GO Enrichment Analysis of Co-expressed Genes with
AT3G44160
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0006167: AMP biosynthetic process | 0.00E+00 |
| 5 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 6 | GO:0044249: cellular biosynthetic process | 0.00E+00 |
| 7 | GO:0046396: D-galacturonate metabolic process | 0.00E+00 |
| 8 | GO:1905177: tracheary element differentiation | 0.00E+00 |
| 9 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 10 | GO:0046040: IMP metabolic process | 0.00E+00 |
| 11 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 12 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 13 | GO:0009658: chloroplast organization | 5.22E-07 |
| 14 | GO:0042026: protein refolding | 2.31E-06 |
| 15 | GO:1900871: chloroplast mRNA modification | 3.18E-06 |
| 16 | GO:0009657: plastid organization | 8.20E-06 |
| 17 | GO:0009793: embryo development ending in seed dormancy | 6.04E-05 |
| 18 | GO:0042793: transcription from plastid promoter | 1.09E-04 |
| 19 | GO:0009790: embryo development | 1.31E-04 |
| 20 | GO:0006458: 'de novo' protein folding | 1.49E-04 |
| 21 | GO:0006353: DNA-templated transcription, termination | 2.48E-04 |
| 22 | GO:2000025: regulation of leaf formation | 2.63E-04 |
| 23 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 2.63E-04 |
| 24 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 2.63E-04 |
| 25 | GO:0000476: maturation of 4.5S rRNA | 2.63E-04 |
| 26 | GO:0000967: rRNA 5'-end processing | 2.63E-04 |
| 27 | GO:0070509: calcium ion import | 2.63E-04 |
| 28 | GO:0019478: D-amino acid catabolic process | 2.63E-04 |
| 29 | GO:0042547: cell wall modification involved in multidimensional cell growth | 2.63E-04 |
| 30 | GO:0042371: vitamin K biosynthetic process | 2.63E-04 |
| 31 | GO:0006747: FAD biosynthetic process | 2.63E-04 |
| 32 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 2.63E-04 |
| 33 | GO:0006419: alanyl-tRNA aminoacylation | 2.63E-04 |
| 34 | GO:0019252: starch biosynthetic process | 2.75E-04 |
| 35 | GO:0010027: thylakoid membrane organization | 4.90E-04 |
| 36 | GO:0010198: synergid death | 5.78E-04 |
| 37 | GO:0060359: response to ammonium ion | 5.78E-04 |
| 38 | GO:0019388: galactose catabolic process | 5.78E-04 |
| 39 | GO:0044208: 'de novo' AMP biosynthetic process | 5.78E-04 |
| 40 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 5.78E-04 |
| 41 | GO:0001682: tRNA 5'-leader removal | 5.78E-04 |
| 42 | GO:0034470: ncRNA processing | 5.78E-04 |
| 43 | GO:0006415: translational termination | 5.92E-04 |
| 44 | GO:2000012: regulation of auxin polar transport | 7.67E-04 |
| 45 | GO:0010020: chloroplast fission | 8.62E-04 |
| 46 | GO:0048281: inflorescence morphogenesis | 9.39E-04 |
| 47 | GO:0006954: inflammatory response | 9.39E-04 |
| 48 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 9.39E-04 |
| 49 | GO:0010623: programmed cell death involved in cell development | 9.39E-04 |
| 50 | GO:0015940: pantothenate biosynthetic process | 9.39E-04 |
| 51 | GO:0043157: response to cation stress | 9.39E-04 |
| 52 | GO:0005977: glycogen metabolic process | 9.39E-04 |
| 53 | GO:0045910: negative regulation of DNA recombination | 9.39E-04 |
| 54 | GO:0071732: cellular response to nitric oxide | 9.62E-04 |
| 55 | GO:0010239: chloroplast mRNA processing | 1.34E-03 |
| 56 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.34E-03 |
| 57 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.34E-03 |
| 58 | GO:0010148: transpiration | 1.34E-03 |
| 59 | GO:0016556: mRNA modification | 1.34E-03 |
| 60 | GO:0009590: detection of gravity | 1.34E-03 |
| 61 | GO:0043572: plastid fission | 1.34E-03 |
| 62 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.34E-03 |
| 63 | GO:0009152: purine ribonucleotide biosynthetic process | 1.34E-03 |
| 64 | GO:0061077: chaperone-mediated protein folding | 1.43E-03 |
| 65 | GO:0006730: one-carbon metabolic process | 1.56E-03 |
| 66 | GO:0007005: mitochondrion organization | 1.56E-03 |
| 67 | GO:0071369: cellular response to ethylene stimulus | 1.70E-03 |
