GO Enrichment Analysis of Co-expressed Genes with
AT3G25920
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006982: response to lipid hydroperoxide | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0010335: response to non-ionic osmotic stress | 0.00E+00 |
| 4 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 5 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 6 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 7 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 2.43E-07 |
| 9 | GO:0009658: chloroplast organization | 1.56E-05 |
| 10 | GO:0006094: gluconeogenesis | 1.69E-05 |
| 11 | GO:0015995: chlorophyll biosynthetic process | 1.90E-05 |
| 12 | GO:0010207: photosystem II assembly | 2.08E-05 |
| 13 | GO:0018298: protein-chromophore linkage | 2.34E-05 |
| 14 | GO:0015994: chlorophyll metabolic process | 2.45E-05 |
| 15 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.22E-05 |
| 16 | GO:0009645: response to low light intensity stimulus | 1.09E-04 |
| 17 | GO:0009704: de-etiolation | 1.40E-04 |
| 18 | GO:0016559: peroxisome fission | 1.40E-04 |
| 19 | GO:0032544: plastid translation | 1.75E-04 |
| 20 | GO:0043953: protein transport by the Tat complex | 1.80E-04 |
| 21 | GO:0010426: DNA methylation on cytosine within a CHH sequence | 1.80E-04 |
| 22 | GO:0071277: cellular response to calcium ion | 1.80E-04 |
| 23 | GO:0043489: RNA stabilization | 1.80E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.80E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 1.80E-04 |
| 26 | GO:0065002: intracellular protein transmembrane transport | 1.80E-04 |
| 27 | GO:0071461: cellular response to redox state | 1.80E-04 |
| 28 | GO:1902458: positive regulation of stomatal opening | 1.80E-04 |
| 29 | GO:0034337: RNA folding | 1.80E-04 |
| 30 | GO:0010027: thylakoid membrane organization | 2.41E-04 |
| 31 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.05E-04 |
| 32 | GO:0042819: vitamin B6 biosynthetic process | 4.05E-04 |
| 33 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.05E-04 |
| 34 | GO:0080005: photosystem stoichiometry adjustment | 4.05E-04 |
| 35 | GO:0006729: tetrahydrobiopterin biosynthetic process | 4.05E-04 |
| 36 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.05E-04 |
| 37 | GO:0015790: UDP-xylose transport | 4.05E-04 |
| 38 | GO:0006633: fatty acid biosynthetic process | 4.12E-04 |
| 39 | GO:0010143: cutin biosynthetic process | 5.13E-04 |
| 40 | GO:0006000: fructose metabolic process | 6.61E-04 |
| 41 | GO:0044375: regulation of peroxisome size | 6.61E-04 |
| 42 | GO:0006364: rRNA processing | 9.37E-04 |
| 43 | GO:0009152: purine ribonucleotide biosynthetic process | 9.45E-04 |
| 44 | GO:0046653: tetrahydrofolate metabolic process | 9.45E-04 |
| 45 | GO:0042823: pyridoxal phosphate biosynthetic process | 9.45E-04 |
| 46 | GO:0008615: pyridoxine biosynthetic process | 9.45E-04 |
| 47 | GO:0010731: protein glutathionylation | 9.45E-04 |
| 48 | GO:2001141: regulation of RNA biosynthetic process | 9.45E-04 |
| 49 | GO:0006020: inositol metabolic process | 9.45E-04 |
| 50 | GO:0045727: positive regulation of translation | 1.25E-03 |
| 51 | GO:0010600: regulation of auxin biosynthetic process | 1.25E-03 |
| 52 | GO:0006021: inositol biosynthetic process | 1.25E-03 |
| 53 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.59E-03 |
| 54 | GO:0009107: lipoate biosynthetic process | 1.59E-03 |
| 55 | GO:0046855: inositol phosphate dephosphorylation | 1.96E-03 |
| 56 | GO:0042549: photosystem II stabilization | 1.96E-03 |
