co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G25530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
8	GO:0009106: lipoate metabolic process	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0042820: vitamin B6 catabolic process	0.00E+00
11	GO:0015995: chlorophyll biosynthetic process	1.12E-09
12	GO:0071482: cellular response to light stimulus	5.89E-06
13	GO:0006782: protoporphyrinogen IX biosynthetic process	1.47E-05
14	GO:2001141: regulation of RNA biosynthetic process	2.04E-05
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.74E-05
16	GO:0010190: cytochrome b6f complex assembly	8.74E-05
17	GO:0051775: response to redox state	2.29E-04
18	GO:0000476: maturation of 4.5S rRNA	2.29E-04
19	GO:0009443: pyridoxal 5'-phosphate salvage	2.29E-04
20	GO:0000967: rRNA 5'-end processing	2.29E-04
21	GO:0015671: oxygen transport	2.29E-04
22	GO:0042547: cell wall modification involved in multidimensional cell growth	2.29E-04
23	GO:0006783: heme biosynthetic process	3.04E-04
24	GO:0009089: lysine biosynthetic process via diaminopimelate	4.90E-04
25	GO:0006352: DNA-templated transcription, initiation	4.90E-04
26	GO:0034470: ncRNA processing	5.10E-04
27	GO:0010198: synergid death	5.10E-04
28	GO:0006435: threonyl-tRNA aminoacylation	5.10E-04
29	GO:1900871: chloroplast mRNA modification	5.10E-04
30	GO:0006432: phenylalanyl-tRNA aminoacylation	5.10E-04
31	GO:0018026: peptidyl-lysine monomethylation	5.10E-04
32	GO:0000256: allantoin catabolic process	5.10E-04
33	GO:0015979: photosynthesis	5.57E-04
34	GO:0010207: photosystem II assembly	7.15E-04
35	GO:0005977: glycogen metabolic process	8.29E-04
36	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.29E-04
37	GO:0010136: ureide catabolic process	8.29E-04
38	GO:0015940: pantothenate biosynthetic process	8.29E-04
39	GO:0010371: regulation of gibberellin biosynthetic process	1.18E-03
40	GO:0048511: rhythmic process	1.18E-03
41	GO:0009102: biotin biosynthetic process	1.18E-03
42	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.18E-03
43	GO:0006145: purine nucleobase catabolic process	1.18E-03
44	GO:0006424: glutamyl-tRNA aminoacylation	1.18E-03
45	GO:0010021: amylopectin biosynthetic process	1.57E-03
46	GO:0009765: photosynthesis, light harvesting	1.57E-03
47	GO:0016117: carotenoid biosynthetic process	1.65E-03
48	GO:0009107: lipoate biosynthetic process	2.01E-03
49	GO:0016123: xanthophyll biosynthetic process	2.01E-03
50	GO:0016120: carotene biosynthetic process	2.01E-03
51	GO:0000304: response to singlet oxygen	2.01E-03
52	GO:0032543: mitochondrial translation	2.01E-03
53	GO:0045038: protein import into chloroplast thylakoid membrane	2.01E-03
54	GO:0009735: response to cytokinin	2.04E-03
55	GO:0006655: phosphatidylglycerol biosynthetic process	2.48E-03
56	GO:1901259: chloroplast rRNA processing	2.97E-03
57	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.50E-03
58	GO:0006412: translation	3.65E-03
59	GO:0048564: photosystem I assembly	4.06E-03
60	GO:0017004: cytochrome complex assembly	4.65E-03
61	GO:0022900: electron transport chain	4.65E-03
62	GO:0032544: plastid translation	4.65E-03
63	GO:0055114: oxidation-reduction process	4.93E-03
64	GO:0007568: aging	5.13E-03
65	GO:0019432: triglyceride biosynthetic process	5.27E-03
66	GO:0009821: alkaloid biosynthetic process	5.27E-03
67	GO:0010206: photosystem II repair	5.27E-03
68	GO:0006779: porphyrin-containing compound biosynthetic process	5.91E-03
69	GO:0031425: chloroplast RNA processing	5.91E-03
70	GO:0006631: fatty acid metabolic process	6.68E-03
71	GO:0009744: response to sucrose	7.25E-03
