GO Enrichment Analysis of Co-expressed Genes with
AT3G25480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 2 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0015843: methylammonium transport | 0.00E+00 |
| 5 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 6 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 7 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0009451: RNA modification | 1.33E-08 |
| 9 | GO:0009658: chloroplast organization | 7.04E-08 |
| 10 | GO:0042793: transcription from plastid promoter | 5.32E-07 |
| 11 | GO:0009657: plastid organization | 3.43E-06 |
| 12 | GO:0048437: floral organ development | 1.13E-04 |
| 13 | GO:0009646: response to absence of light | 1.23E-04 |
| 14 | GO:0070509: calcium ion import | 1.84E-04 |
| 15 | GO:0010063: positive regulation of trichoblast fate specification | 1.84E-04 |
| 16 | GO:0010480: microsporocyte differentiation | 1.84E-04 |
| 17 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.84E-04 |
| 18 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.84E-04 |
| 19 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.15E-04 |
| 20 | GO:0070981: L-asparagine biosynthetic process | 4.15E-04 |
| 21 | GO:0009662: etioplast organization | 4.15E-04 |
| 22 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 4.15E-04 |
| 23 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.15E-04 |
| 24 | GO:0006529: asparagine biosynthetic process | 4.15E-04 |
| 25 | GO:0060359: response to ammonium ion | 4.15E-04 |
| 26 | GO:0048255: mRNA stabilization | 4.15E-04 |
| 27 | GO:0010020: chloroplast fission | 5.30E-04 |
| 28 | GO:0042780: tRNA 3'-end processing | 6.76E-04 |
| 29 | GO:0043157: response to cation stress | 6.76E-04 |
| 30 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 6.76E-04 |
| 31 | GO:0016998: cell wall macromolecule catabolic process | 8.78E-04 |
| 32 | GO:0006164: purine nucleotide biosynthetic process | 9.65E-04 |
| 33 | GO:0031048: chromatin silencing by small RNA | 9.65E-04 |
| 34 | GO:0016556: mRNA modification | 9.65E-04 |
| 35 | GO:0015696: ammonium transport | 9.65E-04 |
| 36 | GO:0046739: transport of virus in multicellular host | 9.65E-04 |
| 37 | GO:2000904: regulation of starch metabolic process | 9.65E-04 |
| 38 | GO:0043572: plastid fission | 9.65E-04 |
| 39 | GO:2001141: regulation of RNA biosynthetic process | 9.65E-04 |
| 40 | GO:1902476: chloride transmembrane transport | 9.65E-04 |
| 41 | GO:0010071: root meristem specification | 9.65E-04 |
| 42 | GO:0010239: chloroplast mRNA processing | 9.65E-04 |
| 43 | GO:0044211: CTP salvage | 9.65E-04 |
| 44 | GO:0019048: modulation by virus of host morphology or physiology | 9.65E-04 |
| 45 | GO:0051567: histone H3-K9 methylation | 1.28E-03 |
| 46 | GO:0015846: polyamine transport | 1.28E-03 |
| 47 | GO:0044206: UMP salvage | 1.28E-03 |
| 48 | GO:0044205: 'de novo' UMP biosynthetic process | 1.28E-03 |
| 49 | GO:0072488: ammonium transmembrane transport | 1.28E-03 |
| 50 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.41E-03 |
| 51 | GO:0016131: brassinosteroid metabolic process | 1.63E-03 |
| 52 | GO:1902183: regulation of shoot apical meristem development | 1.63E-03 |
| 53 | GO:0016123: xanthophyll biosynthetic process | 1.63E-03 |
| 54 | GO:0010583: response to cyclopentenone | 1.85E-03 |
| 55 | GO:0032502: developmental process | 1.85E-03 |
| 56 | GO:0006206: pyrimidine nucleobase metabolic process | 2.01E-03 |
| 57 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.01E-03 |
| 58 | GO:0009228: thiamine biosynthetic process | 2.01E-03 |
| 59 | GO:0016458: gene silencing | 2.01E-03 |
| 60 | GO:0009959: negative gravitropism | 2.01E-03 |
| 61 | GO:0042026: protein refolding | 2.41E-03 |
| 62 | GO:1901259: chloroplast rRNA processing | 2.41E-03 |
| 63 | GO:0009082: branched-chain amino acid biosynthetic process | 2.41E-03 |