| 57 | GO:0032259: methylation | 2.16E-03 |
| 58 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 2.35E-03 |
| 59 | GO:1901259: chloroplast rRNA processing | 2.35E-03 |
| 60 | GO:0000054: ribosomal subunit export from nucleus | 2.35E-03 |
| 61 | GO:0045926: negative regulation of growth | 2.35E-03 |
| 62 | GO:0010189: vitamin E biosynthetic process | 2.35E-03 |
| 63 | GO:0009772: photosynthetic electron transport in photosystem II | 2.77E-03 |
| 64 | GO:1900057: positive regulation of leaf senescence | 2.77E-03 |
| 65 | GO:0010161: red light signaling pathway | 2.77E-03 |
| 66 | GO:0055114: oxidation-reduction process | 3.04E-03 |
| 67 | GO:0048564: photosystem I assembly | 3.21E-03 |
| 68 | GO:0010928: regulation of auxin mediated signaling pathway | 3.21E-03 |
| 69 | GO:2000070: regulation of response to water deprivation | 3.21E-03 |
| 70 | GO:0006002: fructose 6-phosphate metabolic process | 3.67E-03 |
| 71 | GO:0071482: cellular response to light stimulus | 3.67E-03 |
| 72 | GO:0015996: chlorophyll catabolic process | 3.67E-03 |
| 73 | GO:0007186: G-protein coupled receptor signaling pathway | 3.67E-03 |
| 74 | GO:0009657: plastid organization | 3.67E-03 |
| 75 | GO:0006098: pentose-phosphate shunt | 4.15E-03 |
| 76 | GO:0090333: regulation of stomatal closure | 4.15E-03 |
| 77 | GO:0006754: ATP biosynthetic process | 4.15E-03 |
| 78 | GO:0006631: fatty acid metabolic process | 4.72E-03 |
| 79 | GO:0010114: response to red light | 5.12E-03 |
| 80 | GO:0042254: ribosome biogenesis | 5.17E-03 |
| 81 | GO:0006535: cysteine biosynthetic process from serine | 5.18E-03 |
| 82 | GO:0043069: negative regulation of programmed cell death | 5.18E-03 |
| 83 | GO:0009644: response to high light intensity | 5.54E-03 |
| 84 | GO:0009773: photosynthetic electron transport in photosystem I | 5.72E-03 |
| 85 | GO:0006415: translational termination | 5.72E-03 |
| 86 | GO:0006352: DNA-templated transcription, initiation | 5.72E-03 |
| 87 | GO:0000272: polysaccharide catabolic process | 5.72E-03 |
| 88 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.72E-03 |
| 89 | GO:0009636: response to toxic substance | 5.75E-03 |
| 90 | GO:0006790: sulfur compound metabolic process | 6.28E-03 |
| 91 | GO:0045037: protein import into chloroplast stroma | 6.28E-03 |
| 92 | GO:0005986: sucrose biosynthetic process | 6.86E-03 |
| 93 | GO:0018107: peptidyl-threonine phosphorylation | 6.86E-03 |
| 94 | GO:0009725: response to hormone | 6.86E-03 |
| 95 | GO:0034605: cellular response to heat | 7.46E-03 |
| 96 | GO:0010020: chloroplast fission | 7.46E-03 |
| 97 | GO:0019253: reductive pentose-phosphate cycle | 7.46E-03 |
| 98 | GO:0009266: response to temperature stimulus | 7.46E-03 |
| 99 | GO:0007031: peroxisome organization | 8.08E-03 |
| 100 | GO:0046854: phosphatidylinositol phosphorylation | 8.08E-03 |
| 101 | GO:0006096: glycolytic process | 8.16E-03 |
| 102 | GO:0010025: wax biosynthetic process | 8.71E-03 |
| 103 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.71E-03 |
| 104 | GO:0005975: carbohydrate metabolic process | 9.22E-03 |
| 105 | GO:0019344: cysteine biosynthetic process | 9.37E-03 |
| 106 | GO:0006396: RNA processing | 1.01E-02 |
| 107 | GO:0061077: chaperone-mediated protein folding | 1.07E-02 |
| 108 | GO:0006306: DNA methylation | 1.07E-02 |
| 109 | GO:0010017: red or far-red light signaling pathway | 1.14E-02 |
| 110 | GO:0019722: calcium-mediated signaling | 1.29E-02 |
| 111 | GO:0009561: megagametogenesis | 1.29E-02 |
| 112 | GO:0009306: protein secretion | 1.29E-02 |
