GO Enrichment Analysis of Co-expressed Genes with
AT3G25470
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 2 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 3 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 4 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 5 | GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA | 0.00E+00 |
| 6 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 7 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 8 | GO:0080127: fruit septum development | 0.00E+00 |
| 9 | GO:0042793: transcription from plastid promoter | 3.71E-05 |
| 10 | GO:0042255: ribosome assembly | 9.09E-05 |
| 11 | GO:0006353: DNA-templated transcription, termination | 9.09E-05 |
| 12 | GO:1903866: palisade mesophyll development | 1.35E-04 |
| 13 | GO:0033206: meiotic cytokinesis | 1.35E-04 |
| 14 | GO:0016441: posttranscriptional gene silencing | 2.00E-04 |
| 15 | GO:0006397: mRNA processing | 2.44E-04 |
| 16 | GO:1901529: positive regulation of anion channel activity | 3.11E-04 |
| 17 | GO:0010569: regulation of double-strand break repair via homologous recombination | 3.11E-04 |
| 18 | GO:2000071: regulation of defense response by callose deposition | 3.11E-04 |
| 19 | GO:0080009: mRNA methylation | 3.11E-04 |
| 20 | GO:0010020: chloroplast fission | 3.49E-04 |
| 21 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 5.13E-04 |
| 22 | GO:1904278: positive regulation of wax biosynthetic process | 5.13E-04 |
| 23 | GO:0090391: granum assembly | 5.13E-04 |
| 24 | GO:0006364: rRNA processing | 5.74E-04 |
| 25 | GO:0009733: response to auxin | 6.83E-04 |
| 26 | GO:0009152: purine ribonucleotide biosynthetic process | 7.34E-04 |
| 27 | GO:0007276: gamete generation | 7.34E-04 |
| 28 | GO:0016556: mRNA modification | 7.34E-04 |
| 29 | GO:0008033: tRNA processing | 8.75E-04 |
| 30 | GO:0006808: regulation of nitrogen utilization | 9.73E-04 |
| 31 | GO:0080156: mitochondrial mRNA modification | 1.15E-03 |
| 32 | GO:0016123: xanthophyll biosynthetic process | 1.23E-03 |
| 33 | GO:0016120: carotene biosynthetic process | 1.23E-03 |
| 34 | GO:0016131: brassinosteroid metabolic process | 1.23E-03 |
| 35 | GO:0016554: cytidine to uridine editing | 1.51E-03 |
| 36 | GO:0003006: developmental process involved in reproduction | 1.51E-03 |
| 37 | GO:0009643: photosynthetic acclimation | 1.51E-03 |
| 38 | GO:0040008: regulation of growth | 1.66E-03 |
| 39 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.81E-03 |
| 40 | GO:2000033: regulation of seed dormancy process | 1.81E-03 |
| 41 | GO:0006401: RNA catabolic process | 2.12E-03 |
| 42 | GO:0010374: stomatal complex development | 2.12E-03 |
| 43 | GO:0010492: maintenance of shoot apical meristem identity | 2.46E-03 |
| 44 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.46E-03 |
| 45 | GO:0009642: response to light intensity | 2.46E-03 |
| 46 | GO:0046620: regulation of organ growth | 2.46E-03 |
| 47 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 2.46E-03 |
| 48 | GO:0006402: mRNA catabolic process | 2.46E-03 |
| 49 | GO:0009867: jasmonic acid mediated signaling pathway | 2.70E-03 |
| 50 | GO:0010233: phloem transport | 2.81E-03 |
| 51 | GO:0010497: plasmodesmata-mediated intercellular transport | 2.81E-03 |
| 52 | GO:0010052: guard cell differentiation | 2.81E-03 |
| 53 | GO:0032544: plastid translation | 2.81E-03 |
| 54 | GO:0007389: pattern specification process | 2.81E-03 |
| 55 | GO:0009658: chloroplast organization | 3.06E-03 |
| 56 | GO:0030001: metal ion transport | 3.07E-03 |
