Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G26490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090322: regulation of superoxide metabolic process0.00E+00
2GO:0000372: Group I intron splicing0.00E+00
3GO:1903224: regulation of endodermal cell differentiation0.00E+00
4GO:0043972: histone H3-K23 acetylation0.00E+00
5GO:0080127: fruit septum development0.00E+00
6GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:0045184: establishment of protein localization0.00E+00
9GO:0033206: meiotic cytokinesis0.00E+00
10GO:0090615: mitochondrial mRNA processing0.00E+00
11GO:0042794: rRNA transcription from plastid promoter0.00E+00
12GO:0044154: histone H3-K14 acetylation0.00E+00
13GO:0045014: negative regulation of transcription by glucose0.00E+00
14GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
15GO:1901698: response to nitrogen compound0.00E+00
16GO:0090627: plant epidermal cell differentiation0.00E+00
17GO:0009606: tropism0.00E+00
18GO:0042793: transcription from plastid promoter1.24E-07
19GO:0009734: auxin-activated signaling pathway1.12E-06
20GO:0010305: leaf vascular tissue pattern formation9.41E-06
21GO:0010569: regulation of double-strand break repair via homologous recombination1.62E-05
22GO:0046620: regulation of organ growth4.56E-05
23GO:0009658: chloroplast organization4.93E-05
24GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.06E-04
25GO:1900864: mitochondrial RNA modification1.93E-04
26GO:2000038: regulation of stomatal complex development1.93E-04
27GO:0080188: RNA-directed DNA methylation3.56E-04
28GO:0009416: response to light stimulus3.75E-04
29GO:0009913: epidermal cell differentiation4.09E-04
30GO:2000377: regulation of reactive oxygen species metabolic process4.74E-04
31GO:2000033: regulation of seed dormancy process5.43E-04
32GO:0043971: histone H3-K18 acetylation6.13E-04
33GO:0090558: plant epidermis development6.13E-04
34GO:0010063: positive regulation of trichoblast fate specification6.13E-04
35GO:1903866: palisade mesophyll development6.13E-04
36GO:0035987: endodermal cell differentiation6.13E-04
37GO:0006436: tryptophanyl-tRNA aminoacylation6.13E-04
38GO:0010342: endosperm cellularization6.13E-04
39GO:0034757: negative regulation of iron ion transport6.13E-04
40GO:0042659: regulation of cell fate specification6.13E-04
41GO:1905039: carboxylic acid transmembrane transport6.13E-04
42GO:1905200: gibberellic acid transmembrane transport6.13E-04
43GO:0080112: seed growth6.13E-04
44GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.95E-04
45GO:0006955: immune response6.95E-04
46GO:0042255: ribosome assembly8.64E-04
47GO:0006353: DNA-templated transcription, termination8.64E-04
48GO:0009938: negative regulation of gibberellic acid mediated signaling pathway8.64E-04
49GO:0007389: pattern specification process1.05E-03
50GO:0009733: response to auxin1.20E-03
51GO:0048507: meristem development1.26E-03
52GO:0000373: Group II intron splicing1.26E-03
53GO:0070981: L-asparagine biosynthetic process1.32E-03
54GO:0010271: regulation of chlorophyll catabolic process1.32E-03
55GO:0010434: bract formation1.32E-03
56GO:0018026: peptidyl-lysine monomethylation1.32E-03
57GO:0009662: etioplast organization1.32E-03
58GO:1900033: negative regulation of trichome patterning1.32E-03
59GO:0048439: flower morphogenesis1.32E-03
60GO:1904143: positive regulation of carotenoid biosynthetic process1.32E-03
61GO:0080009: mRNA methylation1.32E-03
62GO:0018022: peptidyl-lysine methylation1.32E-03
63GO:0006529: asparagine biosynthetic process1.32E-03
64GO:2000123: positive regulation of stomatal complex development1.32E-03
65GO:0010254: nectary development1.32E-03
66GO:1902326: positive regulation of chlorophyll biosynthetic process1.32E-03
