Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G43340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
9GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0010157: response to chlorate0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0009658: chloroplast organization8.52E-11
15GO:0042793: transcription from plastid promoter8.68E-11
16GO:0009451: RNA modification5.13E-08
17GO:0045037: protein import into chloroplast stroma2.08E-06
18GO:0009793: embryo development ending in seed dormancy6.70E-06
19GO:0000373: Group II intron splicing2.67E-05
20GO:0048437: floral organ development3.33E-04
21GO:0006400: tRNA modification3.33E-04
22GO:0009790: embryo development3.61E-04
23GO:0006419: alanyl-tRNA aminoacylation3.73E-04
24GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.73E-04
25GO:0010063: positive regulation of trichoblast fate specification3.73E-04
26GO:0010480: microsporocyte differentiation3.73E-04
27GO:0042371: vitamin K biosynthetic process3.73E-04
28GO:0043609: regulation of carbon utilization3.73E-04
29GO:0006436: tryptophanyl-tRNA aminoacylation3.73E-04
30GO:0009704: de-etiolation4.18E-04
31GO:0006353: DNA-templated transcription, termination4.18E-04
32GO:0006002: fructose 6-phosphate metabolic process5.11E-04
33GO:0009657: plastid organization5.11E-04
34GO:0009416: response to light stimulus6.97E-04
35GO:0006096: glycolytic process7.86E-04
36GO:0006420: arginyl-tRNA aminoacylation8.10E-04
37GO:0080005: photosystem stoichiometry adjustment8.10E-04
38GO:0060359: response to ammonium ion8.10E-04
39GO:0048255: mRNA stabilization8.10E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process8.10E-04
41GO:0018026: peptidyl-lysine monomethylation8.10E-04
42GO:0009662: etioplast organization8.10E-04
43GO:0042325: regulation of phosphorylation8.10E-04
44GO:0009220: pyrimidine ribonucleotide biosynthetic process8.10E-04
45GO:1904143: positive regulation of carotenoid biosynthetic process8.10E-04
46GO:0042550: photosystem I stabilization8.10E-04
47GO:0010027: thylakoid membrane organization9.34E-04
48GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.31E-03
49GO:0006000: fructose metabolic process1.31E-03
50GO:0042780: tRNA 3'-end processing1.31E-03
51GO:0001578: microtubule bundle formation1.31E-03
52GO:0043157: response to cation stress1.31E-03
53GO:0010020: chloroplast fission1.41E-03
54GO:1902476: chloride transmembrane transport1.89E-03
55GO:0010071: root meristem specification1.89E-03
56GO:0010239: chloroplast mRNA processing1.89E-03
57GO:0044211: CTP salvage1.89E-03
58GO:0019048: modulation by virus of host morphology or physiology1.89E-03
59GO:0015696: ammonium transport1.89E-03
60GO:0046739: transport of virus in multicellular host1.89E-03
61GO:2000904: regulation of starch metabolic process1.89E-03
62GO:0006164: purine nucleotide biosynthetic process1.89E-03
63GO:0031048: chromatin silencing by small RNA1.89E-03
64GO:0051289: protein homotetramerization1.89E-03
65GO:0016556: mRNA modification1.89E-03
66GO:0043572: plastid fission1.89E-03
67GO:2001141: regulation of RNA biosynthetic process1.89E-03
68GO:0006306: DNA methylation2.37E-03
69GO:0006508: proteolysis2.37E-03
70GO:0016998: cell wall macromolecule catabolic process2.37E-03
71GO:0051322: anaphase2.54E-03
72GO:0015846: polyamine transport2.54E-03
73GO:0072488: ammonium transmembrane transport2.54E-03
74GO:0006021: inositol biosynthetic process2.54E-03
75GO:0051567: histone H3-K9 methylation2.54E-03
76GO:0044205: 'de novo' UMP biosynthetic process2.54E-03
77GO:0044206: UMP salvage2.54E-03
78GO:0006346: methylation-dependent chromatin silencing2.54E-03
79GO:0016123: xanthophyll biosynthetic process3.25E-03
80GO:0016131: brassinosteroid metabolic process3.25E-03
81GO:0010236: plastoquinone biosynthetic process3.25E-03
82GO:0009959: negative gravitropism4.02E-03
83GO:0006655: phosphatidylglycerol biosynthetic process4.02E-03
84GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.02E-03