72	GO:0009684: indoleacetic acid biosynthetic process	7.28E-03
73	GO:0008285: negative regulation of cell proliferation	7.28E-03
74	GO:0019684: photosynthesis, light reaction	7.28E-03
75	GO:0016024: CDP-diacylglycerol biosynthetic process	8.00E-03
76	GO:0009725: response to hormone	8.75E-03
77	GO:0006094: gluconeogenesis	8.75E-03
78	GO:0019762: glucosinolate catabolic process	1.11E-02
79	GO:0010073: meristem maintenance	1.28E-02
80	GO:0007017: microtubule-based process	1.28E-02
81	GO:0061077: chaperone-mediated protein folding	1.37E-02
82	GO:0031408: oxylipin biosynthetic process	1.37E-02
83	GO:0016114: terpenoid biosynthetic process	1.37E-02
84	GO:0019748: secondary metabolic process	1.46E-02
85	GO:0009814: defense response, incompatible interaction	1.46E-02
86	GO:0009625: response to insect	1.56E-02
87	GO:0010227: floral organ abscission	1.56E-02
88	GO:0006012: galactose metabolic process	1.56E-02
89	GO:0006397: mRNA processing	1.79E-02
90	GO:0042335: cuticle development	1.85E-02
91	GO:0010154: fruit development	1.95E-02
92	GO:0042752: regulation of circadian rhythm	2.05E-02
93	GO:0019252: starch biosynthetic process	2.16E-02
94	GO:0006413: translational initiation	2.25E-02
95	GO:0042742: defense response to bacterium	2.70E-02
96	GO:0016126: sterol biosynthetic process	2.94E-02
97	GO:0010027: thylakoid membrane organization	2.94E-02
98	GO:0009627: systemic acquired resistance	3.19E-02
99	GO:0009817: defense response to fungus, incompatible interaction	3.56E-02
100	GO:0009813: flavonoid biosynthetic process	3.68E-02
101	GO:0009658: chloroplast organization	3.74E-02
102	GO:0042254: ribosome biogenesis	3.81E-02
103	GO:0045087: innate immune response	4.21E-02
104	GO:0080167: response to karrikin	4.62E-02
105	GO:0042542: response to hydrogen peroxide	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
8	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
9	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
10	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
11	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
12	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
13	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
14	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
15	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
16	GO:0050613: delta14-sterol reductase activity	0.00E+00
17	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
18	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.46E-06
19	GO:0070402: NADPH binding	8.95E-06
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-05
21	GO:0001053: plastid sigma factor activity	3.72E-05
22	GO:0016987: sigma factor activity	3.72E-05
23	GO:0004040: amidase activity	5.95E-05
24	GO:0005528: FK506 binding	6.15E-05
25	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.29E-04
26	GO:0005344: oxygen transporter activity	2.29E-04
27	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.29E-04
28	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.29E-04
29	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.29E-04
30	GO:0080042: ADP-glucose pyrophosphohydrolase activity	2.29E-04
31	GO:0004856: xylulokinase activity	2.29E-04
32	GO:0009496: plastoquinol--plastocyanin reductase activity	2.29E-04
33	GO:0005080: protein kinase C binding	2.29E-04
34	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.29E-04
35	GO:0017118: lipoyltransferase activity	5.10E-04
36	GO:0080041: ADP-ribose pyrophosphohydrolase activity	5.10E-04
37	GO:0016415: octanoyltransferase activity	5.10E-04