| 68 | GO:0022622: root system development | 1.79E-03 |
| 69 | GO:0010508: positive regulation of autophagy | 1.79E-03 |
| 70 | GO:0044205: 'de novo' UMP biosynthetic process | 1.79E-03 |
| 71 | GO:0010021: amylopectin biosynthetic process | 1.79E-03 |
| 72 | GO:0051781: positive regulation of cell division | 1.79E-03 |
| 73 | GO:0042274: ribosomal small subunit biogenesis | 1.79E-03 |
| 74 | GO:0032543: mitochondrial translation | 2.29E-03 |
| 75 | GO:0010236: plastoquinone biosynthetic process | 2.29E-03 |
| 76 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.29E-03 |
| 77 | GO:0048868: pollen tube development | 2.32E-03 |
| 78 | GO:0032973: amino acid export | 2.82E-03 |
| 79 | GO:0050665: hydrogen peroxide biosynthetic process | 2.82E-03 |
| 80 | GO:0009959: negative gravitropism | 2.82E-03 |
| 81 | GO:0071281: cellular response to iron ion | 3.26E-03 |
| 82 | GO:0019509: L-methionine salvage from methylthioadenosine | 3.40E-03 |
| 83 | GO:0046835: carbohydrate phosphorylation | 3.40E-03 |
| 84 | GO:0042372: phylloquinone biosynthetic process | 3.40E-03 |
| 85 | GO:1901259: chloroplast rRNA processing | 3.40E-03 |
| 86 | GO:0017148: negative regulation of translation | 3.40E-03 |
| 87 | GO:0009942: longitudinal axis specification | 3.40E-03 |
| 88 | GO:0009854: oxidative photosynthetic carbon pathway | 3.40E-03 |
| 89 | GO:0009648: photoperiodism | 3.40E-03 |
| 90 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 4.00E-03 |
| 91 | GO:0070370: cellular heat acclimation | 4.00E-03 |
| 92 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 4.00E-03 |
| 93 | GO:0010444: guard mother cell differentiation | 4.00E-03 |
| 94 | GO:0006400: tRNA modification | 4.00E-03 |
| 95 | GO:0010103: stomatal complex morphogenesis | 4.00E-03 |
| 96 | GO:0032880: regulation of protein localization | 4.00E-03 |
| 97 | GO:0048528: post-embryonic root development | 4.00E-03 |
| 98 | GO:0009772: photosynthetic electron transport in photosystem II | 4.00E-03 |
| 99 | GO:0043090: amino acid import | 4.00E-03 |
| 100 | GO:0009627: systemic acquired resistance | 4.61E-03 |
| 101 | GO:0005978: glycogen biosynthetic process | 4.65E-03 |
| 102 | GO:0070413: trehalose metabolism in response to stress | 4.65E-03 |
| 103 | GO:0000105: histidine biosynthetic process | 4.65E-03 |
| 104 | GO:0009231: riboflavin biosynthetic process | 4.65E-03 |
| 105 | GO:0052543: callose deposition in cell wall | 4.65E-03 |
| 106 | GO:0048564: photosystem I assembly | 4.65E-03 |
| 107 | GO:0001558: regulation of cell growth | 5.32E-03 |
| 108 | GO:0010204: defense response signaling pathway, resistance gene-independent | 5.32E-03 |
| 109 | GO:0032544: plastid translation | 5.32E-03 |
| 110 | GO:0007389: pattern specification process | 5.32E-03 |
| 111 | GO:0006098: pentose-phosphate shunt | 6.03E-03 |
| 112 | GO:0080144: amino acid homeostasis | 6.03E-03 |
| 113 | GO:0006783: heme biosynthetic process | 6.03E-03 |
| 114 | GO:0006779: porphyrin-containing compound biosynthetic process | 6.77E-03 |
| 115 | GO:1900865: chloroplast RNA modification | 6.77E-03 |
| 116 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.54E-03 |
| 117 | GO:0006298: mismatch repair | 7.54E-03 |
| 118 | GO:0006949: syncytium formation | 7.54E-03 |
| 119 | GO:0006259: DNA metabolic process | 7.54E-03 |
| 120 | GO:0005975: carbohydrate metabolic process | 7.99E-03 |
| 121 | GO:0006265: DNA topological change | 8.35E-03 |
| 122 | GO:0009073: aromatic amino acid family biosynthetic process | 8.35E-03 |
| 123 | GO:0005983: starch catabolic process | 9.17E-03 |
| 124 | GO:0045037: protein import into chloroplast stroma | 9.17E-03 |
| 125 | GO:0006006: glucose metabolic process | 1.00E-02 |
| 126 | GO:0050826: response to freezing | 1.00E-02 |
| 127 | GO:0006094: gluconeogenesis | 1.00E-02 |
| 128 | GO:0010207: photosystem II assembly | 1.09E-02 |
| 129 | GO:0009664: plant-type cell wall organization | 1.11E-02 |
| 130 | GO:0006508: proteolysis | 1.18E-02 |
| 131 | GO:0090351: seedling development | 1.18E-02 |
