GO Enrichment Analysis of Co-expressed Genes with
AT3G43340
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
2 | GO:0015843: methylammonium transport | 0.00E+00 |
3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
4 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
5 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
6 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
8 | GO:0000455: enzyme-directed rRNA pseudouridine synthesis | 0.00E+00 |
9 | GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
10 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
11 | GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
12 | GO:0010157: response to chlorate | 0.00E+00 |
13 | GO:0006399: tRNA metabolic process | 0.00E+00 |
14 | GO:0009658: chloroplast organization | 8.52E-11 |
15 | GO:0042793: transcription from plastid promoter | 8.68E-11 |
16 | GO:0009451: RNA modification | 5.13E-08 |
17 | GO:0045037: protein import into chloroplast stroma | 2.08E-06 |
18 | GO:0009793: embryo development ending in seed dormancy | 6.70E-06 |
19 | GO:0000373: Group II intron splicing | 2.67E-05 |
20 | GO:0048437: floral organ development | 3.33E-04 |
21 | GO:0006400: tRNA modification | 3.33E-04 |
22 | GO:0009790: embryo development | 3.61E-04 |
23 | GO:0006419: alanyl-tRNA aminoacylation | 3.73E-04 |
24 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 3.73E-04 |
25 | GO:0010063: positive regulation of trichoblast fate specification | 3.73E-04 |
26 | GO:0010480: microsporocyte differentiation | 3.73E-04 |
27 | GO:0042371: vitamin K biosynthetic process | 3.73E-04 |
28 | GO:0043609: regulation of carbon utilization | 3.73E-04 |
29 | GO:0006436: tryptophanyl-tRNA aminoacylation | 3.73E-04 |
30 | GO:0009704: de-etiolation | 4.18E-04 |
31 | GO:0006353: DNA-templated transcription, termination | 4.18E-04 |
32 | GO:0006002: fructose 6-phosphate metabolic process | 5.11E-04 |
33 | GO:0009657: plastid organization | 5.11E-04 |
34 | GO:0009416: response to light stimulus | 6.97E-04 |
35 | GO:0006096: glycolytic process | 7.86E-04 |
36 | GO:0006420: arginyl-tRNA aminoacylation | 8.10E-04 |
37 | GO:0080005: photosystem stoichiometry adjustment | 8.10E-04 |
38 | GO:0060359: response to ammonium ion | 8.10E-04 |
39 | GO:0048255: mRNA stabilization | 8.10E-04 |
40 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 8.10E-04 |
41 | GO:0018026: peptidyl-lysine monomethylation | 8.10E-04 |
42 | GO:0009662: etioplast organization | 8.10E-04 |
43 | GO:0042325: regulation of phosphorylation | 8.10E-04 |
44 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 8.10E-04 |
45 | GO:1904143: positive regulation of carotenoid biosynthetic process | 8.10E-04 |
46 | GO:0042550: photosystem I stabilization | 8.10E-04 |
47 | GO:0010027: thylakoid membrane organization | 9.34E-04 |
48 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.31E-03 |
49 | GO:0006000: fructose metabolic process | 1.31E-03 |
50 | GO:0042780: tRNA 3'-end processing | 1.31E-03 |
51 | GO:0001578: microtubule bundle formation | 1.31E-03 |
52 | GO:0043157: response to cation stress | 1.31E-03 |
53 | GO:0010020: chloroplast fission | 1.41E-03 |
54 | GO:1902476: chloride transmembrane transport | 1.89E-03 |
55 | GO:0010071: root meristem specification | 1.89E-03 |
56 | GO:0010239: chloroplast mRNA processing | 1.89E-03 |
57 | GO:0044211: CTP salvage | 1.89E-03 |
58 | GO:0019048: modulation by virus of host morphology or physiology | 1.89E-03 |
59 | GO:0015696: ammonium transport | 1.89E-03 |
60 | GO:0046739: transport of virus in multicellular host | 1.89E-03 |
61 | GO:2000904: regulation of starch metabolic process | 1.89E-03 |
62 | GO:0006164: purine nucleotide biosynthetic process | 1.89E-03 |