85GO:0006206: pyrimidine nucleobase metabolic process4.02E-03
86GO:0009228: thiamine biosynthetic process4.02E-03
87GO:0016458: gene silencing4.02E-03
88GO:0009646: response to absence of light4.18E-03
89GO:0009955: adaxial/abaxial pattern specification4.85E-03
90GO:0042372: phylloquinone biosynthetic process4.85E-03
91GO:0006458: 'de novo' protein folding4.85E-03
92GO:0042026: protein refolding4.85E-03
93GO:0017148: negative regulation of translation4.85E-03
94GO:0009942: longitudinal axis specification4.85E-03
95GO:1901259: chloroplast rRNA processing4.85E-03
96GO:0030488: tRNA methylation4.85E-03
97GO:0032502: developmental process5.12E-03
98GO:0010583: response to cyclopentenone5.12E-03
99GO:0006955: immune response5.73E-03
100GO:0009772: photosynthetic electron transport in photosystem II5.73E-03
101GO:0006821: chloride transport5.73E-03
102GO:0010444: guard mother cell differentiation5.73E-03
103GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.73E-03
104GO:0015693: magnesium ion transport5.73E-03
105GO:0009828: plant-type cell wall loosening5.81E-03
106GO:0000105: histidine biosynthetic process6.65E-03
107GO:0009231: riboflavin biosynthetic process6.65E-03
108GO:0048564: photosystem I assembly6.65E-03
109GO:0006402: mRNA catabolic process6.65E-03
110GO:0009787: regulation of abscisic acid-activated signaling pathway6.65E-03
111GO:0019375: galactolipid biosynthetic process6.65E-03
112GO:0042255: ribosome assembly6.65E-03
113GO:0070413: trehalose metabolism in response to stress6.65E-03
114GO:0006810: transport7.51E-03
115GO:0071482: cellular response to light stimulus7.64E-03
116GO:0009827: plant-type cell wall modification7.64E-03
117GO:0010052: guard cell differentiation7.64E-03
118GO:0010497: plasmodesmata-mediated intercellular transport7.64E-03
119GO:0006526: arginine biosynthetic process7.64E-03
120GO:0032544: plastid translation7.64E-03
121GO:0007389: pattern specification process7.64E-03
122GO:0010411: xyloglucan metabolic process8.18E-03
123GO:0000902: cell morphogenesis8.66E-03
124GO:0006098: pentose-phosphate shunt8.66E-03
125GO:0048481: plant ovule development9.07E-03
126GO:0009638: phototropism9.74E-03
127GO:0009098: leucine biosynthetic process9.74E-03
128GO:0031425: chloroplast RNA processing9.74E-03
129GO:0006949: syncytium formation1.09E-02
130GO:0006259: DNA metabolic process1.09E-02
131GO:0030422: production of siRNA involved in RNA interference1.09E-02
132GO:0045036: protein targeting to chloroplast1.09E-02
133GO:0010015: root morphogenesis1.20E-02
134GO:0006265: DNA topological change1.20E-02
135GO:0009089: lysine biosynthetic process via diaminopimelate1.20E-02
136GO:0006352: DNA-templated transcription, initiation1.20E-02
137GO:0048229: gametophyte development1.20E-02
138GO:0016485: protein processing1.20E-02
139GO:0006790: sulfur compound metabolic process1.33E-02
140GO:0016024: CDP-diacylglycerol biosynthetic process1.33E-02
141GO:0050826: response to freezing1.45E-02
142GO:0010075: regulation of meristem growth1.45E-02
143GO:0006094: gluconeogenesis1.45E-02
144GO:2000012: regulation of auxin polar transport1.45E-02
145GO:0009785: blue light signaling pathway1.45E-02
146GO:0042546: cell wall biogenesis1.55E-02
147GO:0009934: regulation of meristem structural organization1.58E-02
148GO:0010207: photosystem II assembly1.58E-02
149GO:0046854: phosphatidylinositol phosphorylation1.71E-02
150GO:0009409: response to cold1.76E-02
151GO:0009664: plant-type cell wall organization1.87E-02
152GO:0005992: trehalose biosynthetic process1.99E-02
153GO:0009116: nucleoside metabolic process1.99E-02
154GO:0000027: ribosomal large subunit assembly1.99E-02
155GO:0019953: sexual reproduction2.14E-02
156GO:0006418: tRNA aminoacylation for protein translation2.14E-02
157GO:0006417: regulation of translation2.23E-02
158GO:0061077: chaperone-mediated protein folding2.29E-02
159GO:0031408: oxylipin biosynthetic process2.29E-02
