Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G25610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072660: maintenance of protein location in plasma membrane0.00E+00
2GO:0071327: cellular response to trehalose stimulus0.00E+00
3GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
4GO:0070328: triglyceride homeostasis0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0061416: regulation of transcription from RNA polymerase II promoter in response to salt stress0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0055091: phospholipid homeostasis0.00E+00
9GO:0033587: shikimate biosynthetic process0.00E+00
10GO:0006468: protein phosphorylation2.72E-09
11GO:0031348: negative regulation of defense response5.70E-08
12GO:0060548: negative regulation of cell death1.94E-07
13GO:0046777: protein autophosphorylation6.17E-07
14GO:0007166: cell surface receptor signaling pathway1.11E-06
15GO:0019725: cellular homeostasis2.32E-06
16GO:0010200: response to chitin7.03E-06
17GO:0000187: activation of MAPK activity1.93E-05
18GO:0009626: plant-type hypersensitive response2.53E-05
19GO:0009266: response to temperature stimulus3.39E-05
20GO:0080142: regulation of salicylic acid biosynthetic process3.53E-05
21GO:0010225: response to UV-C5.65E-05
22GO:0009863: salicylic acid mediated signaling pathway5.75E-05
23GO:2000037: regulation of stomatal complex patterning1.15E-04
24GO:0009094: L-phenylalanine biosynthetic process1.15E-04
25GO:0042742: defense response to bacterium1.49E-04
26GO:0048482: plant ovule morphogenesis2.22E-04
27GO:0010365: positive regulation of ethylene biosynthetic process2.22E-04
28GO:0051938: L-glutamate import2.22E-04
29GO:0051245: negative regulation of cellular defense response2.22E-04
30GO:0010421: hydrogen peroxide-mediated programmed cell death2.22E-04
31GO:0006562: proline catabolic process2.22E-04
32GO:1901183: positive regulation of camalexin biosynthetic process2.22E-04
33GO:0009270: response to humidity2.22E-04
34GO:0050691: regulation of defense response to virus by host2.22E-04
35GO:2000031: regulation of salicylic acid mediated signaling pathway2.40E-04
36GO:0018105: peptidyl-serine phosphorylation3.40E-04
37GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.95E-04
38GO:0010133: proline catabolic process to glutamate4.95E-04
39GO:0015802: basic amino acid transport4.95E-04
40GO:0010618: aerenchyma formation4.95E-04
41GO:0055088: lipid homeostasis4.95E-04
42GO:0002221: pattern recognition receptor signaling pathway4.95E-04
43GO:0043091: L-arginine import4.95E-04
44GO:0035556: intracellular signal transduction6.04E-04
45GO:0010229: inflorescence development6.09E-04
46GO:0007034: vacuolar transport6.86E-04
47GO:0009751: response to salicylic acid7.91E-04
48GO:0052546: cell wall pectin metabolic process8.05E-04
49GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process8.05E-04
50GO:0034051: negative regulation of plant-type hypersensitive response8.05E-04
51GO:1900140: regulation of seedling development8.05E-04
52GO:0045793: positive regulation of cell size8.05E-04
53GO:0072661: protein targeting to plasma membrane8.05E-04
54GO:0010186: positive regulation of cellular defense response8.05E-04
55GO:0006065: UDP-glucuronate biosynthetic process8.05E-04
56GO:0046621: negative regulation of organ growth8.05E-04
57GO:0048194: Golgi vesicle budding1.15E-03
58GO:0070301: cellular response to hydrogen peroxide1.15E-03
59GO:0072583: clathrin-dependent endocytosis1.15E-03
60GO:0010148: transpiration1.15E-03
61GO:0002679: respiratory burst involved in defense response1.15E-03
62GO:0006537: glutamate biosynthetic process1.15E-03
63GO:0006612: protein targeting to membrane1.15E-03
64GO:0015696: ammonium transport1.15E-03
65GO:0071323: cellular response to chitin1.15E-03
66GO:0051289: protein homotetramerization1.15E-03
67GO:0055089: fatty acid homeostasis1.15E-03
68GO:0009814: defense response, incompatible interaction1.24E-03
69GO:0010227: floral organ abscission1.35E-03
70GO:0006952: defense response1.43E-03
71GO:0046345: abscisic acid catabolic process1.53E-03
72GO:0009652: thigmotropism1.53E-03
73GO:0045088: regulation of innate immune response1.53E-03
74GO:1902584: positive regulation of response to water deprivation1.53E-03
75GO:0072488: ammonium transmembrane transport1.53E-03
76GO:0010363: regulation of plant-type hypersensitive response1.53E-03
77GO:1901002: positive regulation of response to salt stress1.53E-03
78GO:2000038: regulation of stomatal complex development1.53E-03
79GO:0045927: positive regulation of growth1.95E-03