| 113 | GO:0042631: cellular response to water deprivation | 1.44E-02 |
| 114 | GO:0006520: cellular amino acid metabolic process | 1.52E-02 |
| 115 | GO:0010182: sugar mediated signaling pathway | 1.52E-02 |
| 116 | GO:0009741: response to brassinosteroid | 1.52E-02 |
| 117 | GO:0009646: response to absence of light | 1.60E-02 |
| 118 | GO:0015986: ATP synthesis coupled proton transport | 1.60E-02 |
| 119 | GO:0009791: post-embryonic development | 1.68E-02 |
| 120 | GO:0019252: starch biosynthetic process | 1.68E-02 |
| 121 | GO:0007623: circadian rhythm | 1.71E-02 |
| 122 | GO:0009735: response to cytokinin | 2.01E-02 |
| 123 | GO:0009567: double fertilization forming a zygote and endosperm | 2.03E-02 |
| 124 | GO:0007267: cell-cell signaling | 2.11E-02 |
| 125 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 2.39E-02 |
| 126 | GO:0042128: nitrate assimilation | 2.48E-02 |
| 127 | GO:0009409: response to cold | 2.51E-02 |
| 128 | GO:0009817: defense response to fungus, incompatible interaction | 2.77E-02 |
| 129 | GO:0006810: transport | 2.83E-02 |
| 130 | GO:0010311: lateral root formation | 2.87E-02 |
| 131 | GO:0009407: toxin catabolic process | 2.97E-02 |
| 132 | GO:0010218: response to far red light | 2.97E-02 |
| 133 | GO:0009631: cold acclimation | 3.08E-02 |
| 134 | GO:0009853: photorespiration | 3.28E-02 |
| 135 | GO:0045087: innate immune response | 3.28E-02 |
| 136 | GO:0016051: carbohydrate biosynthetic process | 3.28E-02 |
| 137 | GO:0009637: response to blue light | 3.28E-02 |
| 138 | GO:0044550: secondary metabolite biosynthetic process | 3.56E-02 |
| 139 | GO:0009744: response to sucrose | 3.93E-02 |
| 140 | GO:0008643: carbohydrate transport | 4.16E-02 |
| 141 | GO:0042538: hyperosmotic salinity response | 4.62E-02 |
| 142 | GO:0016042: lipid catabolic process | 4.68E-02 |
| 143 | GO:0009585: red, far-red light phototransduction | 4.86E-02 |
| 144 | GO:0010224: response to UV-B | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 3 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 4 | GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0016168: chlorophyll binding | 1.52E-05 |
| 7 | GO:0019843: rRNA binding | 2.81E-05 |
| 8 | GO:0031409: pigment binding | 3.03E-05 |
| 9 | GO:0004332: fructose-bisphosphate aldolase activity | 5.89E-05 |
| 10 | GO:0016491: oxidoreductase activity | 1.36E-04 |
| 11 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.80E-04 |
| 12 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.80E-04 |
| 13 | GO:0031957: very long-chain fatty acid-CoA ligase activity | 1.80E-04 |
| 14 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.80E-04 |
| 15 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.05E-04 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.05E-04 |
| 17 | GO:0043024: ribosomal small subunit binding | 4.05E-04 |
| 18 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.05E-04 |
| 19 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.05E-04 |
| 20 | GO:0005464: UDP-xylose transmembrane transporter activity | 4.05E-04 |
| 21 | GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity | 4.05E-04 |
| 22 | GO:0018708: thiol S-methyltransferase activity | 4.05E-04 |
| 23 | GO:0050017: L-3-cyanoalanine synthase activity | 4.05E-04 |
| 24 | GO:0047746: chlorophyllase activity | 4.05E-04 |
| 25 | GO:0042389: omega-3 fatty acid desaturase activity | 4.05E-04 |
| 26 | GO:0010297: heteropolysaccharide binding | 4.05E-04 |
| 27 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.05E-04 |
