Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G28070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042817: pyridoxal metabolic process0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:0018023: peptidyl-lysine trimethylation0.00E+00
4GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:0006429: leucyl-tRNA aminoacylation0.00E+00
8GO:1905421: regulation of plant organ morphogenesis0.00E+00
9GO:0030155: regulation of cell adhesion0.00E+00
10GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0046460: neutral lipid biosynthetic process0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0009658: chloroplast organization9.65E-06
17GO:0045038: protein import into chloroplast thylakoid membrane1.76E-04
18GO:0042793: transcription from plastid promoter2.51E-04
19GO:0042026: protein refolding3.37E-04
20GO:0006730: one-carbon metabolic process3.69E-04
21GO:0000012: single strand break repair4.45E-04
22GO:0043266: regulation of potassium ion transport4.45E-04
23GO:0019478: D-amino acid catabolic process4.45E-04
24GO:0042547: cell wall modification involved in multidimensional cell growth4.45E-04
25GO:0042371: vitamin K biosynthetic process4.45E-04
26GO:2000021: regulation of ion homeostasis4.45E-04
27GO:1902458: positive regulation of stomatal opening4.45E-04
28GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.45E-04
29GO:0006419: alanyl-tRNA aminoacylation4.45E-04
30GO:0000476: maturation of 4.5S rRNA4.45E-04
31GO:0000967: rRNA 5'-end processing4.45E-04
32GO:2000025: regulation of leaf formation4.45E-04
33GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.45E-04
34GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.45E-04
35GO:0070509: calcium ion import4.45E-04
36GO:0000105: histidine biosynthetic process5.41E-04
37GO:0009657: plastid organization6.60E-04
38GO:0032544: plastid translation6.60E-04
39GO:0009793: embryo development ending in seed dormancy8.74E-04
40GO:0018026: peptidyl-lysine monomethylation9.61E-04
41GO:0006423: cysteinyl-tRNA aminoacylation9.61E-04
42GO:0042325: regulation of phosphorylation9.61E-04
43GO:0009220: pyrimidine ribonucleotide biosynthetic process9.61E-04
44GO:0001682: tRNA 5'-leader removal9.61E-04
45GO:1903426: regulation of reactive oxygen species biosynthetic process9.61E-04
46GO:0034470: ncRNA processing9.61E-04
47GO:0010198: synergid death9.61E-04
48GO:0006739: NADP metabolic process9.61E-04
49GO:1900871: chloroplast mRNA modification9.61E-04
50GO:0006782: protoporphyrinogen IX biosynthetic process1.08E-03
51GO:0045036: protein targeting to chloroplast1.08E-03
52GO:0010027: thylakoid membrane organization1.30E-03
53GO:0045037: protein import into chloroplast stroma1.43E-03
54GO:0051604: protein maturation1.57E-03
55GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.57E-03
56GO:0015940: pantothenate biosynthetic process1.57E-03
57GO:0005977: glycogen metabolic process1.57E-03
58GO:0033591: response to L-ascorbic acid1.57E-03
59GO:0048281: inflorescence morphogenesis1.57E-03
60GO:0006954: inflammatory response1.57E-03
61GO:0015995: chlorophyll biosynthetic process1.60E-03
62GO:2000012: regulation of auxin polar transport1.62E-03
63GO:0010148: transpiration2.27E-03
64GO:0016556: mRNA modification2.27E-03
65GO:2001141: regulation of RNA biosynthetic process2.27E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.27E-03
67GO:0009102: biotin biosynthetic process2.27E-03
68GO:0051085: chaperone mediated protein folding requiring cofactor2.27E-03
69GO:0010306: rhamnogalacturonan II biosynthetic process2.27E-03
70GO:0008615: pyridoxine biosynthetic process2.27E-03
71GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.27E-03
72GO:0009790: embryo development2.77E-03
73GO:0006734: NADH metabolic process3.05E-03
74GO:0044205: 'de novo' UMP biosynthetic process3.05E-03
75GO:0010021: amylopectin biosynthetic process3.05E-03
76GO:0051781: positive regulation of cell division3.05E-03
77GO:0042274: ribosomal small subunit biogenesis3.05E-03
78GO:0022622: root system development3.05E-03
79GO:0040008: regulation of growth3.33E-03
80GO:0007005: mitochondrion organization3.37E-03
81GO:0032543: mitochondrial translation3.90E-03
82GO:0010236: plastoquinone biosynthetic process3.90E-03