| 132 | GO:0070588: calcium ion transmembrane transport | 1.18E-02 |
| 133 | GO:0006364: rRNA processing | 1.19E-02 |
| 134 | GO:0048366: leaf development | 1.24E-02 |
| 135 | GO:0000162: tryptophan biosynthetic process | 1.28E-02 |
| 136 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.38E-02 |
| 137 | GO:0007010: cytoskeleton organization | 1.38E-02 |
| 138 | GO:0005992: trehalose biosynthetic process | 1.38E-02 |
| 139 | GO:0009116: nucleoside metabolic process | 1.38E-02 |
| 140 | GO:0006418: tRNA aminoacylation for protein translation | 1.48E-02 |
| 141 | GO:0051302: regulation of cell division | 1.48E-02 |
| 142 | GO:0015992: proton transport | 1.58E-02 |
| 143 | GO:0048511: rhythmic process | 1.58E-02 |
| 144 | GO:0009814: defense response, incompatible interaction | 1.68E-02 |
| 145 | GO:0016226: iron-sulfur cluster assembly | 1.68E-02 |
| 146 | GO:0031348: negative regulation of defense response | 1.68E-02 |
| 147 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.79E-02 |
| 148 | GO:0001944: vasculature development | 1.79E-02 |
| 149 | GO:0006012: galactose metabolic process | 1.79E-02 |
| 150 | GO:0010089: xylem development | 1.90E-02 |
| 151 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.01E-02 |
| 152 | GO:0008284: positive regulation of cell proliferation | 2.01E-02 |
| 153 | GO:0008033: tRNA processing | 2.13E-02 |
| 154 | GO:0048653: anther development | 2.13E-02 |
| 155 | GO:0009958: positive gravitropism | 2.24E-02 |
| 156 | GO:0006662: glycerol ether metabolic process | 2.24E-02 |
| 157 | GO:0042752: regulation of circadian rhythm | 2.36E-02 |
| 158 | GO:0007059: chromosome segregation | 2.36E-02 |
| 159 | GO:0002229: defense response to oomycetes | 2.61E-02 |
| 160 | GO:0000302: response to reactive oxygen species | 2.61E-02 |
| 161 | GO:0010583: response to cyclopentenone | 2.73E-02 |
| 162 | GO:0009630: gravitropism | 2.73E-02 |
| 163 | GO:0006413: translational initiation | 2.74E-02 |
| 164 | GO:0045490: pectin catabolic process | 2.94E-02 |
| 165 | GO:0010252: auxin homeostasis | 2.99E-02 |
| 166 | GO:0009828: plant-type cell wall loosening | 2.99E-02 |
| 167 | GO:0009451: RNA modification | 3.01E-02 |
| 168 | GO:0001666: response to hypoxia | 3.39E-02 |
| 169 | GO:0015995: chlorophyll biosynthetic process | 3.80E-02 |
| 170 | GO:0008219: cell death | 4.09E-02 |
| 171 | GO:0006811: ion transport | 4.38E-02 |
| 172 | GO:0048527: lateral root development | 4.53E-02 |
| 173 | GO:0042254: ribosome biogenesis | 4.62E-02 |
| 174 | GO:0045087: innate immune response | 4.84E-02 |
| 175 | GO:0009853: photorespiration | 4.84E-02 |
| 176 | GO:0034599: cellular response to oxidative stress | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 2 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0047912: galacturonokinase activity | 0.00E+00 |
| 5 | GO:0051060: pullulanase activity | 0.00E+00 |
| 6 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 7 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 8 | GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity | 0.00E+00 |
| 9 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 10 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 12 | GO:0005048: signal sequence binding | 0.00E+00 |
| 13 | GO:0004019: adenylosuccinate synthase activity | 0.00E+00 |
| 14 | GO:0008237: metallopeptidase activity | 1.26E-06 |
| 15 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.18E-06 |
| 16 | GO:0004176: ATP-dependent peptidase activity | 4.05E-06 |
| 17 | GO:0016149: translation release factor activity, codon specific | 2.59E-05 |
| 18 | GO:0044183: protein binding involved in protein folding | 2.60E-05 |
| 19 | GO:0004222: metalloendopeptidase activity | 7.99E-05 |
| 20 | GO:0004556: alpha-amylase activity | 1.09E-04 |
| 21 | GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | 2.63E-04 |
| 22 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 2.63E-04 |
| 23 | GO:0004813: alanine-tRNA ligase activity | 2.63E-04 |
| 24 | GO:0005227: calcium activated cation channel activity | 2.63E-04 |
