Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G32930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046460: neutral lipid biosynthetic process0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0031116: positive regulation of microtubule polymerization0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0042407: cristae formation0.00E+00
10GO:0042817: pyridoxal metabolic process0.00E+00
11GO:0009106: lipoate metabolic process0.00E+00
12GO:0090042: tubulin deacetylation0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0006114: glycerol biosynthetic process0.00E+00
16GO:0018023: peptidyl-lysine trimethylation0.00E+00
17GO:0070125: mitochondrial translational elongation0.00E+00
18GO:0006429: leucyl-tRNA aminoacylation0.00E+00
19GO:0009249: protein lipoylation0.00E+00
20GO:1905421: regulation of plant organ morphogenesis0.00E+00
21GO:0043488: regulation of mRNA stability0.00E+00
22GO:0030155: regulation of cell adhesion0.00E+00
23GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
24GO:0009658: chloroplast organization5.67E-06
25GO:0006353: DNA-templated transcription, termination4.20E-05
26GO:0006415: translational termination1.63E-04
27GO:0032543: mitochondrial translation2.77E-04
28GO:0045038: protein import into chloroplast thylakoid membrane2.77E-04
29GO:0016123: xanthophyll biosynthetic process2.77E-04
30GO:0010027: thylakoid membrane organization3.42E-04
31GO:0006458: 'de novo' protein folding5.17E-04
32GO:0042026: protein refolding5.17E-04
33GO:0009793: embryo development ending in seed dormancy5.28E-04
34GO:0061077: chaperone-mediated protein folding5.70E-04
35GO:2000025: regulation of leaf formation5.92E-04
36GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.92E-04
37GO:0000012: single strand break repair5.92E-04
38GO:0043266: regulation of potassium ion transport5.92E-04
39GO:0042547: cell wall modification involved in multidimensional cell growth5.92E-04
40GO:0019478: D-amino acid catabolic process5.92E-04
41GO:0042371: vitamin K biosynthetic process5.92E-04
42GO:2000021: regulation of ion homeostasis5.92E-04
43GO:1902458: positive regulation of stomatal opening5.92E-04
44GO:0006747: FAD biosynthetic process5.92E-04
45GO:0006419: alanyl-tRNA aminoacylation5.92E-04
46GO:0000476: maturation of 4.5S rRNA5.92E-04
47GO:0009443: pyridoxal 5'-phosphate salvage5.92E-04
48GO:0000967: rRNA 5'-end processing5.92E-04
49GO:0006730: one-carbon metabolic process6.42E-04
50GO:0000105: histidine biosynthetic process8.23E-04
51GO:0009657: plastid organization9.99E-04
52GO:0032544: plastid translation9.99E-04
53GO:0006739: NADP metabolic process1.27E-03
54GO:1900871: chloroplast mRNA modification1.27E-03
55GO:0018026: peptidyl-lysine monomethylation1.27E-03
56GO:0006423: cysteinyl-tRNA aminoacylation1.27E-03
57GO:0006435: threonyl-tRNA aminoacylation1.27E-03
58GO:0009220: pyrimidine ribonucleotide biosynthetic process1.27E-03
59GO:0001682: tRNA 5'-leader removal1.27E-03
60GO:1903426: regulation of reactive oxygen species biosynthetic process1.27E-03
61GO:0015804: neutral amino acid transport1.27E-03
62GO:0034470: ncRNA processing1.27E-03
63GO:0010198: synergid death1.27E-03
64GO:1900865: chloroplast RNA modification1.41E-03
65GO:0006782: protoporphyrinogen IX biosynthetic process1.65E-03
66GO:0045036: protein targeting to chloroplast1.65E-03
67GO:0006954: inflammatory response2.10E-03
68GO:0010623: programmed cell death involved in cell development2.10E-03
69GO:0051604: protein maturation2.10E-03
70GO:0015940: pantothenate biosynthetic process2.10E-03
71GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.10E-03