160GO:0006730: one-carbon metabolic process2.44E-02
161GO:0007005: mitochondrion organization2.44E-02
162GO:0080092: regulation of pollen tube growth2.44E-02
163GO:0048367: shoot system development2.46E-02
164GO:0048316: seed development2.46E-02
165GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.60E-02
166GO:0010082: regulation of root meristem growth2.60E-02
167GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.67E-02
168GO:0042127: regulation of cell proliferation2.76E-02
169GO:0016117: carotenoid biosynthetic process2.92E-02
170GO:0009742: brassinosteroid mediated signaling pathway3.04E-02
171GO:0048653: anther development3.08E-02
172GO:0000226: microtubule cytoskeleton organization3.08E-02
173GO:0008033: tRNA processing3.08E-02
174GO:0006342: chromatin silencing3.25E-02
175GO:0009741: response to brassinosteroid3.25E-02
176GO:0010305: leaf vascular tissue pattern formation3.25E-02
177GO:0048868: pollen tube development3.25E-02
178GO:0006814: sodium ion transport3.42E-02
179GO:0007059: chromosome segregation3.42E-02
180GO:0009851: auxin biosynthetic process3.60E-02
181GO:0008654: phospholipid biosynthetic process3.60E-02
182GO:0016132: brassinosteroid biosynthetic process3.78E-02
183GO:0000302: response to reactive oxygen species3.78E-02
184GO:0009630: gravitropism3.96E-02
185GO:0031047: gene silencing by RNA3.96E-02
186GO:0010252: auxin homeostasis4.33E-02
187GO:0051607: defense response to virus4.71E-02
188GO:0000910: cytokinesis4.71E-02
189GO:0001666: response to hypoxia4.91E-02
RankGO TermAdjusted P value
1GO:0004358: glutamate N-acetyltransferase activity0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0003937: IMP cyclohydrolase activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
7GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
8GO:0019808: polyamine binding0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0004401: histidinol-phosphatase activity0.00E+00
13GO:0004056: argininosuccinate lyase activity0.00E+00
14GO:0003723: RNA binding6.90E-08
15GO:0004519: endonuclease activity5.92E-07
16GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity4.81E-05
17GO:0004176: ATP-dependent peptidase activity2.29E-04
18GO:0010347: L-galactose-1-phosphate phosphatase activity3.73E-04
19GO:0046480: galactolipid galactosyltransferase activity3.73E-04
20GO:0005227: calcium activated cation channel activity3.73E-04
21GO:0008836: diaminopimelate decarboxylase activity3.73E-04
22GO:0042834: peptidoglycan binding3.73E-04
23GO:0004813: alanine-tRNA ligase activity3.73E-04
24GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity3.73E-04
25GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity3.73E-04
26GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.73E-04
27GO:0046481: digalactosyldiacylglycerol synthase activity3.73E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.73E-04
29GO:0004830: tryptophan-tRNA ligase activity3.73E-04
30GO:0008237: metallopeptidase activity8.09E-04
31GO:0003852: 2-isopropylmalate synthase activity8.10E-04
32GO:0004814: arginine-tRNA ligase activity8.10E-04
33GO:0052832: inositol monophosphate 3-phosphatase activity8.10E-04
34GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.10E-04
35GO:0008934: inositol monophosphate 1-phosphatase activity8.10E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity8.10E-04
37GO:0010291: carotene beta-ring hydroxylase activity8.10E-04
38GO:0005089: Rho guanyl-nucleotide exchange factor activity9.70E-04
39GO:0046524: sucrose-phosphate synthase activity1.31E-03
40GO:0070330: aromatase activity1.31E-03
41GO:0017150: tRNA dihydrouridine synthase activity1.31E-03
42GO:0042781: 3'-tRNA processing endoribonuclease activity1.31E-03
43GO:0019843: rRNA binding1.46E-03
44GO:0004222: metalloendopeptidase activity1.47E-03
45GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.57E-03
46GO:0008508: bile acid:sodium symporter activity1.89E-03
47GO:0001872: (1->3)-beta-D-glucan binding1.89E-03
