Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G28910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042794: rRNA transcription from plastid promoter0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:0097164: ammonium ion metabolic process0.00E+00
10GO:0070455: positive regulation of heme biosynthetic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0042793: transcription from plastid promoter6.84E-10
15GO:0009734: auxin-activated signaling pathway1.69E-09
16GO:0046620: regulation of organ growth1.07E-08
17GO:0009926: auxin polar transport1.81E-06
18GO:0009733: response to auxin3.58E-05
19GO:0009658: chloroplast organization4.82E-05
20GO:0009451: RNA modification8.67E-05
21GO:0009416: response to light stimulus9.69E-05
22GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.04E-04
23GO:2000038: regulation of stomatal complex development1.92E-04
24GO:0010252: auxin homeostasis2.74E-04
25GO:0040008: regulation of growth3.91E-04
26GO:0009913: epidermal cell differentiation4.06E-04
27GO:0016998: cell wall macromolecule catabolic process6.04E-04
28GO:0034757: negative regulation of iron ion transport6.10E-04
29GO:0042659: regulation of cell fate specification6.10E-04
30GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.10E-04
31GO:1905039: carboxylic acid transmembrane transport6.10E-04
32GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.10E-04
33GO:1905200: gibberellic acid transmembrane transport6.10E-04
34GO:0080112: seed growth6.10E-04
35GO:0090558: plant epidermis development6.10E-04
36GO:0010063: positive regulation of trichoblast fate specification6.10E-04
37GO:0010480: microsporocyte differentiation6.10E-04
38GO:1903866: palisade mesophyll development6.10E-04
39GO:0035987: endodermal cell differentiation6.10E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation6.10E-04
41GO:0006955: immune response6.90E-04
42GO:0048437: floral organ development6.90E-04
43GO:0007389: pattern specification process1.04E-03
44GO:0000902: cell morphogenesis1.25E-03
45GO:2000123: positive regulation of stomatal complex development1.31E-03
46GO:1902326: positive regulation of chlorophyll biosynthetic process1.31E-03
47GO:0070981: L-asparagine biosynthetic process1.31E-03
48GO:0010569: regulation of double-strand break repair via homologous recombination1.31E-03
49GO:0010271: regulation of chlorophyll catabolic process1.31E-03
50GO:0018026: peptidyl-lysine monomethylation1.31E-03
51GO:0071497: cellular response to freezing1.31E-03
52GO:0009662: etioplast organization1.31E-03
53GO:1900033: negative regulation of trichome patterning1.31E-03
54GO:1904143: positive regulation of carotenoid biosynthetic process1.31E-03
55GO:0080009: mRNA methylation1.31E-03
56GO:0006529: asparagine biosynthetic process1.31E-03
57GO:0032502: developmental process1.61E-03
58GO:0006535: cysteine biosynthetic process from serine1.72E-03
59GO:0090708: specification of plant organ axis polarity2.16E-03
60GO:0080117: secondary growth2.16E-03
61GO:0090391: granum assembly2.16E-03
62GO:0042780: tRNA 3'-end processing2.16E-03
63GO:0001578: microtubule bundle formation2.16E-03
64GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.16E-03
65GO:0010027: thylakoid membrane organization2.38E-03
66GO:0009767: photosynthetic electron transport chain2.60E-03
67GO:0010411: xyloglucan metabolic process2.93E-03
68GO:0010239: chloroplast mRNA processing3.14E-03
69GO:0009800: cinnamic acid biosynthetic process3.14E-03
70GO:0044211: CTP salvage3.14E-03
71GO:0033014: tetrapyrrole biosynthetic process3.14E-03