67GO:0006355: regulation of transcription, DNA-templated1.40E-03
68GO:1900865: chloroplast RNA modification1.48E-03
69GO:0048829: root cap development1.73E-03
70GO:0010252: auxin homeostasis1.91E-03
71GO:0009451: RNA modification1.92E-03
72GO:0010589: leaf proximal/distal pattern formation2.17E-03
73GO:0001578: microtubule bundle formation2.17E-03
74GO:0071705: nitrogen compound transport2.17E-03
75GO:0030029: actin filament-based process2.17E-03
76GO:0009954: proximal/distal pattern formation2.17E-03
77GO:0090708: specification of plant organ axis polarity2.17E-03
78GO:0080117: secondary growth2.17E-03
79GO:0090391: granum assembly2.17E-03
80GO:0010582: floral meristem determinacy2.30E-03
81GO:0010029: regulation of seed germination2.58E-03
82GO:0010102: lateral root morphogenesis2.62E-03
83GO:0010588: cotyledon vascular tissue pattern formation2.62E-03
84GO:0046739: transport of virus in multicellular host3.15E-03
85GO:0006168: adenine salvage3.15E-03
86GO:1902290: positive regulation of defense response to oomycetes3.15E-03
87GO:0010371: regulation of gibberellin biosynthetic process3.15E-03
88GO:1902476: chloride transmembrane transport3.15E-03
89GO:0006166: purine ribonucleoside salvage3.15E-03
90GO:0010071: root meristem specification3.15E-03
91GO:0010239: chloroplast mRNA processing3.15E-03
92GO:0009800: cinnamic acid biosynthetic process3.15E-03
93GO:0007276: gamete generation3.15E-03
94GO:0043481: anthocyanin accumulation in tissues in response to UV light3.15E-03
95GO:0048481: plant ovule development3.38E-03
96GO:0048364: root development3.83E-03
97GO:0006351: transcription, DNA-templated4.08E-03
98GO:0009863: salicylic acid mediated signaling pathway4.12E-03
99GO:0010187: negative regulation of seed germination4.12E-03
100GO:0006808: regulation of nitrogen utilization4.25E-03
101GO:0006479: protein methylation4.25E-03
102GO:0048629: trichome patterning4.25E-03
103GO:0051322: anaphase4.25E-03
104GO:0071249: cellular response to nitrate4.25E-03
105GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.25E-03
106GO:0030104: water homeostasis4.25E-03
107GO:0000914: phragmoplast assembly4.25E-03
108GO:0006221: pyrimidine nucleotide biosynthetic process4.25E-03
109GO:0003333: amino acid transmembrane transport5.00E-03
110GO:0016998: cell wall macromolecule catabolic process5.00E-03
111GO:0030001: metal ion transport5.41E-03
112GO:0006544: glycine metabolic process5.46E-03
113GO:0048497: maintenance of floral organ identity5.46E-03
114GO:0044209: AMP salvage5.46E-03
115GO:0032876: negative regulation of DNA endoreduplication5.46E-03
116GO:0030308: negative regulation of cell growth5.46E-03
117GO:0080110: sporopollenin biosynthetic process5.46E-03
118GO:0010375: stomatal complex patterning5.46E-03
119GO:0009616: virus induced gene silencing5.46E-03
120GO:0009790: embryo development5.83E-03
121GO:0009926: auxin polar transport6.34E-03
122GO:0042127: regulation of cell proliferation6.51E-03
123GO:0003006: developmental process involved in reproduction6.78E-03
124GO:0010315: auxin efflux6.78E-03
125GO:0006559: L-phenylalanine catabolic process6.78E-03
126GO:0009643: photosynthetic acclimation6.78E-03
127GO:0035435: phosphate ion transmembrane transport6.78E-03
128GO:0006563: L-serine metabolic process6.78E-03
129GO:0010304: PSII associated light-harvesting complex II catabolic process6.78E-03
130GO:0009959: negative gravitropism6.78E-03
131GO:1902456: regulation of stomatal opening6.78E-03
132GO:0016554: cytidine to uridine editing6.78E-03
133GO:0048831: regulation of shoot system development6.78E-03
134GO:0042176: regulation of protein catabolic process6.78E-03
135GO:0040008: regulation of growth7.01E-03
136GO:0010087: phloem or xylem histogenesis7.65E-03