80GO:0034052: positive regulation of plant-type hypersensitive response1.95E-03
81GO:0009697: salicylic acid biosynthetic process1.95E-03
82GO:0005513: detection of calcium ion1.95E-03
83GO:0048317: seed morphogenesis2.40E-03
84GO:1900425: negative regulation of defense response to bacterium2.40E-03
85GO:0010942: positive regulation of cell death2.40E-03
86GO:0010310: regulation of hydrogen peroxide metabolic process2.89E-03
87GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.89E-03
88GO:0034389: lipid particle organization2.89E-03
89GO:0042372: phylloquinone biosynthetic process2.89E-03
90GO:0009612: response to mechanical stimulus2.89E-03
91GO:0010161: red light signaling pathway3.40E-03
92GO:0071446: cellular response to salicylic acid stimulus3.40E-03
93GO:0080186: developmental vegetative growth3.40E-03
94GO:0048573: photoperiodism, flowering3.84E-03
95GO:0035265: organ growth3.94E-03
96GO:0032875: regulation of DNA endoreduplication3.94E-03
97GO:0010099: regulation of photomorphogenesis4.51E-03
98GO:0030968: endoplasmic reticulum unfolded protein response4.51E-03
99GO:0006470: protein dephosphorylation5.05E-03
100GO:0009835: fruit ripening5.11E-03
101GO:0046685: response to arsenic-containing substance5.11E-03
102GO:0006098: pentose-phosphate shunt5.11E-03
103GO:0051865: protein autoubiquitination5.11E-03
104GO:0090333: regulation of stomatal closure5.11E-03
105GO:0009056: catabolic process5.11E-03
106GO:0009867: jasmonic acid mediated signaling pathway5.38E-03
107GO:0045087: innate immune response5.38E-03
108GO:1900426: positive regulation of defense response to bacterium5.74E-03
109GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway5.74E-03
110GO:0007064: mitotic sister chromatid cohesion6.38E-03
111GO:0043069: negative regulation of programmed cell death6.38E-03
112GO:0006887: exocytosis6.39E-03
113GO:0016567: protein ubiquitination6.91E-03
114GO:0012501: programmed cell death7.76E-03
115GO:0002213: defense response to insect7.76E-03
116GO:0010105: negative regulation of ethylene-activated signaling pathway7.76E-03
117GO:0006890: retrograde vesicle-mediated transport, Golgi to ER7.76E-03
118GO:0009738: abscisic acid-activated signaling pathway8.33E-03
119GO:0031347: regulation of defense response8.40E-03
120GO:0000165: MAPK cascade8.40E-03
121GO:0042538: hyperosmotic salinity response8.71E-03
122GO:0002237: response to molecule of bacterial origin9.23E-03
123GO:0007165: signal transduction9.23E-03
124GO:0009737: response to abscisic acid9.64E-03
125GO:0009969: xyloglucan biosynthetic process1.00E-02
126GO:0070588: calcium ion transmembrane transport1.00E-02
127GO:0046854: phosphatidylinositol phosphorylation1.00E-02
128GO:0009116: nucleoside metabolic process1.16E-02
129GO:0005992: trehalose biosynthetic process1.16E-02
130GO:0019915: lipid storage1.33E-02
131GO:0048278: vesicle docking1.33E-02
132GO:0003333: amino acid transmembrane transport1.33E-02
133GO:0009624: response to nematode1.34E-02
134GO:0016226: iron-sulfur cluster assembly1.42E-02
135GO:0009742: brassinosteroid mediated signaling pathway1.42E-02
136GO:2000022: regulation of jasmonic acid mediated signaling pathway1.42E-02
137GO:0071456: cellular response to hypoxia1.42E-02
138GO:0009693: ethylene biosynthetic process1.51E-02
139GO:0071215: cellular response to abscisic acid stimulus1.51E-02
140GO:0009625: response to insect1.51E-02
141GO:0019722: calcium-mediated signaling1.60E-02
142GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.70E-02
143GO:0042147: retrograde transport, endosome to Golgi1.70E-02
144GO:0042631: cellular response to water deprivation1.79E-02
145GO:0009741: response to brassinosteroid1.89E-02
146GO:0009646: response to absence of light1.99E-02
147GO:0061025: membrane fusion1.99E-02
148GO:0008654: phospholipid biosynthetic process2.09E-02
149GO:0002229: defense response to oomycetes2.19E-02
150GO:0010193: response to ozone2.19E-02
151GO:0006891: intra-Golgi vesicle-mediated transport2.19E-02
152GO:0010150: leaf senescence2.31E-02
153GO:0030163: protein catabolic process2.41E-02
154GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.59E-02
155GO:0006904: vesicle docking involved in exocytosis2.63E-02
156GO:0051607: defense response to virus2.74E-02
157GO:0010468: regulation of gene expression2.76E-02
158GO:0009617: response to bacterium2.76E-02
159GO:0009911: positive regulation of flower development2.85E-02
160GO:0001666: response to hypoxia2.85E-02
161GO:0010029: regulation of seed germination2.97E-02