72GO:0010306: rhamnogalacturonan II biosynthetic process3.14E-03
73GO:0015696: ammonium transport3.14E-03
74GO:0046739: transport of virus in multicellular host3.14E-03
75GO:1901332: negative regulation of lateral root development3.14E-03
76GO:2000904: regulation of starch metabolic process3.14E-03
77GO:0051289: protein homotetramerization3.14E-03
78GO:0010371: regulation of gibberellin biosynthetic process3.14E-03
79GO:1902476: chloride transmembrane transport3.14E-03
80GO:0010071: root meristem specification3.14E-03
81GO:0051513: regulation of monopolar cell growth3.14E-03
82GO:0048481: plant ovule development3.35E-03
83GO:0009742: brassinosteroid mediated signaling pathway3.53E-03
84GO:0000160: phosphorelay signal transduction system3.57E-03
85GO:0006468: protein phosphorylation3.78E-03
86GO:0019344: cysteine biosynthetic process4.08E-03
87GO:0051322: anaphase4.23E-03
88GO:0072488: ammonium transmembrane transport4.23E-03
89GO:0030104: water homeostasis4.23E-03
90GO:0006221: pyrimidine nucleotide biosynthetic process4.23E-03
91GO:0046656: folic acid biosynthetic process4.23E-03
92GO:0006021: inositol biosynthetic process4.23E-03
93GO:0044206: UMP salvage4.23E-03
94GO:0006346: methylation-dependent chromatin silencing4.23E-03
95GO:1901141: regulation of lignin biosynthetic process4.23E-03
96GO:0006479: protein methylation4.23E-03
97GO:0048629: trichome patterning4.23E-03
98GO:0032876: negative regulation of DNA endoreduplication5.44E-03
99GO:0030308: negative regulation of cell growth5.44E-03
100GO:0010375: stomatal complex patterning5.44E-03
101GO:0006544: glycine metabolic process5.44E-03
102GO:0048497: maintenance of floral organ identity5.44E-03
103GO:0009107: lipoate biosynthetic process5.44E-03
104GO:1902183: regulation of shoot apical meristem development5.44E-03
105GO:0016123: xanthophyll biosynthetic process5.44E-03
106GO:0010082: regulation of root meristem growth5.94E-03
107GO:0042546: cell wall biogenesis6.61E-03
108GO:0006655: phosphatidylglycerol biosynthetic process6.74E-03
109GO:0016554: cytidine to uridine editing6.74E-03
110GO:1902456: regulation of stomatal opening6.74E-03
111GO:0048831: regulation of shoot system development6.74E-03
112GO:0010315: auxin efflux6.74E-03
113GO:0006559: L-phenylalanine catabolic process6.74E-03
114GO:0006206: pyrimidine nucleobase metabolic process6.74E-03
115GO:0018258: protein O-linked glycosylation via hydroxyproline6.74E-03
116GO:0009643: photosynthetic acclimation6.74E-03
117GO:0006563: L-serine metabolic process6.74E-03
118GO:0010405: arabinogalactan protein metabolic process6.74E-03
119GO:0010304: PSII associated light-harvesting complex II catabolic process6.74E-03
120GO:2000067: regulation of root morphogenesis8.15E-03
121GO:0009955: adaxial/abaxial pattern specification8.15E-03
122GO:0010067: procambium histogenesis8.15E-03
123GO:0009942: longitudinal axis specification8.15E-03
124GO:0048509: regulation of meristem development8.15E-03
125GO:0046654: tetrahydrofolate biosynthetic process8.15E-03
126GO:0030488: tRNA methylation8.15E-03
127GO:1901259: chloroplast rRNA processing8.15E-03
128GO:2000037: regulation of stomatal complex patterning8.15E-03
129GO:0010310: regulation of hydrogen peroxide metabolic process8.15E-03
130GO:0009741: response to brassinosteroid8.19E-03
131GO:0009646: response to absence of light8.81E-03
132GO:0009736: cytokinin-activated signaling pathway9.21E-03
133GO:0048825: cotyledon development9.46E-03
134GO:0006821: chloride transport9.66E-03
135GO:0009396: folic acid-containing compound biosynthetic process9.66E-03