72GO:0001578: microtubule bundle formation2.10E-03
73GO:0045493: xylan catabolic process2.10E-03
74GO:0005977: glycogen metabolic process2.10E-03
75GO:0033591: response to L-ascorbic acid2.10E-03
76GO:0048281: inflorescence morphogenesis2.10E-03
77GO:0045037: protein import into chloroplast stroma2.19E-03
78GO:2000012: regulation of auxin polar transport2.49E-03
79GO:0009627: systemic acquired resistance2.59E-03
80GO:0015995: chlorophyll biosynthetic process2.77E-03
81GO:0008615: pyridoxine biosynthetic process3.04E-03
82GO:0006424: glutamyl-tRNA aminoacylation3.04E-03
83GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.04E-03
84GO:0010148: transpiration3.04E-03
85GO:0016556: mRNA modification3.04E-03
86GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.04E-03
87GO:0009102: biotin biosynthetic process3.04E-03
88GO:0010239: chloroplast mRNA processing3.04E-03
89GO:0090351: seedling development3.15E-03
90GO:0022622: root system development4.10E-03
91GO:0071483: cellular response to blue light4.10E-03
92GO:0006734: NADH metabolic process4.10E-03
93GO:0044205: 'de novo' UMP biosynthetic process4.10E-03
94GO:0010508: positive regulation of autophagy4.10E-03
95GO:0007020: microtubule nucleation4.10E-03
96GO:0010021: amylopectin biosynthetic process4.10E-03
97GO:0042274: ribosomal small subunit biogenesis4.10E-03
98GO:0051322: anaphase4.10E-03
99GO:0009765: photosynthesis, light harvesting4.10E-03
100GO:0045087: innate immune response4.28E-03
101GO:0007005: mitochondrion organization5.20E-03
102GO:0046785: microtubule polymerization5.27E-03
103GO:0016120: carotene biosynthetic process5.27E-03
104GO:0010236: plastoquinone biosynthetic process5.27E-03
105GO:0009107: lipoate biosynthetic process5.27E-03
106GO:0009790: embryo development5.38E-03
107GO:0009306: protein secretion6.18E-03
108GO:0006413: translational initiation6.24E-03
109GO:0040008: regulation of growth6.48E-03
110GO:0042793: transcription from plastid promoter6.54E-03
111GO:0010190: cytochrome b6f complex assembly6.54E-03
112GO:0016554: cytidine to uridine editing6.54E-03
113GO:0032973: amino acid export6.54E-03
114GO:0050665: hydrogen peroxide biosynthetic process6.54E-03
115GO:0016117: carotenoid biosynthetic process6.70E-03
116GO:0008033: tRNA processing7.25E-03
117GO:0009733: response to auxin7.44E-03
118GO:0017148: negative regulation of translation7.90E-03
119GO:0034389: lipid particle organization7.90E-03
120GO:1901259: chloroplast rRNA processing7.90E-03
121GO:0030488: tRNA methylation7.90E-03
122GO:0009854: oxidative photosynthetic carbon pathway7.90E-03
123GO:0080086: stamen filament development7.90E-03
124GO:0009648: photoperiodism7.90E-03
125GO:0042372: phylloquinone biosynthetic process7.90E-03
126GO:0070370: cellular heat acclimation9.35E-03
127GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.35E-03
128GO:0010196: nonphotochemical quenching9.35E-03
129GO:0010444: guard mother cell differentiation9.35E-03
130GO:0006400: tRNA modification9.35E-03
131GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.35E-03
132GO:0010103: stomatal complex morphogenesis9.35E-03
133GO:0032880: regulation of protein localization9.35E-03
134GO:0009395: phospholipid catabolic process9.35E-03
135GO:0048528: post-embryonic root development9.35E-03
136GO:0009772: photosynthetic electron transport in photosystem II9.35E-03
137GO:0043090: amino acid import9.35E-03
138GO:0006605: protein targeting1.09E-02
139GO:0042255: ribosome assembly1.09E-02
140GO:0046620: regulation of organ growth1.09E-02
141GO:2000070: regulation of response to water deprivation1.09E-02
142GO:0070413: trehalose metabolism in response to stress1.09E-02