162GO:0009816: defense response to bacterium, incompatible interaction2.97E-02
163GO:0009627: systemic acquired resistance3.09E-02
164GO:0006906: vesicle fusion3.09E-02
165GO:0016049: cell growth3.32E-02
166GO:0008219: cell death3.45E-02
167GO:0009832: plant-type cell wall biogenesis3.57E-02
168GO:0010119: regulation of stomatal movement3.82E-02
169GO:0006970: response to osmotic stress3.85E-02
170GO:0080167: response to karrikin4.42E-02
171GO:0016192: vesicle-mediated transport4.65E-02
172GO:0042542: response to hydrogen peroxide4.74E-02
173GO:0050832: defense response to fungus4.79E-02
174GO:0051707: response to other organism4.88E-02
RankGO TermAdjusted P value
1GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
2GO:0016301: kinase activity3.14E-10
3GO:0005509: calcium ion binding3.19E-07
4GO:0005524: ATP binding4.80E-07
5GO:0005515: protein binding8.02E-06
6GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.76E-06
7GO:0009931: calcium-dependent protein serine/threonine kinase activity3.12E-05
8GO:0004683: calmodulin-dependent protein kinase activity3.46E-05
9GO:0004664: prephenate dehydratase activity3.53E-05
10GO:0047769: arogenate dehydratase activity3.53E-05
11GO:0004674: protein serine/threonine kinase activity1.10E-04
12GO:0004708: MAP kinase kinase activity1.94E-04
13GO:0032050: clathrin heavy chain binding2.22E-04
14GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.22E-04
15GO:0015085: calcium ion transmembrane transporter activity2.22E-04
16GO:0004657: proline dehydrogenase activity2.22E-04
17GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity2.22E-04
18GO:0031127: alpha-(1,2)-fucosyltransferase activity2.22E-04
19GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.09E-04
20GO:0004842: ubiquitin-protein transferase activity3.57E-04
21GO:0004672: protein kinase activity4.16E-04
22GO:0003979: UDP-glucose 6-dehydrogenase activity8.05E-04
23GO:0033612: receptor serine/threonine kinase binding1.13E-03
24GO:0015189: L-lysine transmembrane transporter activity1.15E-03
25GO:0015181: arginine transmembrane transporter activity1.15E-03
26GO:0005516: calmodulin binding1.21E-03
27GO:0005313: L-glutamate transmembrane transporter activity1.53E-03
28GO:0043495: protein anchor1.53E-03
29GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.53E-03
30GO:0010294: abscisic acid glucosyltransferase activity1.95E-03
31GO:0004623: phospholipase A2 activity1.95E-03
32GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.95E-03
33GO:0008519: ammonium transmembrane transporter activity2.40E-03
34GO:0004012: phospholipid-translocating ATPase activity2.89E-03
35GO:0016597: amino acid binding3.08E-03
36GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.40E-03
37GO:0004806: triglyceride lipase activity3.84E-03
38GO:0004721: phosphoprotein phosphatase activity3.84E-03
39GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity3.94E-03
40GO:0005544: calcium-dependent phospholipid binding3.94E-03
41GO:0004714: transmembrane receptor protein tyrosine kinase activity3.94E-03
42GO:0004430: 1-phosphatidylinositol 4-kinase activity4.51E-03
43GO:0008417: fucosyltransferase activity5.11E-03
44GO:0015174: basic amino acid transmembrane transporter activity5.74E-03
45GO:0047617: acyl-CoA hydrolase activity5.74E-03
46GO:0004805: trehalose-phosphatase activity6.38E-03
47GO:0005543: phospholipid binding7.06E-03
48GO:0005388: calcium-transporting ATPase activity8.48E-03
49GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism8.48E-03
50GO:0016298: lipase activity9.69E-03
51GO:0008061: chitin binding1.00E-02
52GO:0043130: ubiquitin binding1.16E-02
53GO:0043424: protein histidine kinase binding1.24E-02
54GO:0004707: MAP kinase activity1.33E-02
55GO:0004722: protein serine/threonine phosphatase activity1.38E-02
56GO:0015035: protein disulfide oxidoreductase activity1.38E-02
57GO:0003924: GTPase activity1.60E-02
58GO:0004197: cysteine-type endopeptidase activity2.30E-02
59GO:0042802: identical protein binding2.94E-02
60GO:0030247: polysaccharide binding3.20E-02
61GO:0015238: drug transmembrane transporter activity3.57E-02
62GO:0043531: ADP binding3.92E-02
63GO:0003746: translation elongation factor activity4.08E-02
64GO:0016740: transferase activity4.20E-02
65GO:0000149: SNARE binding4.34E-02
66GO:0061630: ubiquitin protein ligase activity4.65E-02
67GO:0030246: carbohydrate binding4.73E-02
68GO:0005484: SNAP receptor activity4.88E-02
69GO:0043565: sequence-specific DNA binding4.96E-02
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Gene type



Gene DE type