63 | GO:0031048: chromatin silencing by small RNA | 1.89E-03 |
64 | GO:0051289: protein homotetramerization | 1.89E-03 |
65 | GO:0016556: mRNA modification | 1.89E-03 |
66 | GO:0043572: plastid fission | 1.89E-03 |
67 | GO:2001141: regulation of RNA biosynthetic process | 1.89E-03 |
68 | GO:0006306: DNA methylation | 2.37E-03 |
69 | GO:0006508: proteolysis | 2.37E-03 |
70 | GO:0016998: cell wall macromolecule catabolic process | 2.37E-03 |
71 | GO:0051322: anaphase | 2.54E-03 |
72 | GO:0015846: polyamine transport | 2.54E-03 |
73 | GO:0072488: ammonium transmembrane transport | 2.54E-03 |
74 | GO:0006021: inositol biosynthetic process | 2.54E-03 |
75 | GO:0051567: histone H3-K9 methylation | 2.54E-03 |
76 | GO:0044205: 'de novo' UMP biosynthetic process | 2.54E-03 |
77 | GO:0044206: UMP salvage | 2.54E-03 |
78 | GO:0006346: methylation-dependent chromatin silencing | 2.54E-03 |
79 | GO:0016123: xanthophyll biosynthetic process | 3.25E-03 |
80 | GO:0016131: brassinosteroid metabolic process | 3.25E-03 |
81 | GO:0010236: plastoquinone biosynthetic process | 3.25E-03 |
82 | GO:0009959: negative gravitropism | 4.02E-03 |
83 | GO:0006655: phosphatidylglycerol biosynthetic process | 4.02E-03 |
84 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 4.02E-03 |
85 | GO:0006206: pyrimidine nucleobase metabolic process | 4.02E-03 |
86 | GO:0009228: thiamine biosynthetic process | 4.02E-03 |
87 | GO:0016458: gene silencing | 4.02E-03 |
88 | GO:0009646: response to absence of light | 4.18E-03 |
89 | GO:0009955: adaxial/abaxial pattern specification | 4.85E-03 |
90 | GO:0042372: phylloquinone biosynthetic process | 4.85E-03 |
91 | GO:0006458: 'de novo' protein folding | 4.85E-03 |
92 | GO:0042026: protein refolding | 4.85E-03 |
93 | GO:0017148: negative regulation of translation | 4.85E-03 |
94 | GO:0009942: longitudinal axis specification | 4.85E-03 |
95 | GO:1901259: chloroplast rRNA processing | 4.85E-03 |
96 | GO:0030488: tRNA methylation | 4.85E-03 |
97 | GO:0032502: developmental process | 5.12E-03 |
98 | GO:0010583: response to cyclopentenone | 5.12E-03 |
99 | GO:0006955: immune response | 5.73E-03 |
100 | GO:0009772: photosynthetic electron transport in photosystem II | 5.73E-03 |
101 | GO:0006821: chloride transport | 5.73E-03 |
102 | GO:0010444: guard mother cell differentiation | 5.73E-03 |
103 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 5.73E-03 |
104 | GO:0015693: magnesium ion transport | 5.73E-03 |
105 | GO:0009828: plant-type cell wall loosening | 5.81E-03 |
106 | GO:0000105: histidine biosynthetic process | 6.65E-03 |
107 | GO:0009231: riboflavin biosynthetic process | 6.65E-03 |
108 | GO:0048564: photosystem I assembly | 6.65E-03 |
109 | GO:0006402: mRNA catabolic process | 6.65E-03 |
110 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 6.65E-03 |
111 | GO:0019375: galactolipid biosynthetic process | 6.65E-03 |
112 | GO:0042255: ribosome assembly | 6.65E-03 |
113 | GO:0070413: trehalose metabolism in response to stress | 6.65E-03 |
114 | GO:0006810: transport | 7.51E-03 |
115 | GO:0071482: cellular response to light stimulus | 7.64E-03 |
116 | GO:0009827: plant-type cell wall modification | 7.64E-03 |
117 | GO:0010052: guard cell differentiation | 7.64E-03 |
118 | GO:0010497: plasmodesmata-mediated intercellular transport | 7.64E-03 |
119 | GO:0006526: arginine biosynthetic process | 7.64E-03 |
120 | GO:0032544: plastid translation | 7.64E-03 |
121 | GO:0007389: pattern specification process | 7.64E-03 |
122 | GO:0010411: xyloglucan metabolic process | 8.18E-03 |
123 | GO:0000902: cell morphogenesis | 8.66E-03 |
124 | GO:0006098: pentose-phosphate shunt | 8.66E-03 |