48GO:0035250: UDP-galactosyltransferase activity1.89E-03
49GO:0016656: monodehydroascorbate reductase (NADH) activity1.89E-03
50GO:0035197: siRNA binding1.89E-03
51GO:0043023: ribosomal large subunit binding1.89E-03
52GO:0001053: plastid sigma factor activity2.54E-03
53GO:0004845: uracil phosphoribosyltransferase activity2.54E-03
54GO:0016987: sigma factor activity2.54E-03
55GO:0005253: anion channel activity2.54E-03
56GO:0004659: prenyltransferase activity2.54E-03
57GO:0016279: protein-lysine N-methyltransferase activity2.54E-03
58GO:0005275: amine transmembrane transporter activity3.25E-03
59GO:0016773: phosphotransferase activity, alcohol group as acceptor3.25E-03
60GO:0018685: alkane 1-monooxygenase activity3.25E-03
61GO:0008519: ammonium transmembrane transporter activity4.02E-03
62GO:0005247: voltage-gated chloride channel activity4.02E-03
63GO:2001070: starch binding4.02E-03
64GO:0004605: phosphatidate cytidylyltransferase activity4.02E-03
65GO:0004332: fructose-bisphosphate aldolase activity4.02E-03
66GO:0016762: xyloglucan:xyloglucosyl transferase activity4.79E-03
67GO:0008195: phosphatidate phosphatase activity4.85E-03
68GO:0004849: uridine kinase activity4.85E-03
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.85E-03
70GO:0003872: 6-phosphofructokinase activity5.73E-03
71GO:0050660: flavin adenine dinucleotide binding5.80E-03
72GO:0005525: GTP binding6.55E-03
73GO:0016597: amino acid binding6.55E-03
74GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.64E-03
75GO:0016798: hydrolase activity, acting on glycosyl bonds8.18E-03
76GO:0042803: protein homodimerization activity9.10E-03
77GO:0008565: protein transporter activity9.35E-03
78GO:0009672: auxin:proton symporter activity9.74E-03
79GO:0004805: trehalose-phosphatase activity1.09E-02
80GO:0003746: translation elongation factor activity1.15E-02
81GO:0044183: protein binding involved in protein folding1.20E-02
82GO:0008559: xenobiotic-transporting ATPase activity1.20E-02
83GO:0003993: acid phosphatase activity1.21E-02
84GO:0004521: endoribonuclease activity1.33E-02
85GO:0000049: tRNA binding1.33E-02
86GO:0004089: carbonate dehydratase activity1.45E-02
87GO:0015095: magnesium ion transmembrane transporter activity1.45E-02
88GO:0019888: protein phosphatase regulator activity1.45E-02
89GO:0009982: pseudouridine synthase activity1.45E-02
90GO:0010329: auxin efflux transmembrane transporter activity1.45E-02
91GO:0008266: poly(U) RNA binding1.58E-02
92GO:0043621: protein self-association1.61E-02
93GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.85E-02
94GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.85E-02
95GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.85E-02
96GO:0003690: double-stranded DNA binding2.08E-02
97GO:0003729: mRNA binding2.10E-02
98GO:0003682: chromatin binding2.10E-02
99GO:0005345: purine nucleobase transmembrane transporter activity2.14E-02
100GO:0008408: 3'-5' exonuclease activity2.29E-02
101GO:0033612: receptor serine/threonine kinase binding2.29E-02
102GO:0003964: RNA-directed DNA polymerase activity2.29E-02
103GO:0003727: single-stranded RNA binding2.76E-02
104GO:0051082: unfolded protein binding2.87E-02
105GO:0004812: aminoacyl-tRNA ligase activity2.92E-02
106GO:0008536: Ran GTPase binding3.25E-02
107GO:0004527: exonuclease activity3.25E-02
108GO:0003713: transcription coactivator activity3.25E-02
109GO:0050662: coenzyme binding3.42E-02
110GO:0019901: protein kinase binding3.60E-02
111GO:0000156: phosphorelay response regulator activity4.14E-02
112GO:0003924: GTPase activity4.15E-02
113GO:0016791: phosphatase activity4.33E-02
114GO:0016722: oxidoreductase activity, oxidizing metal ions4.52E-02
115GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.52E-02
116GO:0009055: electron carrier activity4.52E-02
117GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.60E-02
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Gene type



Gene DE type