38	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.10E-04
39	GO:0004826: phenylalanine-tRNA ligase activity	5.10E-04
40	GO:0016630: protochlorophyllide reductase activity	5.10E-04
41	GO:0004829: threonine-tRNA ligase activity	5.10E-04
42	GO:0019156: isoamylase activity	5.10E-04
43	GO:0004148: dihydrolipoyl dehydrogenase activity	8.29E-04
44	GO:0005504: fatty acid binding	8.29E-04
45	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.29E-04
46	GO:0030267: glyoxylate reductase (NADP) activity	8.29E-04
47	GO:0043023: ribosomal large subunit binding	1.18E-03
48	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.18E-03
49	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.18E-03
50	GO:0016851: magnesium chelatase activity	1.18E-03
51	GO:0004792: thiosulfate sulfurtransferase activity	1.18E-03
52	GO:0016491: oxidoreductase activity	1.23E-03
53	GO:0016279: protein-lysine N-methyltransferase activity	1.57E-03
54	GO:0004045: aminoacyl-tRNA hydrolase activity	1.57E-03
55	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.57E-03
56	GO:0045430: chalcone isomerase activity	1.57E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.01E-03
58	GO:0003959: NADPH dehydrogenase activity	2.01E-03
59	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.48E-03
60	GO:0004556: alpha-amylase activity	2.48E-03
61	GO:0051920: peroxiredoxin activity	2.97E-03
62	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.97E-03
63	GO:0016209: antioxidant activity	4.06E-03
64	GO:0008312: 7S RNA binding	4.06E-03
65	GO:0004034: aldose 1-epimerase activity	4.06E-03
66	GO:0004033: aldo-keto reductase (NADP) activity	4.06E-03
67	GO:0004222: metalloendopeptidase activity	4.89E-03
68	GO:0003746: translation elongation factor activity	5.62E-03
69	GO:0016844: strictosidine synthase activity	5.91E-03
70	GO:0047372: acylglycerol lipase activity	7.28E-03
71	GO:0051537: 2 iron, 2 sulfur cluster binding	7.84E-03
72	GO:0000049: tRNA binding	8.00E-03
73	GO:0031072: heat shock protein binding	8.75E-03
74	GO:0003735: structural constituent of ribosome	9.21E-03
75	GO:0008266: poly(U) RNA binding	9.52E-03
76	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.78E-03
77	GO:0016787: hydrolase activity	1.06E-02
78	GO:0004857: enzyme inhibitor activity	1.20E-02
79	GO:0030570: pectate lyase activity	1.56E-02
80	GO:0003756: protein disulfide isomerase activity	1.65E-02
81	GO:0019843: rRNA binding	1.75E-02
82	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.80E-02
83	GO:0008080: N-acetyltransferase activity	1.95E-02
84	GO:0005525: GTP binding	1.98E-02
85	GO:0016853: isomerase activity	2.05E-02
86	GO:0004872: receptor activity	2.16E-02
87	GO:0048038: quinone binding	2.27E-02
88	GO:0003723: RNA binding	2.37E-02
89	GO:0005509: calcium ion binding	2.39E-02
90	GO:0008483: transaminase activity	2.71E-02
91	GO:0008237: metallopeptidase activity	2.71E-02
92	GO:0005200: structural constituent of cytoskeleton	2.71E-02
93	GO:0003743: translation initiation factor activity	2.83E-02
94	GO:0016887: ATPase activity	2.94E-02
95	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.07E-02
96	GO:0004721: phosphoprotein phosphatase activity	3.31E-02
97	GO:0008236: serine-type peptidase activity	3.43E-02
98	GO:0004601: peroxidase activity	3.74E-02
99	GO:0016788: hydrolase activity, acting on ester bonds	3.81E-02
100	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.21E-02
101	GO:0003993: acid phosphatase activity	4.34E-02
102	GO:0050661: NADP binding	4.62E-02
103	GO:0051539: 4 iron, 4 sulfur cluster binding	4.62E-02
104	GO:0003729: mRNA binding	4.79E-02