143GO:0009231: riboflavin biosynthetic process1.09E-02
144GO:0052543: callose deposition in cell wall1.09E-02
145GO:0006402: mRNA catabolic process1.09E-02
146GO:0010204: defense response signaling pathway, resistance gene-independent1.25E-02
147GO:0001558: regulation of cell growth1.25E-02
148GO:0071482: cellular response to light stimulus1.25E-02
149GO:0022900: electron transport chain1.25E-02
150GO:0010206: photosystem II repair1.43E-02
151GO:0080144: amino acid homeostasis1.43E-02
152GO:0006098: pentose-phosphate shunt1.43E-02
153GO:0019432: triglyceride biosynthetic process1.43E-02
154GO:0006783: heme biosynthetic process1.43E-02
155GO:0000373: Group II intron splicing1.43E-02
156GO:0009821: alkaloid biosynthetic process1.43E-02
157GO:0043067: regulation of programmed cell death1.60E-02
158GO:0006779: porphyrin-containing compound biosynthetic process1.60E-02
159GO:0006949: syncytium formation1.79E-02
160GO:0006259: DNA metabolic process1.79E-02
161GO:0006265: DNA topological change1.99E-02
162GO:0009089: lysine biosynthetic process via diaminopimelate1.99E-02
163GO:0009073: aromatic amino acid family biosynthetic process1.99E-02
164GO:1903507: negative regulation of nucleic acid-templated transcription1.99E-02
165GO:0006352: DNA-templated transcription, initiation1.99E-02
166GO:0009684: indoleacetic acid biosynthetic process1.99E-02
167GO:0019684: photosynthesis, light reaction1.99E-02
168GO:0007568: aging2.13E-02
169GO:0050826: response to freezing2.40E-02
170GO:0006094: gluconeogenesis2.40E-02
171GO:0010207: photosystem II assembly2.61E-02
172GO:0006302: double-strand break repair2.61E-02
173GO:0045490: pectin catabolic process2.73E-02
174GO:0019853: L-ascorbic acid biosynthetic process2.83E-02
175GO:0071732: cellular response to nitric oxide2.83E-02
176GO:0000162: tryptophan biosynthetic process3.06E-02
177GO:0006071: glycerol metabolic process3.06E-02
178GO:0006833: water transport3.06E-02
179GO:0030150: protein import into mitochondrial matrix3.30E-02
180GO:0007010: cytoskeleton organization3.30E-02
181GO:0005992: trehalose biosynthetic process3.30E-02
182GO:0009116: nucleoside metabolic process3.30E-02
183GO:0009944: polarity specification of adaxial/abaxial axis3.30E-02
184GO:0009965: leaf morphogenesis3.39E-02
185GO:0008380: RNA splicing3.40E-02
186GO:0005975: carbohydrate metabolic process3.52E-02
187GO:0016575: histone deacetylation3.54E-02
188GO:0006418: tRNA aminoacylation for protein translation3.54E-02
189GO:0043622: cortical microtubule organization3.54E-02
190GO:0051302: regulation of cell division3.54E-02
191GO:0003333: amino acid transmembrane transport3.78E-02
192GO:0048511: rhythmic process3.78E-02
193GO:0009664: plant-type cell wall organization3.79E-02
194GO:2000022: regulation of jasmonic acid mediated signaling pathway4.04E-02
195GO:0031348: negative regulation of defense response4.04E-02
196GO:0009814: defense response, incompatible interaction4.04E-02
197GO:0006364: rRNA processing4.06E-02
198GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.29E-02
199GO:0071369: cellular response to ethylene stimulus4.29E-02
200GO:0001944: vasculature development4.29E-02
201GO:0006012: galactose metabolic process4.29E-02
202GO:0010089: xylem development4.55E-02
203GO:0008284: positive regulation of cell proliferation4.82E-02
204GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.82E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0051721: protein phosphatase 2A binding0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0045435: lycopene epsilon cyclase activity0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity0.00E+00
16GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
17GO:0015267: channel activity0.00E+00
18GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
19GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
20GO:0005048: signal sequence binding0.00E+00
21GO:0004076: biotin synthase activity0.00E+00
22GO:0043136: glycerol-3-phosphatase activity0.00E+00
23GO:0000121: glycerol-1-phosphatase activity0.00E+00
24GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
25GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
26GO:0043864: indoleacetamide hydrolase activity0.00E+00
27GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.52E-05
28GO:0003747: translation release factor activity7.90E-05
29GO:0016149: translation release factor activity, codon specific1.07E-04
30GO:0016851: magnesium chelatase activity1.07E-04
31GO:0016788: hydrolase activity, acting on ester bonds2.40E-04
32GO:0004040: amidase activity2.77E-04
33GO:0003723: RNA binding3.52E-04
34GO:0005525: GTP binding4.15E-04
35GO:0005528: FK506 binding4.43E-04
36GO:0004813: alanine-tRNA ligase activity5.92E-04
37GO:0004853: uroporphyrinogen decarboxylase activity5.92E-04
38GO:0052857: NADPHX epimerase activity5.92E-04
39GO:0052856: NADHX epimerase activity5.92E-04
40GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.92E-04
41GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.92E-04
42GO:0005227: calcium activated cation channel activity5.92E-04
43GO:0004733: pyridoxamine-phosphate oxidase activity5.92E-04
44GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.92E-04
45GO:0004856: xylulokinase activity5.92E-04
46GO:0030570: pectate lyase activity7.18E-04
47GO:0043022: ribosome binding8.23E-04
48GO:0004033: aldo-keto reductase (NADP) activity8.23E-04
49GO:0004829: threonine-tRNA ligase activity1.27E-03
50GO:0019156: isoamylase activity1.27E-03
51GO:0003919: FMN adenylyltransferase activity1.27E-03
52GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.27E-03
53GO:0015172: acidic amino acid transmembrane transporter activity1.27E-03
54GO:0010291: carotene beta-ring hydroxylase activity1.27E-03
55GO:0017118: lipoyltransferase activity1.27E-03
56GO:0009977: proton motive force dependent protein transmembrane transporter activity1.27E-03
57GO:0016415: octanoyltransferase activity1.27E-03
58GO:0004817: cysteine-tRNA ligase activity1.27E-03
59GO:0044183: protein binding involved in protein folding1.91E-03
60GO:0003913: DNA photolyase activity2.10E-03
61GO:0002161: aminoacyl-tRNA editing activity2.10E-03
62GO:0004557: alpha-galactosidase activity2.10E-03
63GO:0070402: NADPH binding2.10E-03
64GO:0052692: raffinose alpha-galactosidase activity2.10E-03
65GO:0004180: carboxypeptidase activity2.10E-03
66GO:0008266: poly(U) RNA binding2.81E-03
67GO:0008236: serine-type peptidase activity2.96E-03
68GO:0019201: nucleotide kinase activity3.04E-03
69GO:0015175: neutral amino acid transmembrane transporter activity3.04E-03
70GO:0048487: beta-tubulin binding3.04E-03
71GO:0004792: thiosulfate sulfurtransferase activity3.04E-03
72GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.04E-03
73GO:0016656: monodehydroascorbate reductase (NADH) activity3.04E-03
74GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.04E-03
75GO:0043023: ribosomal large subunit binding3.04E-03
76GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.04E-03
77GO:0001872: (1->3)-beta-D-glucan binding3.04E-03
78GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.04E-03
79GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.16E-03
80GO:0003924: GTPase activity3.17E-03
81GO:0009044: xylan 1,4-beta-xylosidase activity4.10E-03