125 | GO:0048481: plant ovule development | 9.07E-03 |
126 | GO:0009638: phototropism | 9.74E-03 |
127 | GO:0009098: leucine biosynthetic process | 9.74E-03 |
128 | GO:0031425: chloroplast RNA processing | 9.74E-03 |
129 | GO:0006949: syncytium formation | 1.09E-02 |
130 | GO:0006259: DNA metabolic process | 1.09E-02 |
131 | GO:0030422: production of siRNA involved in RNA interference | 1.09E-02 |
132 | GO:0045036: protein targeting to chloroplast | 1.09E-02 |
133 | GO:0010015: root morphogenesis | 1.20E-02 |
134 | GO:0006265: DNA topological change | 1.20E-02 |
135 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.20E-02 |
136 | GO:0006352: DNA-templated transcription, initiation | 1.20E-02 |
137 | GO:0048229: gametophyte development | 1.20E-02 |
138 | GO:0016485: protein processing | 1.20E-02 |
139 | GO:0006790: sulfur compound metabolic process | 1.33E-02 |
140 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.33E-02 |
141 | GO:0050826: response to freezing | 1.45E-02 |
142 | GO:0010075: regulation of meristem growth | 1.45E-02 |
143 | GO:0006094: gluconeogenesis | 1.45E-02 |
144 | GO:2000012: regulation of auxin polar transport | 1.45E-02 |
145 | GO:0009785: blue light signaling pathway | 1.45E-02 |
146 | GO:0042546: cell wall biogenesis | 1.55E-02 |
147 | GO:0009934: regulation of meristem structural organization | 1.58E-02 |
148 | GO:0010207: photosystem II assembly | 1.58E-02 |
149 | GO:0046854: phosphatidylinositol phosphorylation | 1.71E-02 |
150 | GO:0009409: response to cold | 1.76E-02 |
151 | GO:0009664: plant-type cell wall organization | 1.87E-02 |
152 | GO:0005992: trehalose biosynthetic process | 1.99E-02 |
153 | GO:0009116: nucleoside metabolic process | 1.99E-02 |
154 | GO:0000027: ribosomal large subunit assembly | 1.99E-02 |
155 | GO:0019953: sexual reproduction | 2.14E-02 |
156 | GO:0006418: tRNA aminoacylation for protein translation | 2.14E-02 |
157 | GO:0006417: regulation of translation | 2.23E-02 |
158 | GO:0061077: chaperone-mediated protein folding | 2.29E-02 |
159 | GO:0031408: oxylipin biosynthetic process | 2.29E-02 |
160 | GO:0006730: one-carbon metabolic process | 2.44E-02 |
161 | GO:0007005: mitochondrion organization | 2.44E-02 |
162 | GO:0080092: regulation of pollen tube growth | 2.44E-02 |
163 | GO:0048367: shoot system development | 2.46E-02 |
164 | GO:0048316: seed development | 2.46E-02 |
165 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.60E-02 |
166 | GO:0010082: regulation of root meristem growth | 2.60E-02 |
167 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.67E-02 |
168 | GO:0042127: regulation of cell proliferation | 2.76E-02 |
169 | GO:0016117: carotenoid biosynthetic process | 2.92E-02 |
170 | GO:0009742: brassinosteroid mediated signaling pathway | 3.04E-02 |
171 | GO:0048653: anther development | 3.08E-02 |
172 | GO:0000226: microtubule cytoskeleton organization | 3.08E-02 |
173 | GO:0008033: tRNA processing | 3.08E-02 |
174 | GO:0006342: chromatin silencing | 3.25E-02 |
175 | GO:0009741: response to brassinosteroid | 3.25E-02 |
176 | GO:0010305: leaf vascular tissue pattern formation | 3.25E-02 |
177 | GO:0048868: pollen tube development | 3.25E-02 |
178 | GO:0006814: sodium ion transport | 3.42E-02 |
179 | GO:0007059: chromosome segregation | 3.42E-02 |
180 | GO:0009851: auxin biosynthetic process | 3.60E-02 |
181 | GO:0008654: phospholipid biosynthetic process | 3.60E-02 |
182 | GO:0016132: brassinosteroid biosynthetic process | 3.78E-02 |
183 | GO:0000302: response to reactive oxygen species | 3.78E-02 |
184 | GO:0009630: gravitropism | 3.96E-02 |
185 | GO:0031047: gene silencing by RNA | 3.96E-02 |
186 | GO:0010252: auxin homeostasis | 4.33E-02 |
