69E-03 |
| 56 | GO:0008173: RNA methyltransferase activity | 9.69E-03 |
| 57 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.15E-02 |
| 58 | GO:0009672: auxin:proton symporter activity | 1.24E-02 |
| 59 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.35E-02 |
| 60 | GO:0004673: protein histidine kinase activity | 1.38E-02 |
| 61 | GO:0004222: metalloendopeptidase activity | 1.41E-02 |
| 62 | GO:0003691: double-stranded telomeric DNA binding | 1.53E-02 |
| 63 | GO:0008515: sucrose transmembrane transporter activity | 1.53E-02 |
| 64 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.62E-02 |
| 65 | GO:0003677: DNA binding | 1.81E-02 |
| 66 | GO:0000155: phosphorelay sensor kinase activity | 1.85E-02 |
| 67 | GO:0010329: auxin efflux transmembrane transporter activity | 1.85E-02 |
| 68 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.85E-02 |
| 69 | GO:0003774: motor activity | 2.01E-02 |
| 70 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.01E-02 |
| 71 | GO:0004190: aspartic-type endopeptidase activity | 2.19E-02 |
| 72 | GO:0051119: sugar transmembrane transporter activity | 2.19E-02 |
| 73 | GO:0043621: protein self-association | 2.27E-02 |
| 74 | GO:0015293: symporter activity | 2.36E-02 |
| 75 | GO:0003714: transcription corepressor activity | 2.54E-02 |
| 76 | GO:0051087: chaperone binding | 2.73E-02 |
| 77 | GO:0043424: protein histidine kinase binding | 2.73E-02 |
| 78 | GO:0008168: methyltransferase activity | 2.85E-02 |
| 79 | GO:0008408: 3'-5' exonuclease activity | 2.92E-02 |
| 80 | GO:0004707: MAP kinase activity | 2.92E-02 |
| 81 | GO:0003690: double-stranded DNA binding | 2.93E-02 |
| 82 | GO:0003777: microtubule motor activity | 3.13E-02 |
| 83 | GO:0015171: amino acid transmembrane transporter activity | 3.13E-02 |
| 84 | GO:0005515: protein binding | 3.65E-02 |
| 85 | GO:0046872: metal ion binding | 3.83E-02 |
| 86 | GO:0004527: exonuclease activity | 4.15E-02 |
| 87 | GO:0003713: transcription coactivator activity | 4.15E-02 |
| 88 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 4.15E-02 |
| 89 | GO:0001085: RNA polymerase II transcription factor binding | 4.15E-02 |
| 90 | GO:0050662: coenzyme binding | 4.37E-02 |
| 91 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 4.86E-02 |