137GO:0006468: protein phosphorylation7.77E-03
138GO:0048509: regulation of meristem development8.20E-03
139GO:1901259: chloroplast rRNA processing8.20E-03
140GO:2000037: regulation of stomatal complex patterning8.20E-03
141GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.20E-03
142GO:0010310: regulation of hydrogen peroxide metabolic process8.20E-03
143GO:2000067: regulation of root morphogenesis8.20E-03
144GO:0009955: adaxial/abaxial pattern specification8.20E-03
145GO:0071470: cellular response to osmotic stress8.20E-03
146GO:0000911: cytokinesis by cell plate formation8.20E-03
147GO:0010067: procambium histogenesis8.20E-03
148GO:0042538: hyperosmotic salinity response8.49E-03
149GO:0009793: embryo development ending in seed dormancy8.67E-03
150GO:0009646: response to absence of light8.88E-03
151GO:0048825: cotyledon development9.53E-03
152GO:0035196: production of miRNAs involved in gene silencing by miRNA9.71E-03
153GO:0010103: stomatal complex morphogenesis9.71E-03
154GO:0006821: chloride transport9.71E-03
155GO:0048437: floral organ development9.71E-03
156GO:0080156: mitochondrial mRNA modification1.02E-02
157GO:0032502: developmental process1.09E-02
158GO:0009642: response to light intensity1.13E-02
159GO:0030162: regulation of proteolysis1.13E-02
160GO:0048766: root hair initiation1.13E-02
161GO:0010492: maintenance of shoot apical meristem identity1.13E-02
162GO:0055075: potassium ion homeostasis1.13E-02
163GO:0052543: callose deposition in cell wall1.13E-02
164GO:0001522: pseudouridine synthesis1.13E-02
165GO:0010090: trichome morphogenesis1.17E-02
166GO:0048367: shoot system development1.20E-02
167GO:0001510: RNA methylation1.30E-02
168GO:0010233: phloem transport1.30E-02
169GO:0010497: plasmodesmata-mediated intercellular transport1.30E-02
170GO:0032544: plastid translation1.30E-02
171GO:0044030: regulation of DNA methylation1.30E-02
172GO:0010093: specification of floral organ identity1.30E-02
173GO:0019430: removal of superoxide radicals1.30E-02
174GO:0009880: embryonic pattern specification1.30E-02
175GO:0009827: plant-type cell wall modification1.30E-02
176GO:0007186: G-protein coupled receptor signaling pathway1.30E-02
177GO:0009740: gibberellic acid mediated signaling pathway1.35E-02
178GO:0000910: cytokinesis1.40E-02
179GO:0048589: developmental growth1.48E-02
180GO:0000902: cell morphogenesis1.48E-02
181GO:0009245: lipid A biosynthetic process1.48E-02
182GO:0010027: thylakoid membrane organization1.49E-02
183GO:0031425: chloroplast RNA processing1.67E-02
184GO:0016573: histone acetylation1.67E-02
185GO:1900426: positive regulation of defense response to bacterium1.67E-02
186GO:0035999: tetrahydrofolate interconversion1.67E-02
187GO:0042761: very long-chain fatty acid biosynthetic process1.67E-02
188GO:2000280: regulation of root development1.67E-02
189GO:0006349: regulation of gene expression by genetic imprinting1.67E-02
190GO:0016571: histone methylation1.67E-02
191GO:0006535: cysteine biosynthetic process from serine1.86E-02
192GO:0030422: production of siRNA involved in RNA interference1.86E-02
193GO:0031627: telomeric loop formation1.86E-02
194GO:0010048: vernalization response1.86E-02
195GO:0000160: phosphorelay signal transduction system2.04E-02
196GO:0015770: sucrose transport2.06E-02
197GO:0009750: response to fructose2.06E-02
198GO:0048765: root hair cell differentiation2.06E-02
199GO:0046856: phosphatidylinositol dephosphorylation2.06E-02
200GO:0010015: root morphogenesis2.06E-02
201GO:0009845: seed germination2.15E-02
202GO:0010218: response to far red light2.15E-02
203GO:0009910: negative regulation of flower development2.25E-02
204GO:0008361: regulation of cell size2.27E-02
205GO:0015706: nitrate transport2.27E-02
206GO:0010152: pollen maturation2.27E-02