83GO:0009107: lipoate biosynthetic process3.90E-03
84GO:0032973: amino acid export4.83E-03
85GO:0050665: hydrogen peroxide biosynthetic process4.83E-03
86GO:0016554: cytidine to uridine editing4.83E-03
87GO:0010190: cytochrome b6f complex assembly4.83E-03
88GO:0017148: negative regulation of translation5.83E-03
89GO:0009942: longitudinal axis specification5.83E-03
90GO:0034389: lipid particle organization5.83E-03
91GO:0030488: tRNA methylation5.83E-03
92GO:0009854: oxidative photosynthetic carbon pathway5.83E-03
93GO:0080086: stamen filament development5.83E-03
94GO:0009648: photoperiodism5.83E-03
95GO:0042372: phylloquinone biosynthetic process5.83E-03
96GO:0006458: 'de novo' protein folding5.83E-03
97GO:0010444: guard mother cell differentiation6.89E-03
98GO:0006400: tRNA modification6.89E-03
99GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.89E-03
100GO:0010103: stomatal complex morphogenesis6.89E-03
101GO:0032880: regulation of protein localization6.89E-03
102GO:0048528: post-embryonic root development6.89E-03
103GO:0009772: photosynthetic electron transport in photosystem II6.89E-03
104GO:0043090: amino acid import6.89E-03
105GO:0070370: cellular heat acclimation6.89E-03
106GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.89E-03
107GO:0010196: nonphotochemical quenching6.89E-03
108GO:0010252: auxin homeostasis7.59E-03
109GO:0046620: regulation of organ growth8.02E-03
110GO:0006353: DNA-templated transcription, termination8.02E-03
111GO:0070413: trehalose metabolism in response to stress8.02E-03
112GO:2000070: regulation of response to water deprivation8.02E-03
113GO:0031540: regulation of anthocyanin biosynthetic process8.02E-03
114GO:0006402: mRNA catabolic process8.02E-03
115GO:0009734: auxin-activated signaling pathway8.95E-03
116GO:0006526: arginine biosynthetic process9.21E-03
117GO:0010204: defense response signaling pathway, resistance gene-independent9.21E-03
118GO:0007389: pattern specification process9.21E-03
119GO:0071482: cellular response to light stimulus9.21E-03
120GO:0001558: regulation of cell growth9.21E-03
121GO:0009627: systemic acquired resistance1.01E-02
122GO:0019432: triglyceride biosynthetic process1.05E-02
123GO:0006783: heme biosynthetic process1.05E-02
124GO:0000373: Group II intron splicing1.05E-02
125GO:0015780: nucleotide-sugar transport1.05E-02
126GO:0080144: amino acid homeostasis1.05E-02
127GO:0006098: pentose-phosphate shunt1.05E-02
128GO:0043067: regulation of programmed cell death1.18E-02
129GO:0006779: porphyrin-containing compound biosynthetic process1.18E-02
130GO:1900865: chloroplast RNA modification1.18E-02
131GO:0006949: syncytium formation1.31E-02
132GO:0006259: DNA metabolic process1.31E-02
133GO:0006535: cysteine biosynthetic process from serine1.31E-02
134GO:0005975: carbohydrate metabolic process1.43E-02
135GO:1903507: negative regulation of nucleic acid-templated transcription1.46E-02
136GO:0006352: DNA-templated transcription, initiation1.46E-02
137GO:0006415: translational termination1.46E-02
138GO:0009684: indoleacetic acid biosynthetic process1.46E-02
139GO:0010015: root morphogenesis1.46E-02
140GO:0006265: DNA topological change1.46E-02
141GO:0009073: aromatic amino acid family biosynthetic process1.46E-02
142GO:0045087: innate immune response1.51E-02
143GO:0010229: inflorescence development1.75E-02
144GO:0050826: response to freezing1.75E-02
145GO:0006094: gluconeogenesis1.75E-02
146GO:0006302: double-strand break repair1.91E-02
147GO:0048467: gynoecium development1.91E-02
148GO:0010207: photosystem II assembly1.91E-02
149GO:0010114: response to red light1.95E-02
150GO:0009926: auxin polar transport1.95E-02
151GO:0009733: response to auxin2.05E-02
152GO:0071732: cellular response to nitric oxide2.07E-02
153GO:0090351: seedling development2.07E-02
154GO:0070588: calcium ion transmembrane transport2.07E-02
155GO:0006457: protein folding2.08E-02
156GO:0009965: leaf morphogenesis2.19E-02
157GO:0042023: DNA endoreduplication2.24E-02
158GO:0006071: glycerol metabolic process2.24E-02
159GO:0000162: tryptophan biosynthetic process2.24E-02
160GO:0030150: protein import into mitochondrial matrix2.41E-02
161GO:0007010: cytoskeleton organization2.41E-02