| 57 | GO:0048507: meristem development | 3.17E-03 |
| 58 | GO:0000373: Group II intron splicing | 3.17E-03 |
| 59 | GO:0048589: developmental growth | 3.17E-03 |
| 60 | GO:1900865: chloroplast RNA modification | 3.55E-03 |
| 61 | GO:0031425: chloroplast RNA processing | 3.55E-03 |
| 62 | GO:0006949: syncytium formation | 3.95E-03 |
| 63 | GO:0006535: cysteine biosynthetic process from serine | 3.95E-03 |
| 64 | GO:0009682: induced systemic resistance | 4.36E-03 |
| 65 | GO:0009750: response to fructose | 4.36E-03 |
| 66 | GO:0012501: programmed cell death | 4.79E-03 |
| 67 | GO:0010582: floral meristem determinacy | 4.79E-03 |
| 68 | GO:0010152: pollen maturation | 4.79E-03 |
| 69 | GO:0010588: cotyledon vascular tissue pattern formation | 5.22E-03 |
| 70 | GO:0010102: lateral root morphogenesis | 5.22E-03 |
| 71 | GO:0009887: animal organ morphogenesis | 5.68E-03 |
| 72 | GO:0048367: shoot system development | 5.68E-03 |
| 73 | GO:0048467: gynoecium development | 5.68E-03 |
| 74 | GO:0006270: DNA replication initiation | 5.68E-03 |
| 75 | GO:0080188: RNA-directed DNA methylation | 6.14E-03 |
| 76 | GO:0009740: gibberellic acid mediated signaling pathway | 6.23E-03 |
| 77 | GO:0032259: methylation | 6.23E-03 |
| 78 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.62E-03 |
| 79 | GO:2000377: regulation of reactive oxygen species metabolic process | 7.11E-03 |
| 80 | GO:0019344: cysteine biosynthetic process | 7.11E-03 |
| 81 | GO:0009863: salicylic acid mediated signaling pathway | 7.11E-03 |
| 82 | GO:0010187: negative regulation of seed germination | 7.11E-03 |
| 83 | GO:0006825: copper ion transport | 7.62E-03 |
| 84 | GO:0030245: cellulose catabolic process | 8.67E-03 |
| 85 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.67E-03 |
| 86 | GO:0009058: biosynthetic process | 8.74E-03 |
| 87 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 9.21E-03 |
| 88 | GO:0048443: stamen development | 9.77E-03 |
| 89 | GO:0042127: regulation of cell proliferation | 9.77E-03 |
| 90 | GO:0010087: phloem or xylem histogenesis | 1.09E-02 |
| 91 | GO:0010118: stomatal movement | 1.09E-02 |
| 92 | GO:0080022: primary root development | 1.09E-02 |
| 93 | GO:0010501: RNA secondary structure unwinding | 1.09E-02 |
| 94 | GO:0009741: response to brassinosteroid | 1.15E-02 |
| 95 | GO:0010268: brassinosteroid homeostasis | 1.15E-02 |
| 96 | GO:0010305: leaf vascular tissue pattern formation | 1.15E-02 |
| 97 | GO:0007018: microtubule-based movement | 1.21E-02 |
| 98 | GO:0009749: response to glucose | 1.27E-02 |
| 99 | GO:0009739: response to gibberellin | 1.28E-02 |
| 100 | GO:0002229: defense response to oomycetes | 1.34E-02 |
| 101 | GO:0008380: RNA splicing | 1.37E-02 |
| 102 | GO:0032502: developmental process | 1.40E-02 |
| 103 | GO:0031047: gene silencing by RNA | 1.40E-02 |
| 104 | GO:0030163: protein catabolic process | 1.46E-02 |
| 105 | GO:0019760: glucosinolate metabolic process | 1.53E-02 |
| 106 | GO:0009828: plant-type cell wall loosening | 1.53E-02 |
| 107 | GO:0045893: positive regulation of transcription, DNA-templated | 1.63E-02 |
| 108 | GO:0010027: thylakoid membrane organization | 1.73E-02 |
| 109 | GO:0010029: regulation of seed germination | 1.80E-02 |
| 110 | GO:0015995: chlorophyll biosynthetic process | 1.95E-02 |
| 111 | GO:0016311: dephosphorylation | 2.02E-02 |
| 112 | GO:0080167: response to karrikin | 2.21E-02 |
| 113 | GO:0010218: response to far red light | 2.24E-02 |
| 114 | GO:0000724: double-strand break repair via homologous recombination | 2.40E-02 |