136GO:0010103: stomatal complex morphogenesis9.66E-03
137GO:0009610: response to symbiotic fungus9.66E-03
138GO:0080156: mitochondrial mRNA modification1.01E-02
139GO:0010583: response to cyclopentenone1.08E-02
140GO:0001522: pseudouridine synthesis1.13E-02
141GO:0009642: response to light intensity1.13E-02
142GO:0042255: ribosome assembly1.13E-02
143GO:0006353: DNA-templated transcription, termination1.13E-02
144GO:0048766: root hair initiation1.13E-02
145GO:0055075: potassium ion homeostasis1.13E-02
146GO:0000105: histidine biosynthetic process1.13E-02
147GO:0052543: callose deposition in cell wall1.13E-02
148GO:0009828: plant-type cell wall loosening1.23E-02
149GO:0010497: plasmodesmata-mediated intercellular transport1.29E-02
150GO:0032544: plastid translation1.29E-02
151GO:0009051: pentose-phosphate shunt, oxidative branch1.47E-02
152GO:2000024: regulation of leaf development1.47E-02
153GO:0006783: heme biosynthetic process1.47E-02
154GO:0000373: Group II intron splicing1.47E-02
155GO:0048589: developmental growth1.47E-02
156GO:0009638: phototropism1.66E-02
157GO:0035999: tetrahydrofolate interconversion1.66E-02
158GO:2000280: regulation of root development1.66E-02
159GO:0006349: regulation of gene expression by genetic imprinting1.66E-02
160GO:1900865: chloroplast RNA modification1.66E-02
161GO:0016567: protein ubiquitination1.75E-02
162GO:0010048: vernalization response1.85E-02
163GO:0048829: root cap development1.85E-02
164GO:0009641: shade avoidance1.85E-02
165GO:0006949: syncytium formation1.85E-02
166GO:0080167: response to karrikin2.00E-02
167GO:0048767: root hair elongation2.03E-02
168GO:0010015: root morphogenesis2.05E-02
169GO:0015770: sucrose transport2.05E-02
170GO:0009750: response to fructose2.05E-02
171GO:0048229: gametophyte development2.05E-02
172GO:0009058: biosynthetic process2.06E-02
173GO:0008361: regulation of cell size2.26E-02
174GO:0006790: sulfur compound metabolic process2.26E-02
175GO:0010152: pollen maturation2.26E-02
176GO:0016024: CDP-diacylglycerol biosynthetic process2.26E-02
177GO:0010105: negative regulation of ethylene-activated signaling pathway2.26E-02
178GO:0010588: cotyledon vascular tissue pattern formation2.48E-02
179GO:0010102: lateral root morphogenesis2.48E-02
180GO:0009785: blue light signaling pathway2.48E-02
181GO:0006006: glucose metabolic process2.48E-02
182GO:0009691: cytokinin biosynthetic process2.48E-02
183GO:0010075: regulation of meristem growth2.48E-02
184GO:0010207: photosystem II assembly2.70E-02
185GO:0006541: glutamine metabolic process2.70E-02
186GO:0010020: chloroplast fission2.70E-02
187GO:0010223: secondary shoot formation2.70E-02
188GO:0010540: basipetal auxin transport2.70E-02
189GO:0009934: regulation of meristem structural organization2.70E-02
190GO:0080188: RNA-directed DNA methylation2.93E-02
191GO:0009901: anther dehiscence2.93E-02
192GO:0090351: seedling development2.93E-02
193GO:0046854: phosphatidylinositol phosphorylation2.93E-02
194GO:0006071: glycerol metabolic process3.16E-02
195GO:0006833: water transport3.16E-02
196GO:0009739: response to gibberellin3.32E-02
197GO:0016042: lipid catabolic process3.40E-02
198GO:0009944: polarity specification of adaxial/abaxial axis3.41E-02
199GO:0080147: root hair cell development3.41E-02
200GO:0000027: ribosomal large subunit assembly3.41E-02
201GO:0007166: cell surface receptor signaling pathway3.41E-02
202GO:0051302: regulation of cell division3.65E-02
203GO:0006418: tRNA aminoacylation for protein translation3.65E-02