207GO:0006865: amino acid transport2.36E-02
208GO:0009867: jasmonic acid mediated signaling pathway2.47E-02
209GO:0009691: cytokinin biosynthetic process2.49E-02
210GO:0009767: photosynthetic electron transport chain2.49E-02
211GO:0045892: negative regulation of transcription, DNA-templated2.70E-02
212GO:0010020: chloroplast fission2.71E-02
213GO:0010223: secondary shoot formation2.71E-02
214GO:0006270: DNA replication initiation2.71E-02
215GO:0009887: animal organ morphogenesis2.71E-02
216GO:0009266: response to temperature stimulus2.71E-02
217GO:0048467: gynoecium development2.71E-02
218GO:0006541: glutamine metabolic process2.71E-02
219GO:0010167: response to nitrate2.94E-02
220GO:0009901: anther dehiscence2.94E-02
221GO:0006071: glycerol metabolic process3.18E-02
222GO:0006833: water transport3.18E-02
223GO:0008283: cell proliferation3.18E-02
224GO:0009739: response to gibberellin3.35E-02
225GO:0006338: chromatin remodeling3.42E-02
226GO:0019344: cysteine biosynthetic process3.42E-02
227GO:0009944: polarity specification of adaxial/abaxial axis3.42E-02
228GO:0080147: root hair cell development3.42E-02
229GO:0008380: RNA splicing3.63E-02
230GO:0006825: copper ion transport3.67E-02
231GO:0051302: regulation of cell division3.67E-02
232GO:0006418: tRNA aminoacylation for protein translation3.67E-02
233GO:0006874: cellular calcium ion homeostasis3.67E-02
234GO:0010431: seed maturation3.93E-02
235GO:0031348: negative regulation of defense response4.19E-02
236GO:0009736: cytokinin-activated signaling pathway4.28E-02
237GO:0071215: cellular response to abscisic acid stimulus4.46E-02
238GO:0001944: vasculature development4.46E-02
239GO:0010227: floral organ abscission4.46E-02
240GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.46E-02
241GO:0010082: regulation of root meristem growth4.46E-02
242GO:0006284: base-excision repair4.73E-02
243GO:0009909: regulation of flower development4.73E-02
244GO:0010089: xylem development4.73E-02
245GO:0010584: pollen exine formation4.73E-02
246GO:0048443: stamen development4.73E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0042834: peptidoglycan binding0.00E+00
4GO:0003723: RNA binding7.78E-05
5GO:0016279: protein-lysine N-methyltransferase activity1.93E-04
6GO:0004071: aspartate-ammonia ligase activity6.13E-04
7GO:0004830: tryptophan-tRNA ligase activity6.13E-04
8GO:0052381: tRNA dimethylallyltransferase activity6.13E-04
9GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor6.13E-04
10GO:0004016: adenylate cyclase activity6.13E-04
11GO:1905201: gibberellin transmembrane transporter activity6.13E-04
12GO:0016274: protein-arginine N-methyltransferase activity6.13E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.13E-04
14GO:0003697: single-stranded DNA binding8.15E-04
15GO:0003727: single-stranded RNA binding8.52E-04
16GO:0004519: endonuclease activity1.25E-03
17GO:0000989: transcription factor activity, transcription factor binding1.26E-03
18GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.32E-03
19GO:0009884: cytokinin receptor activity1.32E-03
20GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.32E-03
21GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.32E-03
22GO:0008805: carbon-monoxide oxygenase activity1.32E-03
23GO:0009672: auxin:proton symporter activity1.48E-03
24GO:0070181: small ribosomal subunit rRNA binding2.17E-03
25GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.17E-03
26GO:0016805: dipeptidase activity2.17E-03
27GO:0005034: osmosensor activity2.17E-03
28GO:0004180: carboxypeptidase activity2.17E-03
29GO:0017150: tRNA dihydrouridine synthase activity2.17E-03
30GO:0045548: phenylalanine ammonia-lyase activity2.17E-03
31GO:0010329: auxin efflux transmembrane transporter activity2.62E-03