187 | GO:0051607: defense response to virus | 4.71E-02 |
188 | GO:0000910: cytokinesis | 4.71E-02 |
189 | GO:0001666: response to hypoxia | 4.91E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
2 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
3 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
4 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
5 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
6 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
7 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
8 | GO:0019808: polyamine binding | 0.00E+00 |
9 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
10 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
11 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
12 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
13 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
14 | GO:0003723: RNA binding | 6.90E-08 |
15 | GO:0004519: endonuclease activity | 5.92E-07 |
16 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.81E-05 |
17 | GO:0004176: ATP-dependent peptidase activity | 2.29E-04 |
18 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 3.73E-04 |
19 | GO:0046480: galactolipid galactosyltransferase activity | 3.73E-04 |
20 | GO:0005227: calcium activated cation channel activity | 3.73E-04 |
21 | GO:0008836: diaminopimelate decarboxylase activity | 3.73E-04 |
22 | GO:0042834: peptidoglycan binding | 3.73E-04 |
23 | GO:0004813: alanine-tRNA ligase activity | 3.73E-04 |
24 | GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity | 3.73E-04 |
25 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.73E-04 |
26 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 3.73E-04 |
27 | GO:0046481: digalactosyldiacylglycerol synthase activity | 3.73E-04 |
28 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.73E-04 |
29 | GO:0004830: tryptophan-tRNA ligase activity | 3.73E-04 |
30 | GO:0008237: metallopeptidase activity | 8.09E-04 |
31 | GO:0003852: 2-isopropylmalate synthase activity | 8.10E-04 |
32 | GO:0004814: arginine-tRNA ligase activity | 8.10E-04 |
33 | GO:0052832: inositol monophosphate 3-phosphatase activity | 8.10E-04 |
34 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 8.10E-04 |
35 | GO:0008934: inositol monophosphate 1-phosphatase activity | 8.10E-04 |
36 | GO:0052833: inositol monophosphate 4-phosphatase activity | 8.10E-04 |
37 | GO:0010291: carotene beta-ring hydroxylase activity | 8.10E-04 |
38 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 9.70E-04 |
39 | GO:0046524: sucrose-phosphate synthase activity | 1.31E-03 |
40 | GO:0070330: aromatase activity | 1.31E-03 |
41 | GO:0017150: tRNA dihydrouridine synthase activity | 1.31E-03 |
42 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.31E-03 |
43 | GO:0019843: rRNA binding | 1.46E-03 |
44 | GO:0004222: metalloendopeptidase activity | 1.47E-03 |
45 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.57E-03 |
46 | GO:0008508: bile acid:sodium symporter activity | 1.89E-03 |
47 | GO:0001872: (1->3)-beta-D-glucan binding | 1.89E-03 |
48 | GO:0035250: UDP-galactosyltransferase activity | 1.89E-03 |
49 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 1.89E-03 |
50 | GO:0035197: siRNA binding | 1.89E-03 |
51 | GO:0043023: ribosomal large subunit binding | 1.89E-03 |
52 | GO:0001053: plastid sigma factor activity | 2.54E-03 |
53 | GO:0004845: uracil phosphoribosyltransferase activity | 2.54E-03 |
54 | GO:0016987: sigma factor activity | 2.54E-03 |
55 | GO:0005253: anion channel activity | 2.54E-03 |
56 | GO:0004659: prenyltransferase activity | 2.54E-03 |
57 | GO:0016279: protein-lysine N-methyltransferase activity | 2.54E-03 |