204GO:0010073: meristem maintenance3.65E-02
205GO:0006306: DNA methylation3.91E-02
206GO:0003333: amino acid transmembrane transport3.91E-02
207GO:0010431: seed maturation3.91E-02
208GO:0009664: plant-type cell wall organization3.96E-02
209GO:0071555: cell wall organization4.05E-02
210GO:0031348: negative regulation of defense response4.17E-02
211GO:0051603: proteolysis involved in cellular protein catabolic process4.40E-02
212GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.43E-02
213GO:0071215: cellular response to abscisic acid stimulus4.43E-02
214GO:0001944: vasculature development4.43E-02
215GO:0048443: stamen development4.70E-02
216GO:0042127: regulation of cell proliferation4.70E-02
217GO:0006284: base-excision repair4.70E-02
218GO:0010089: xylem development4.70E-02
219GO:0009826: unidimensional cell growth4.72E-02
220GO:0070417: cellular response to cold4.98E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0070009: serine-type aminopeptidase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0004519: endonuclease activity8.29E-05
7GO:0009672: auxin:proton symporter activity1.10E-04
8GO:0003723: RNA binding1.89E-04
9GO:0010329: auxin efflux transmembrane transporter activity2.55E-04
10GO:0004124: cysteine synthase activity5.39E-04
11GO:1905201: gibberellin transmembrane transporter activity6.10E-04
12GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.10E-04
13GO:0016274: protein-arginine N-methyltransferase activity6.10E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.10E-04
15GO:0004156: dihydropteroate synthase activity6.10E-04
16GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.10E-04
17GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.10E-04
18GO:0004071: aspartate-ammonia ligase activity6.10E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.10E-04
20GO:0004830: tryptophan-tRNA ligase activity6.10E-04
21GO:0052381: tRNA dimethylallyltransferase activity6.10E-04
22GO:0010347: L-galactose-1-phosphate phosphatase activity6.10E-04
23GO:0004016: adenylate cyclase activity6.10E-04
24GO:0052832: inositol monophosphate 3-phosphatase activity1.31E-03
25GO:0008805: carbon-monoxide oxygenase activity1.31E-03
26GO:0008934: inositol monophosphate 1-phosphatase activity1.31E-03
27GO:0052833: inositol monophosphate 4-phosphatase activity1.31E-03
28GO:0015929: hexosaminidase activity1.31E-03
29GO:0004563: beta-N-acetylhexosaminidase activity1.31E-03
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.31E-03
31GO:0009884: cytokinin receptor activity1.31E-03
32GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.31E-03
33GO:0017118: lipoyltransferase activity1.31E-03
34GO:0016415: octanoyltransferase activity1.31E-03
35GO:0016762: xyloglucan:xyloglucosyl transferase activity1.48E-03
36GO:0017150: tRNA dihydrouridine synthase activity2.16E-03
37GO:0045548: phenylalanine ammonia-lyase activity2.16E-03
38GO:0042781: 3'-tRNA processing endoribonuclease activity2.16E-03
39GO:0016805: dipeptidase activity2.16E-03
40GO:0005034: osmosensor activity2.16E-03
41GO:0009982: pseudouridine synthase activity2.60E-03
42GO:0003725: double-stranded RNA binding2.60E-03
43GO:0016798: hydrolase activity, acting on glycosyl bonds2.93E-03
44GO:0001872: (1->3)-beta-D-glucan binding3.14E-03
45GO:0009041: uridylate kinase activity3.14E-03
46GO:0004674: protein serine/threonine kinase activity3.37E-03
47GO:0005253: anion channel activity4.23E-03
48GO:0043495: protein anchor4.23E-03
49GO:0046556: alpha-L-arabinofuranosidase activity4.23E-03