| 64 | GO:0006458: 'de novo' protein folding | 2.41E-03 |
| 65 | GO:0017148: negative regulation of translation | 2.41E-03 |
| 66 | GO:0009942: longitudinal axis specification | 2.41E-03 |
| 67 | GO:0009099: valine biosynthetic process | 2.41E-03 |
| 68 | GO:0009955: adaxial/abaxial pattern specification | 2.41E-03 |
| 69 | GO:0009790: embryo development | 2.45E-03 |
| 70 | GO:0006821: chloride transport | 2.83E-03 |
| 71 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 2.83E-03 |
| 72 | GO:0006955: immune response | 2.83E-03 |
| 73 | GO:0048528: post-embryonic root development | 2.83E-03 |
| 74 | GO:0010411: xyloglucan metabolic process | 2.94E-03 |
| 75 | GO:0048481: plant ovule development | 3.25E-03 |
| 76 | GO:0042255: ribosome assembly | 3.28E-03 |
| 77 | GO:0001522: pseudouridine synthesis | 3.28E-03 |
| 78 | GO:0006353: DNA-templated transcription, termination | 3.28E-03 |
| 79 | GO:0048564: photosystem I assembly | 3.28E-03 |
| 80 | GO:0010497: plasmodesmata-mediated intercellular transport | 3.75E-03 |
| 81 | GO:0009097: isoleucine biosynthetic process | 3.75E-03 |
| 82 | GO:0007389: pattern specification process | 3.75E-03 |
| 83 | GO:0071482: cellular response to light stimulus | 3.75E-03 |
| 84 | GO:0009827: plant-type cell wall modification | 3.75E-03 |
| 85 | GO:2000024: regulation of leaf development | 4.25E-03 |
| 86 | GO:0000373: Group II intron splicing | 4.25E-03 |
| 87 | GO:0000902: cell morphogenesis | 4.25E-03 |
| 88 | GO:0006098: pentose-phosphate shunt | 4.25E-03 |
| 89 | GO:0030422: production of siRNA involved in RNA interference | 5.30E-03 |
| 90 | GO:0042254: ribosome biogenesis | 5.39E-03 |
| 91 | GO:0042546: cell wall biogenesis | 5.51E-03 |
| 92 | GO:0006352: DNA-templated transcription, initiation | 5.85E-03 |
| 93 | GO:0048229: gametophyte development | 5.85E-03 |
| 94 | GO:0016485: protein processing | 5.85E-03 |
| 95 | GO:0010015: root morphogenesis | 5.85E-03 |
| 96 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.43E-03 |
| 97 | GO:0045037: protein import into chloroplast stroma | 6.43E-03 |
| 98 | GO:0009793: embryo development ending in seed dormancy | 6.66E-03 |
| 99 | GO:0080167: response to karrikin | 6.92E-03 |
| 100 | GO:0010075: regulation of meristem growth | 7.03E-03 |
| 101 | GO:0006094: gluconeogenesis | 7.03E-03 |
| 102 | GO:0009767: photosynthetic electron transport chain | 7.03E-03 |
| 103 | GO:0006541: glutamine metabolic process | 7.64E-03 |
| 104 | GO:0010207: photosystem II assembly | 7.64E-03 |
| 105 | GO:0009934: regulation of meristem structural organization | 7.64E-03 |
| 106 | GO:0090351: seedling development | 8.27E-03 |
| 107 | GO:0070588: calcium ion transmembrane transport | 8.27E-03 |
| 108 | GO:0048316: seed development | 8.72E-03 |
| 109 | GO:0048367: shoot system development | 8.72E-03 |
| 110 | GO:0000027: ribosomal large subunit assembly | 9.60E-03 |
| 111 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.60E-03 |
| 112 | GO:0009116: nucleoside metabolic process | 9.60E-03 |
| 113 | GO:0009553: embryo sac development | 9.87E-03 |
| 114 | GO:0006825: copper ion transport | 1.03E-02 |
| 115 | GO:0019953: sexual reproduction | 1.03E-02 |
| 116 | GO:0006418: tRNA aminoacylation for protein translation | 1.03E-02 |
| 117 | GO:0061077: chaperone-mediated protein folding | 1.10E-02 |
| 118 | GO:0006306: DNA methylation | 1.10E-02 |
| 119 | GO:0006468: protein phosphorylation | 1.13E-02 |
| 120 | GO:0006730: one-carbon metabolic process | 1.17E-02 |
| 121 | GO:0007005: mitochondrion organization | 1.17E-02 |
| 122 | GO:0080092: regulation of pollen tube growth | 1.17E-02 |
| 123 | GO:0048364: root development | 1.20E-02 |
| 124 | GO:0010082: regulation of root meristem growth | 1.25E-02 |
| 125 | GO:0042127: regulation of cell proliferation | 1.32E-02 |