| 25 | GO:0003747: translation release factor activity | 3.70E-04 |
| 26 | GO:0003919: FMN adenylyltransferase activity | 5.78E-04 |
| 27 | GO:0004614: phosphoglucomutase activity | 5.78E-04 |
| 28 | GO:0019156: isoamylase activity | 5.78E-04 |
| 29 | GO:0004047: aminomethyltransferase activity | 5.78E-04 |
| 30 | GO:0005525: GTP binding | 6.60E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 9.39E-04 |
| 32 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 1.34E-03 |
| 33 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 1.34E-03 |
| 34 | GO:0043023: ribosomal large subunit binding | 1.34E-03 |
| 35 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 1.34E-03 |
| 36 | GO:0001872: (1->3)-beta-D-glucan binding | 1.34E-03 |
| 37 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 1.34E-03 |
| 38 | GO:0030570: pectate lyase activity | 1.70E-03 |
| 39 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.79E-03 |
| 40 | GO:0019199: transmembrane receptor protein kinase activity | 1.79E-03 |
| 41 | GO:0042277: peptide binding | 1.79E-03 |
| 42 | GO:0008891: glycolate oxidase activity | 1.79E-03 |
| 43 | GO:0004335: galactokinase activity | 1.79E-03 |
| 44 | GO:0004659: prenyltransferase activity | 1.79E-03 |
| 45 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.29E-03 |
| 46 | GO:0045300: acyl-[acyl-carrier-protein] desaturase activity | 2.29E-03 |
| 47 | GO:0016887: ATPase activity | 2.66E-03 |
| 48 | GO:0030983: mismatched DNA binding | 2.82E-03 |
| 49 | GO:0080030: methyl indole-3-acetate esterase activity | 2.82E-03 |
| 50 | GO:0004332: fructose-bisphosphate aldolase activity | 2.82E-03 |
| 51 | GO:0004526: ribonuclease P activity | 2.82E-03 |
| 52 | GO:0051082: unfolded protein binding | 2.88E-03 |
| 53 | GO:0003684: damaged DNA binding | 3.47E-03 |
| 54 | GO:0019843: rRNA binding | 3.84E-03 |
| 55 | GO:0016597: amino acid binding | 3.90E-03 |
| 56 | GO:0004427: inorganic diphosphatase activity | 4.00E-03 |
| 57 | GO:0008312: 7S RNA binding | 4.65E-03 |
| 58 | GO:0043022: ribosome binding | 4.65E-03 |
| 59 | GO:0003924: GTPase activity | 5.28E-03 |
| 60 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 5.32E-03 |
| 61 | GO:0004519: endonuclease activity | 6.00E-03 |
| 62 | GO:0009672: auxin:proton symporter activity | 6.77E-03 |
| 63 | GO:0003723: RNA binding | 7.09E-03 |
| 64 | GO:0004805: trehalose-phosphatase activity | 7.54E-03 |
| 65 | GO:0000049: tRNA binding | 9.17E-03 |
| 66 | GO:0043621: protein self-association | 9.55E-03 |
| 67 | GO:0000287: magnesium ion binding | 9.84E-03 |
| 68 | GO:0004565: beta-galactosidase activity | 1.00E-02 |
| 69 | GO:0010329: auxin efflux transmembrane transporter activity | 1.00E-02 |
| 70 | GO:0005262: calcium channel activity | 1.00E-02 |
| 71 | GO:0016788: hydrolase activity, acting on ester bonds | 1.03E-02 |
| 72 | GO:0008083: growth factor activity | 1.09E-02 |
| 73 | GO:0004535: poly(A)-specific ribonuclease activity | 1.09E-02 |
| 74 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.09E-02 |
| 75 | GO:0003887: DNA-directed DNA polymerase activity | 1.28E-02 |
| 76 | GO:0046872: metal ion binding | 1.78E-02 |
| 77 | GO:0047134: protein-disulfide reductase activity | 2.01E-02 |
| 78 | GO:0004812: aminoacyl-tRNA ligase activity | 2.01E-02 |
| 79 | GO:0016829: lyase activity | 2.31E-02 |
| 80 | GO:0010181: FMN binding | 2.36E-02 |
| 81 | GO:0004791: thioredoxin-disulfide reductase activity | 2.36E-02 |
| 82 | GO:0016853: isomerase activity | 2.36E-02 |
| 83 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.86E-02 |
| 84 | GO:0016791: phosphatase activity | 2.99E-02 |
| 85 | GO:0003743: translation initiation factor activity | 3.44E-02 |
| 86 | GO:0030247: polysaccharide binding | 3.80E-02 |
| 87 | GO:0008168: methyltransferase activity | 4.37E-02 |
| 88 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.53E-02 |
| 89 | GO:0030145: manganese ion binding | 4.53E-02 |
| 90 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 4.84E-02 |
| 91 | GO:0003746: translation elongation factor activity | 4.84E-02 |