50GO:0016279: protein-lysine N-methyltransferase activity4.23E-03
51GO:0004845: uracil phosphoribosyltransferase activity4.23E-03
52GO:0010011: auxin binding4.23E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity4.23E-03
54GO:0019843: rRNA binding4.55E-03
55GO:0004372: glycine hydroxymethyltransferase activity5.44E-03
56GO:0004523: RNA-DNA hybrid ribonuclease activity5.44E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor5.44E-03
58GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.44E-03
59GO:0008725: DNA-3-methyladenine glycosylase activity5.44E-03
60GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding5.55E-03
61GO:0030570: pectate lyase activity5.94E-03
62GO:0003727: single-stranded RNA binding6.46E-03
63GO:0004605: phosphatidate cytidylyltransferase activity6.74E-03
64GO:1990714: hydroxyproline O-galactosyltransferase activity6.74E-03
65GO:0008519: ammonium transmembrane transporter activity6.74E-03
66GO:0005247: voltage-gated chloride channel activity6.74E-03
67GO:0008195: phosphatidate phosphatase activity8.15E-03
68GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.15E-03
69GO:0004849: uridine kinase activity8.15E-03
70GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity8.15E-03
71GO:0016832: aldehyde-lyase activity8.15E-03
72GO:0004656: procollagen-proline 4-dioxygenase activity8.15E-03
73GO:0019900: kinase binding8.15E-03
74GO:0001085: RNA polymerase II transcription factor binding8.19E-03
75GO:0004871: signal transducer activity8.58E-03
76GO:0019901: protein kinase binding9.46E-03
77GO:0003777: microtubule motor activity1.05E-02
78GO:0004518: nuclease activity1.08E-02
79GO:0000156: phosphorelay response regulator activity1.16E-02
80GO:0008237: metallopeptidase activity1.31E-02
81GO:0008889: glycerophosphodiester phosphodiesterase activity1.47E-02
82GO:0016788: hydrolase activity, acting on ester bonds1.49E-02
83GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.83E-02
84GO:0004673: protein histidine kinase activity1.85E-02
85GO:0005215: transporter activity2.02E-02
86GO:0008515: sucrose transmembrane transporter activity2.05E-02
87GO:0005089: Rho guanyl-nucleotide exchange factor activity2.05E-02
88GO:0008559: xenobiotic-transporting ATPase activity2.05E-02
89GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.23E-02
90GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.23E-02
91GO:0052689: carboxylic ester hydrolase activity2.32E-02
92GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.45E-02
93GO:0004022: alcohol dehydrogenase (NAD) activity2.48E-02
94GO:0031072: heat shock protein binding2.48E-02
95GO:0000155: phosphorelay sensor kinase activity2.48E-02
96GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.64E-02
97GO:0051119: sugar transmembrane transporter activity2.93E-02
98GO:0004185: serine-type carboxypeptidase activity3.16E-02
99GO:0031418: L-ascorbic acid binding3.41E-02
100GO:0004672: protein kinase activity3.60E-02
101GO:0043424: protein histidine kinase binding3.65E-02
102GO:0005345: purine nucleobase transmembrane transporter activity3.65E-02
103GO:0005515: protein binding3.78E-02
104GO:0035251: UDP-glucosyltransferase activity3.91E-02
105GO:0004176: ATP-dependent peptidase activity3.91E-02
106GO:0033612: receptor serine/threonine kinase binding3.91E-02
107GO:0008408: 3'-5' exonuclease activity3.91E-02
108GO:0005524: ATP binding4.48E-02
109GO:0018024: histone-lysine N-methyltransferase activity4.98E-02
110GO:0004812: aminoacyl-tRNA ligase activity4.98E-02
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Gene type



Gene DE type