162GO:0005992: trehalose biosynthetic process2.41E-02
163GO:0019344: cysteine biosynthetic process2.41E-02
164GO:0009116: nucleoside metabolic process2.41E-02
165GO:0009944: polarity specification of adaxial/abaxial axis2.41E-02
166GO:0009664: plant-type cell wall organization2.45E-02
167GO:0051302: regulation of cell division2.59E-02
168GO:0016575: histone deacetylation2.59E-02
169GO:0006418: tRNA aminoacylation for protein translation2.59E-02
170GO:0048511: rhythmic process2.77E-02
171GO:0061077: chaperone-mediated protein folding2.77E-02
172GO:0009409: response to cold2.91E-02
173GO:0031348: negative regulation of defense response2.95E-02
174GO:0009814: defense response, incompatible interaction2.95E-02
175GO:2000022: regulation of jasmonic acid mediated signaling pathway2.95E-02
176GO:0009686: gibberellin biosynthetic process3.14E-02
177GO:0071369: cellular response to ethylene stimulus3.14E-02
178GO:0001944: vasculature development3.14E-02
179GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.14E-02
180GO:0009306: protein secretion3.33E-02
181GO:0048366: leaf development3.35E-02
182GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.53E-02
183GO:0008284: positive regulation of cell proliferation3.53E-02
184GO:0008033: tRNA processing3.73E-02
185GO:0006606: protein import into nucleus3.73E-02
186GO:0048653: anther development3.73E-02
187GO:0006662: glycerol ether metabolic process3.94E-02
188GO:0010197: polar nucleus fusion3.94E-02
189GO:0048868: pollen tube development3.94E-02
190GO:0010268: brassinosteroid homeostasis3.94E-02
191GO:0009958: positive gravitropism3.94E-02
192GO:0042752: regulation of circadian rhythm4.14E-02
193GO:0007059: chromosome segregation4.14E-02
194GO:0015979: photosynthesis4.20E-02
195GO:0019252: starch biosynthetic process4.36E-02
196GO:0002229: defense response to oomycetes4.57E-02
197GO:0016132: brassinosteroid biosynthetic process4.57E-02
198GO:0000302: response to reactive oxygen species4.57E-02
199GO:0009630: gravitropism4.79E-02
200GO:0010583: response to cyclopentenone4.79E-02
201GO:0016032: viral process4.79E-02
RankGO TermAdjusted P value
1GO:0043014: alpha-tubulin binding0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0042903: tubulin deacetylase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
7GO:0015267: channel activity0.00E+00
8GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
9GO:0004358: glutamate N-acetyltransferase activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0004076: biotin synthase activity0.00E+00
12GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
13GO:0043864: indoleacetamide hydrolase activity0.00E+00
14GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
15GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
16GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
17GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
18GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.79E-06
19GO:0016773: phosphotransferase activity, alcohol group as acceptor1.76E-04
20GO:0004176: ATP-dependent peptidase activity3.27E-04
21GO:0004853: uroporphyrinogen decarboxylase activity4.45E-04
22GO:0052856: NADHX epimerase activity4.45E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.45E-04
24GO:0052857: NADPHX epimerase activity4.45E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.45E-04
26GO:0005227: calcium activated cation channel activity4.45E-04
27GO:0004733: pyridoxamine-phosphate oxidase activity4.45E-04
28GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.45E-04
29GO:0051777: ent-kaurenoate oxidase activity4.45E-04
30GO:0004856: xylulokinase activity4.45E-04
31GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.45E-04
32GO:0004813: alanine-tRNA ligase activity4.45E-04
33GO:0017118: lipoyltransferase activity9.61E-04
34GO:0009977: proton motive force dependent protein transmembrane transporter activity9.61E-04
35GO:0016415: octanoyltransferase activity9.61E-04
36GO:0004817: cysteine-tRNA ligase activity9.61E-04
37GO:0019156: isoamylase activity9.61E-04
38GO:0008237: metallopeptidase activity1.12E-03
39GO:0044183: protein binding involved in protein folding1.25E-03
40GO:0003723: RNA binding1.40E-03
41GO:0004557: alpha-galactosidase activity1.57E-03