| 115 | GO:0009744: response to sucrose | 2.97E-02 |
| 116 | GO:0006629: lipid metabolic process | 3.26E-02 |
| 117 | GO:0031347: regulation of defense response | 3.40E-02 |
| 118 | GO:0006260: DNA replication | 3.40E-02 |
| 119 | GO:0009664: plant-type cell wall organization | 3.49E-02 |
| 120 | GO:0042538: hyperosmotic salinity response | 3.49E-02 |
| 121 | GO:0006417: regulation of translation | 3.95E-02 |
| 122 | GO:0009620: response to fungus | 4.42E-02 |
| 123 | GO:0009734: auxin-activated signaling pathway | 4.57E-02 |
| 124 | GO:0009624: response to nematode | 4.71E-02 |
| 125 | GO:0051726: regulation of cell cycle | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0004479: methionyl-tRNA formyltransferase activity | 0.00E+00 |
| 4 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.35E-04 |
| 5 | GO:0004016: adenylate cyclase activity | 1.35E-04 |
| 6 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.35E-04 |
| 7 | GO:0008395: steroid hydroxylase activity | 1.35E-04 |
| 8 | GO:0019843: rRNA binding | 1.48E-04 |
| 9 | GO:0004519: endonuclease activity | 2.65E-04 |
| 10 | GO:0042389: omega-3 fatty acid desaturase activity | 3.11E-04 |
| 11 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 3.11E-04 |
| 12 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 3.11E-04 |
| 13 | GO:0003723: RNA binding | 5.04E-04 |
| 14 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 5.13E-04 |
| 15 | GO:0008864: formyltetrahydrofolate deformylase activity | 5.13E-04 |
| 16 | GO:0003690: double-stranded DNA binding | 6.00E-04 |
| 17 | GO:0003727: single-stranded RNA binding | 7.52E-04 |
| 18 | GO:0010011: auxin binding | 9.73E-04 |
| 19 | GO:0003688: DNA replication origin binding | 1.51E-03 |
| 20 | GO:0043140: ATP-dependent 3'-5' DNA helicase activity | 1.51E-03 |
| 21 | GO:0009378: four-way junction helicase activity | 1.51E-03 |
| 22 | GO:0004124: cysteine synthase activity | 1.81E-03 |
| 23 | GO:0003724: RNA helicase activity | 2.81E-03 |
| 24 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.81E-03 |
| 25 | GO:0008168: methyltransferase activity | 2.91E-03 |
| 26 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.17E-03 |
| 27 | GO:0000989: transcription factor activity, transcription factor binding | 3.17E-03 |
| 28 | GO:0000175: 3'-5'-exoribonuclease activity | 5.22E-03 |
| 29 | GO:0003725: double-stranded RNA binding | 5.22E-03 |
| 30 | GO:0004190: aspartic-type endopeptidase activity | 6.14E-03 |
| 31 | GO:0003779: actin binding | 6.43E-03 |
| 32 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 8.51E-03 |
| 33 | GO:0030570: pectate lyase activity | 9.21E-03 |
| 34 | GO:0008810: cellulase activity | 9.21E-03 |
| 35 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 9.44E-03 |
| 36 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.15E-02 |
| 37 | GO:0010181: FMN binding | 1.21E-02 |
| 38 | GO:0005200: structural constituent of cytoskeleton | 1.60E-02 |
| 39 | GO:0004004: ATP-dependent RNA helicase activity | 1.95E-02 |
| 40 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.02E-02 |
| 41 | GO:0003993: acid phosphatase activity | 2.56E-02 |
| 42 | GO:0043621: protein self-association | 3.14E-02 |
| 43 | GO:0043565: sequence-specific DNA binding | 3.68E-02 |
| 44 | GO:0003777: microtubule motor activity | 3.95E-02 |
| 45 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 4.41E-02 |
| 46 | GO:0016874: ligase activity | 4.52E-02 |
| 47 | GO:0008026: ATP-dependent helicase activity | 4.91E-02 |