| 28 | GO:0004565: beta-galactosidase activity | 4.55E-04 |
| 29 | GO:0031072: heat shock protein binding | 4.55E-04 |
| 30 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.61E-04 |
| 31 | GO:0050734: hydroxycinnamoyltransferase activity | 6.61E-04 |
| 32 | GO:0016992: lipoate synthase activity | 6.61E-04 |
| 33 | GO:0030267: glyoxylate reductase (NADP) activity | 6.61E-04 |
| 34 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.61E-04 |
| 35 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.61E-04 |
| 36 | GO:0042802: identical protein binding | 6.89E-04 |
| 37 | GO:0005528: FK506 binding | 7.06E-04 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.84E-04 |
| 39 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 9.45E-04 |
| 40 | GO:0016851: magnesium chelatase activity | 9.45E-04 |
| 41 | GO:0043023: ribosomal large subunit binding | 9.45E-04 |
| 42 | GO:0016987: sigma factor activity | 1.25E-03 |
| 43 | GO:0043495: protein anchor | 1.25E-03 |
| 44 | GO:0001053: plastid sigma factor activity | 1.25E-03 |
| 45 | GO:0042578: phosphoric ester hydrolase activity | 1.96E-03 |
| 46 | GO:0004124: cysteine synthase activity | 2.35E-03 |
| 47 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.35E-03 |
| 48 | GO:0102391: decanoate--CoA ligase activity | 2.35E-03 |
| 49 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 2.35E-03 |
| 50 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.35E-03 |
| 51 | GO:0019899: enzyme binding | 2.77E-03 |
| 52 | GO:0004467: long-chain fatty acid-CoA ligase activity | 2.77E-03 |
| 53 | GO:0008135: translation factor activity, RNA binding | 3.67E-03 |
| 54 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.67E-03 |
| 55 | GO:0003746: translation elongation factor activity | 3.98E-03 |
| 56 | GO:0071949: FAD binding | 4.15E-03 |
| 57 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 4.65E-03 |
| 58 | GO:0008168: methyltransferase activity | 4.81E-03 |
| 59 | GO:0004364: glutathione transferase activity | 4.92E-03 |
| 60 | GO:0016788: hydrolase activity, acting on ester bonds | 5.17E-03 |
| 61 | GO:0030234: enzyme regulator activity | 5.18E-03 |
| 62 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.54E-03 |
| 63 | GO:0008266: poly(U) RNA binding | 7.46E-03 |
| 64 | GO:0051082: unfolded protein binding | 9.83E-03 |
| 65 | GO:0022891: substrate-specific transmembrane transporter activity | 1.22E-02 |
| 66 | GO:0003727: single-stranded RNA binding | 1.29E-02 |
| 67 | GO:0030170: pyridoxal phosphate binding | 1.37E-02 |
| 68 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.52E-02 |
| 69 | GO:0005506: iron ion binding | 1.56E-02 |
| 70 | GO:0050662: coenzyme binding | 1.60E-02 |
| 71 | GO:0004872: receptor activity | 1.68E-02 |
| 72 | GO:0016887: ATPase activity | 1.90E-02 |
| 73 | GO:0016740: transferase activity | 2.88E-02 |
| 74 | GO:0003729: mRNA binding | 2.89E-02 |
| 75 | GO:0004222: metalloendopeptidase activity | 2.97E-02 |
| 76 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.60E-02 |
| 77 | GO:0052689: carboxylic ester hydrolase activity | 3.62E-02 |
| 78 | GO:0042803: protein homodimerization activity | 4.10E-02 |
| 79 | GO:0043621: protein self-association | 4.16E-02 |
| 80 | GO:0005525: GTP binding | 4.17E-02 |
| 81 | GO:0003735: structural constituent of ribosome | 4.40E-02 |
| 82 | GO:0003924: GTPase activity | 4.81E-02 |
| 83 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.86E-02 |
| 84 | GO:0016787: hydrolase activity | 4.89E-02 |
| 85 | GO:0003690: double-stranded DNA binding | 4.98E-02 |