82GO:0016987: sigma factor activity4.10E-03
83GO:0019199: transmembrane receptor protein kinase activity4.10E-03
84GO:0042277: peptide binding4.10E-03
85GO:0008891: glycolate oxidase activity4.10E-03
86GO:0046556: alpha-L-arabinofuranosidase activity4.10E-03
87GO:0004659: prenyltransferase activity4.10E-03
88GO:0016279: protein-lysine N-methyltransferase activity4.10E-03
89GO:0001053: plastid sigma factor activity4.10E-03
90GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.10E-03
91GO:0004045: aminoacyl-tRNA hydrolase activity4.10E-03
92GO:0004176: ATP-dependent peptidase activity4.75E-03
93GO:0016829: lyase activity4.79E-03
94GO:0045300: acyl-[acyl-carrier-protein] desaturase activity5.27E-03
95GO:0016773: phosphotransferase activity, alcohol group as acceptor5.27E-03
96GO:0004556: alpha-amylase activity6.54E-03
97GO:0042578: phosphoric ester hydrolase activity6.54E-03
98GO:0080030: methyl indole-3-acetate esterase activity6.54E-03
99GO:0004332: fructose-bisphosphate aldolase activity6.54E-03
100GO:0004526: ribonuclease P activity6.54E-03
101GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.23E-03
102GO:0004017: adenylate kinase activity7.90E-03
103GO:0003730: mRNA 3'-UTR binding7.90E-03
104GO:0004144: diacylglycerol O-acyltransferase activity7.90E-03
105GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.90E-03
106GO:0008195: phosphatidate phosphatase activity7.90E-03
107GO:0010181: FMN binding8.42E-03
108GO:0003743: translation initiation factor activity8.81E-03
109GO:0003690: double-stranded DNA binding9.09E-03
110GO:0009881: photoreceptor activity9.35E-03
111GO:0008312: 7S RNA binding1.09E-02
112GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.25E-02
113GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.25E-02
114GO:0008237: metallopeptidase activity1.25E-02
115GO:0016597: amino acid binding1.33E-02
116GO:0051082: unfolded protein binding1.37E-02
117GO:0016844: strictosidine synthase activity1.60E-02
118GO:0004805: trehalose-phosphatase activity1.79E-02
119GO:0047372: acylglycerol lipase activity1.99E-02
120GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.13E-02
121GO:0000049: tRNA binding2.19E-02
122GO:0003746: translation elongation factor activity2.34E-02
123GO:0004565: beta-galactosidase activity2.40E-02
124GO:0015266: protein channel activity2.40E-02
125GO:0004089: carbonate dehydratase activity2.40E-02
126GO:0031072: heat shock protein binding2.40E-02
127GO:0009982: pseudouridine synthase activity2.40E-02
128GO:0003993: acid phosphatase activity2.45E-02
129GO:0008083: growth factor activity2.61E-02
130GO:0008017: microtubule binding2.89E-02
131GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.06E-02
132GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.06E-02
133GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.06E-02
134GO:0016787: hydrolase activity3.22E-02
135GO:0043621: protein self-association3.27E-02
136GO:0051537: 2 iron, 2 sulfur cluster binding3.27E-02
137GO:0003714: transcription corepressor activity3.30E-02
138GO:0051536: iron-sulfur cluster binding3.30E-02
139GO:0004407: histone deacetylase activity3.30E-02
140GO:0003729: mRNA binding3.38E-02
141GO:0051087: chaperone binding3.54E-02
142GO:0004519: endonuclease activity3.76E-02
143GO:0008168: methyltransferase activity4.47E-02
144GO:0015171: amino acid transmembrane transporter activity4.49E-02
145GO:0003727: single-stranded RNA binding4.55E-02
146GO:0003756: protein disulfide isomerase activity4.55E-02
147GO:0004812: aminoacyl-tRNA ligase activity4.82E-02
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Gene type



Gene DE type