42GO:0052692: raffinose alpha-galactosidase activity1.57E-03
43GO:0046524: sucrose-phosphate synthase activity1.57E-03
44GO:0002161: aminoacyl-tRNA editing activity1.57E-03
45GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.27E-03
46GO:0016656: monodehydroascorbate reductase (NADH) activity2.27E-03
47GO:0016851: magnesium chelatase activity2.27E-03
48GO:0043023: ribosomal large subunit binding2.27E-03
49GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.27E-03
50GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.27E-03
51GO:0019201: nucleotide kinase activity2.27E-03
52GO:0048487: beta-tubulin binding2.27E-03
53GO:0016149: translation release factor activity, codon specific2.27E-03
54GO:0019199: transmembrane receptor protein kinase activity3.05E-03
55GO:0042277: peptide binding3.05E-03
56GO:0008891: glycolate oxidase activity3.05E-03
57GO:0004659: prenyltransferase activity3.05E-03
58GO:0016279: protein-lysine N-methyltransferase activity3.05E-03
59GO:0001053: plastid sigma factor activity3.05E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity3.05E-03
61GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.05E-03
62GO:0016987: sigma factor activity3.05E-03
63GO:0030570: pectate lyase activity3.68E-03
64GO:0004040: amidase activity3.90E-03
65GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.90E-03
66GO:0042578: phosphoric ester hydrolase activity4.83E-03
67GO:0080030: methyl indole-3-acetate esterase activity4.83E-03
68GO:0004332: fructose-bisphosphate aldolase activity4.83E-03
69GO:0004526: ribonuclease P activity4.83E-03
70GO:0004556: alpha-amylase activity4.83E-03
71GO:0010181: FMN binding5.44E-03
72GO:0004144: diacylglycerol O-acyltransferase activity5.83E-03
73GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.83E-03
74GO:0004124: cysteine synthase activity5.83E-03
75GO:0008195: phosphatidate phosphatase activity5.83E-03
76GO:0004017: adenylate kinase activity5.83E-03
77GO:0005338: nucleotide-sugar transmembrane transporter activity6.89E-03
78GO:0016788: hydrolase activity, acting on ester bonds7.18E-03
79GO:0008312: 7S RNA binding8.02E-03
80GO:0016597: amino acid binding8.56E-03
81GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.21E-03
82GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.21E-03
83GO:0003747: translation release factor activity1.05E-02
84GO:0005525: GTP binding1.10E-02
85GO:0016829: lyase activity1.15E-02
86GO:0009672: auxin:proton symporter activity1.18E-02
87GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.19E-02
88GO:0004805: trehalose-phosphatase activity1.31E-02
89GO:0047372: acylglycerol lipase activity1.46E-02
90GO:0003746: translation elongation factor activity1.51E-02
91GO:0000049: tRNA binding1.60E-02
92GO:0010329: auxin efflux transmembrane transporter activity1.75E-02
93GO:0015266: protein channel activity1.75E-02
94GO:0004089: carbonate dehydratase activity1.75E-02
95GO:0005262: calcium channel activity1.75E-02
96GO:0019888: protein phosphatase regulator activity1.75E-02
97GO:0009982: pseudouridine synthase activity1.75E-02
98GO:0004565: beta-galactosidase activity1.75E-02
99GO:0008266: poly(U) RNA binding1.91E-02
100GO:0008083: growth factor activity1.91E-02
101GO:0004519: endonuclease activity1.98E-02
102GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.24E-02
103GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.24E-02
104GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.24E-02
105GO:0003714: transcription corepressor activity2.41E-02
106GO:0051536: iron-sulfur cluster binding2.41E-02
107GO:0004407: histone deacetylase activity2.41E-02
108GO:0005528: FK506 binding2.41E-02
109GO:0051087: chaperone binding2.59E-02
110GO:0003690: double-stranded DNA binding2.72E-02
111GO:0003964: RNA-directed DNA polymerase activity2.77E-02
112GO:0016887: ATPase activity3.33E-02
113GO:0047134: protein-disulfide reductase activity3.53E-02
114GO:0004812: aminoacyl-tRNA ligase activity3.53E-02
115GO:0051082: unfolded protein binding3.74E-02
116GO:0004527: exonuclease activity3.94E-02
117GO:0008536: Ran GTPase binding3.94E-02
118GO:0004791: thioredoxin-disulfide reductase activity4.14E-02
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Gene type



Gene DE type