| 126 | GO:0016117: carotenoid biosynthetic process | 1.40E-02 |
| 127 | GO:0008033: tRNA processing | 1.48E-02 |
| 128 | GO:0048653: anther development | 1.48E-02 |
| 129 | GO:0010305: leaf vascular tissue pattern formation | 1.56E-02 |
| 130 | GO:0006662: glycerol ether metabolic process | 1.56E-02 |
| 131 | GO:0048868: pollen tube development | 1.56E-02 |
| 132 | GO:0006342: chromatin silencing | 1.56E-02 |
| 133 | GO:0009741: response to brassinosteroid | 1.56E-02 |
| 134 | GO:0048544: recognition of pollen | 1.64E-02 |
| 135 | GO:0008654: phospholipid biosynthetic process | 1.73E-02 |
| 136 | GO:0007623: circadian rhythm | 1.76E-02 |
| 137 | GO:0016132: brassinosteroid biosynthetic process | 1.81E-02 |
| 138 | GO:0009630: gravitropism | 1.90E-02 |
| 139 | GO:0007166: cell surface receptor signaling pathway | 2.02E-02 |
| 140 | GO:0010252: auxin homeostasis | 2.07E-02 |
| 141 | GO:0009828: plant-type cell wall loosening | 2.07E-02 |
| 142 | GO:0008380: RNA splicing | 2.11E-02 |
| 143 | GO:0051607: defense response to virus | 2.26E-02 |
| 144 | GO:0001666: response to hypoxia | 2.35E-02 |
| 145 | GO:0010027: thylakoid membrane organization | 2.35E-02 |
| 146 | GO:0009816: defense response to bacterium, incompatible interaction | 2.45E-02 |
| 147 | GO:0006974: cellular response to DNA damage stimulus | 2.55E-02 |
| 148 | GO:0000160: phosphorelay signal transduction system | 2.94E-02 |
| 149 | GO:0009813: flavonoid biosynthetic process | 2.94E-02 |
| 150 | GO:0055114: oxidation-reduction process | 3.11E-02 |
| 151 | GO:0048366: leaf development | 3.22E-02 |
| 152 | GO:0009637: response to blue light | 3.36E-02 |
| 153 | GO:0009853: photorespiration | 3.36E-02 |
| 154 | GO:0034599: cellular response to oxidative stress | 3.47E-02 |
| 155 | GO:0006631: fatty acid metabolic process | 3.80E-02 |
| 156 | GO:0008283: cell proliferation | 4.03E-02 |
| 157 | GO:0010114: response to red light | 4.03E-02 |
| 158 | GO:0009926: auxin polar transport | 4.03E-02 |
| 159 | GO:0009664: plant-type cell wall organization | 4.73E-02 |
| 160 | GO:0042538: hyperosmotic salinity response | 4.73E-02 |
| 161 | GO:0009736: cytokinin-activated signaling pathway | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
| 2 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 3 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 4 | GO:0019808: polyamine binding | 0.00E+00 |
| 5 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 6 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
| 7 | GO:0004519: endonuclease activity | 7.24E-08 |
| 8 | GO:0003723: RNA binding | 3.14E-06 |
| 9 | GO:0019843: rRNA binding | 3.04E-05 |
| 10 | GO:0004008: copper-exporting ATPase activity | 1.84E-04 |
| 11 | GO:0004071: aspartate-ammonia ligase activity | 1.84E-04 |
| 12 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 1.84E-04 |
| 13 | GO:0004160: dihydroxy-acid dehydratase activity | 1.84E-04 |
| 14 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.84E-04 |
| 15 | GO:0004830: tryptophan-tRNA ligase activity | 1.84E-04 |
| 16 | GO:0042834: peptidoglycan binding | 1.84E-04 |
| 17 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 4.15E-04 |
| 18 | GO:0010291: carotene beta-ring hydroxylase activity | 4.15E-04 |
| 19 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 4.15E-04 |
| 20 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 6.76E-04 |
| 21 | GO:0046524: sucrose-phosphate synthase activity | 6.76E-04 |
| 22 | GO:0070330: aromatase activity | 6.76E-04 |
| 23 | GO:0017150: tRNA dihydrouridine synthase activity | 6.76E-04 |
| 24 | GO:0035197: siRNA binding | 9.65E-04 |
| 25 | GO:0043023: ribosomal large subunit binding | 9.65E-04 |
| 26 | GO:0005253: anion channel activity | 1.28E-03 |
| 27 | GO:0001053: plastid sigma factor activity | 1.28E-03 |