58 | GO:0005275: amine transmembrane transporter activity | 3.25E-03 |
59 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 3.25E-03 |
60 | GO:0018685: alkane 1-monooxygenase activity | 3.25E-03 |
61 | GO:0008519: ammonium transmembrane transporter activity | 4.02E-03 |
62 | GO:0005247: voltage-gated chloride channel activity | 4.02E-03 |
63 | GO:2001070: starch binding | 4.02E-03 |
64 | GO:0004605: phosphatidate cytidylyltransferase activity | 4.02E-03 |
65 | GO:0004332: fructose-bisphosphate aldolase activity | 4.02E-03 |
66 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 4.79E-03 |
67 | GO:0008195: phosphatidate phosphatase activity | 4.85E-03 |
68 | GO:0004849: uridine kinase activity | 4.85E-03 |
69 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.85E-03 |
70 | GO:0003872: 6-phosphofructokinase activity | 5.73E-03 |
71 | GO:0050660: flavin adenine dinucleotide binding | 5.80E-03 |
72 | GO:0005525: GTP binding | 6.55E-03 |
73 | GO:0016597: amino acid binding | 6.55E-03 |
74 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 7.64E-03 |
75 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 8.18E-03 |
76 | GO:0042803: protein homodimerization activity | 9.10E-03 |
77 | GO:0008565: protein transporter activity | 9.35E-03 |
78 | GO:0009672: auxin:proton symporter activity | 9.74E-03 |
79 | GO:0004805: trehalose-phosphatase activity | 1.09E-02 |
80 | GO:0003746: translation elongation factor activity | 1.15E-02 |
81 | GO:0044183: protein binding involved in protein folding | 1.20E-02 |
82 | GO:0008559: xenobiotic-transporting ATPase activity | 1.20E-02 |
83 | GO:0003993: acid phosphatase activity | 1.21E-02 |
84 | GO:0004521: endoribonuclease activity | 1.33E-02 |
85 | GO:0000049: tRNA binding | 1.33E-02 |
86 | GO:0004089: carbonate dehydratase activity | 1.45E-02 |
87 | GO:0015095: magnesium ion transmembrane transporter activity | 1.45E-02 |
88 | GO:0019888: protein phosphatase regulator activity | 1.45E-02 |
89 | GO:0009982: pseudouridine synthase activity | 1.45E-02 |
90 | GO:0010329: auxin efflux transmembrane transporter activity | 1.45E-02 |
91 | GO:0008266: poly(U) RNA binding | 1.58E-02 |
92 | GO:0043621: protein self-association | 1.61E-02 |
93 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.85E-02 |
94 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.85E-02 |
95 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.85E-02 |
96 | GO:0003690: double-stranded DNA binding | 2.08E-02 |
97 | GO:0003729: mRNA binding | 2.10E-02 |
98 | GO:0003682: chromatin binding | 2.10E-02 |
99 | GO:0005345: purine nucleobase transmembrane transporter activity | 2.14E-02 |
100 | GO:0008408: 3'-5' exonuclease activity | 2.29E-02 |
101 | GO:0033612: receptor serine/threonine kinase binding | 2.29E-02 |
102 | GO:0003964: RNA-directed DNA polymerase activity | 2.29E-02 |
103 | GO:0003727: single-stranded RNA binding | 2.76E-02 |
104 | GO:0051082: unfolded protein binding | 2.87E-02 |
105 | GO:0004812: aminoacyl-tRNA ligase activity | 2.92E-02 |
106 | GO:0008536: Ran GTPase binding | 3.25E-02 |
107 | GO:0004527: exonuclease activity | 3.25E-02 |
108 | GO:0003713: transcription coactivator activity | 3.25E-02 |
109 | GO:0050662: coenzyme binding | 3.42E-02 |
110 | GO:0019901: protein kinase binding | 3.60E-02 |
111 | GO:0000156: phosphorelay response regulator activity | 4.14E-02 |
112 | GO:0003924: GTPase activity | 4.15E-02 |
113 | GO:0016791: phosphatase activity | 4.33E-02 |
114 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 4.52E-02 |
115 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 4.52E-02 |
116 | GO:0009055: electron carrier activity | 4.52E-02 |
117 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.60E-02 |