32GO:0009982: pseudouridine synthase activity2.62E-03
33GO:0003725: double-stranded RNA binding2.62E-03
34GO:0009041: uridylate kinase activity3.15E-03
35GO:0001872: (1->3)-beta-D-glucan binding3.15E-03
36GO:0005354: galactose transmembrane transporter activity3.15E-03
37GO:0003999: adenine phosphoribosyltransferase activity3.15E-03
38GO:0005253: anion channel activity4.25E-03
39GO:0004930: G-protein coupled receptor activity4.25E-03
40GO:0010011: auxin binding4.25E-03
41GO:0010328: auxin influx transmembrane transporter activity4.25E-03
42GO:0010385: double-stranded methylated DNA binding4.25E-03
43GO:0019843: rRNA binding4.60E-03
44GO:0005515: protein binding5.05E-03
45GO:0008725: DNA-3-methyladenine glycosylase activity5.46E-03
46GO:0004372: glycine hydroxymethyltransferase activity5.46E-03
47GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding5.61E-03
48GO:0003700: transcription factor activity, sequence-specific DNA binding5.86E-03
49GO:0030570: pectate lyase activity5.99E-03
50GO:0004784: superoxide dismutase activity6.78E-03
51GO:0005247: voltage-gated chloride channel activity6.78E-03
52GO:0003688: DNA replication origin binding6.78E-03
53GO:0031177: phosphopantetheine binding6.78E-03
54GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.78E-03
55GO:0004674: protein serine/threonine kinase activity7.34E-03
56GO:0005215: transporter activity8.13E-03
57GO:0003677: DNA binding8.13E-03
58GO:0000035: acyl binding8.20E-03
59GO:0019900: kinase binding8.20E-03
60GO:0004124: cysteine synthase activity8.20E-03
61GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.20E-03
62GO:0016832: aldehyde-lyase activity8.20E-03
63GO:0001085: RNA polymerase II transcription factor binding8.25E-03
64GO:0019901: protein kinase binding9.53E-03
65GO:0003690: double-stranded DNA binding9.72E-03
66GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.13E-02
67GO:0008173: RNA methyltransferase activity1.30E-02
68GO:0005200: structural constituent of cytoskeleton1.32E-02
69GO:0008889: glycerophosphodiester phosphodiesterase activity1.48E-02
70GO:0043565: sequence-specific DNA binding1.69E-02
71GO:0004673: protein histidine kinase activity1.86E-02
72GO:0008171: O-methyltransferase activity1.86E-02
73GO:0008515: sucrose transmembrane transporter activity2.06E-02
74GO:0003691: double-stranded telomeric DNA binding2.06E-02
75GO:0004222: metalloendopeptidase activity2.15E-02
76GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.25E-02
77GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.27E-02
78GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.47E-02
79GO:0004022: alcohol dehydrogenase (NAD) activity2.49E-02
80GO:0031072: heat shock protein binding2.49E-02
81GO:0000155: phosphorelay sensor kinase activity2.49E-02
82GO:0015114: phosphate ion transmembrane transporter activity2.49E-02
83GO:0042803: protein homodimerization activity2.83E-02
84GO:0004970: ionotropic glutamate receptor activity2.94E-02
85GO:0051119: sugar transmembrane transporter activity2.94E-02
86GO:0005217: intracellular ligand-gated ion channel activity2.94E-02
87GO:0008017: microtubule binding3.09E-02
88GO:0043621: protein self-association3.44E-02
89GO:0015293: symporter activity3.58E-02
90GO:0043424: protein histidine kinase binding3.67E-02
91GO:0005345: purine nucleobase transmembrane transporter activity3.67E-02
92GO:0015079: potassium ion transmembrane transporter activity3.67E-02
93GO:0004176: ATP-dependent peptidase activity3.93E-02
94GO:0015171: amino acid transmembrane transporter activity4.73E-02
95GO:0003777: microtubule motor activity4.73E-02
96GO:0008168: methyltransferase activity4.77E-02
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Gene type



Gene DE type