| 28 | GO:0004845: uracil phosphoribosyltransferase activity | 1.28E-03 |
| 29 | GO:0016836: hydro-lyase activity | 1.28E-03 |
| 30 | GO:0016987: sigma factor activity | 1.28E-03 |
| 31 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.63E-03 |
| 32 | GO:0018685: alkane 1-monooxygenase activity | 1.63E-03 |
| 33 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.74E-03 |
| 34 | GO:0008519: ammonium transmembrane transporter activity | 2.01E-03 |
| 35 | GO:0005247: voltage-gated chloride channel activity | 2.01E-03 |
| 36 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.01E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 2.01E-03 |
| 38 | GO:0004849: uridine kinase activity | 2.41E-03 |
| 39 | GO:0008195: phosphatidate phosphatase activity | 2.41E-03 |
| 40 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.94E-03 |
| 41 | GO:0004222: metalloendopeptidase activity | 3.59E-03 |
| 42 | GO:0005375: copper ion transmembrane transporter activity | 3.75E-03 |
| 43 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.76E-03 |
| 44 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.69E-03 |
| 45 | GO:0009672: auxin:proton symporter activity | 4.76E-03 |
| 46 | GO:0043621: protein self-association | 5.73E-03 |
| 47 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.85E-03 |
| 48 | GO:0044183: protein binding involved in protein folding | 5.85E-03 |
| 49 | GO:0004521: endoribonuclease activity | 6.43E-03 |
| 50 | GO:0010329: auxin efflux transmembrane transporter activity | 7.03E-03 |
| 51 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 7.03E-03 |
| 52 | GO:0031072: heat shock protein binding | 7.03E-03 |
| 53 | GO:0005262: calcium channel activity | 7.03E-03 |
| 54 | GO:0009982: pseudouridine synthase activity | 7.03E-03 |
| 55 | GO:0004672: protein kinase activity | 9.24E-03 |
| 56 | GO:0051082: unfolded protein binding | 1.02E-02 |
| 57 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.03E-02 |
| 58 | GO:0033612: receptor serine/threonine kinase binding | 1.10E-02 |
| 59 | GO:0008408: 3'-5' exonuclease activity | 1.10E-02 |
| 60 | GO:0003727: single-stranded RNA binding | 1.32E-02 |
| 61 | GO:0005524: ATP binding | 1.40E-02 |
| 62 | GO:0047134: protein-disulfide reductase activity | 1.40E-02 |
| 63 | GO:0004812: aminoacyl-tRNA ligase activity | 1.40E-02 |
| 64 | GO:0004527: exonuclease activity | 1.56E-02 |
| 65 | GO:0003713: transcription coactivator activity | 1.56E-02 |
| 66 | GO:0008536: Ran GTPase binding | 1.56E-02 |
| 67 | GO:0003735: structural constituent of ribosome | 1.56E-02 |
| 68 | GO:0050662: coenzyme binding | 1.64E-02 |
| 69 | GO:0004791: thioredoxin-disulfide reductase activity | 1.64E-02 |
| 70 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.64E-02 |
| 71 | GO:0019901: protein kinase binding | 1.73E-02 |
| 72 | GO:0000156: phosphorelay response regulator activity | 1.99E-02 |
| 73 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.99E-02 |
| 74 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.17E-02 |
| 75 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.17E-02 |
| 76 | GO:0004721: phosphoprotein phosphatase activity | 2.64E-02 |
| 77 | GO:0008236: serine-type peptidase activity | 2.74E-02 |
| 78 | GO:0004674: protein serine/threonine kinase activity | 2.82E-02 |
| 79 | GO:0003682: chromatin binding | 2.89E-02 |
| 80 | GO:0050660: flavin adenine dinucleotide binding | 3.16E-02 |
| 81 | GO:0020037: heme binding | 3.31E-02 |
| 82 | GO:0003746: translation elongation factor activity | 3.36E-02 |
| 83 | GO:0003993: acid phosphatase activity | 3.47E-02 |
| 84 | GO:0019825: oxygen binding | 3.64E-02 |
| 85 | GO:0042803: protein homodimerization activity | 4.24E-02 |
| 86 | GO:0005525: GTP binding | 4.35E-02 |
| 87 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.98E-02 |