GO Enrichment Analysis of Co-expressed Genes with
AT3G25410
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009606: tropism | 0.00E+00 |
| 2 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
| 3 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 4 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 5 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 6 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 7 | GO:0045184: establishment of protein localization | 0.00E+00 |
| 8 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 9 | GO:0042793: transcription from plastid promoter | 1.05E-11 |
| 10 | GO:0009451: RNA modification | 3.93E-08 |
| 11 | GO:0009658: chloroplast organization | 3.10E-06 |
| 12 | GO:0016998: cell wall macromolecule catabolic process | 7.78E-05 |
| 13 | GO:1901259: chloroplast rRNA processing | 1.15E-04 |
| 14 | GO:0006955: immune response | 1.52E-04 |
| 15 | GO:0048437: floral organ development | 1.52E-04 |
| 16 | GO:0010063: positive regulation of trichoblast fate specification | 2.22E-04 |
| 17 | GO:0010480: microsporocyte differentiation | 2.22E-04 |
| 18 | GO:0035987: endodermal cell differentiation | 2.22E-04 |
| 19 | GO:0043609: regulation of carbon utilization | 2.22E-04 |
| 20 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.22E-04 |
| 21 | GO:0034757: negative regulation of iron ion transport | 2.22E-04 |
| 22 | GO:0042659: regulation of cell fate specification | 2.22E-04 |
| 23 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 2.22E-04 |
| 24 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 2.22E-04 |
| 25 | GO:0090558: plant epidermis development | 2.22E-04 |
| 26 | GO:1903866: palisade mesophyll development | 2.22E-04 |
| 27 | GO:0007389: pattern specification process | 2.40E-04 |
| 28 | GO:0010271: regulation of chlorophyll catabolic process | 4.95E-04 |
| 29 | GO:0018026: peptidyl-lysine monomethylation | 4.95E-04 |
| 30 | GO:0009662: etioplast organization | 4.95E-04 |
| 31 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.95E-04 |
| 32 | GO:0080009: mRNA methylation | 4.95E-04 |
| 33 | GO:0009875: pollen-pistil interaction | 4.95E-04 |
| 34 | GO:0006420: arginyl-tRNA aminoacylation | 4.95E-04 |
| 35 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.95E-04 |
| 36 | GO:0010254: nectary development | 4.95E-04 |
| 37 | GO:0048255: mRNA stabilization | 4.95E-04 |
| 38 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.95E-04 |
| 39 | GO:0010434: bract formation | 4.95E-04 |
| 40 | GO:0048439: flower morphogenesis | 4.95E-04 |
| 41 | GO:0045037: protein import into chloroplast stroma | 5.37E-04 |
| 42 | GO:0080117: secondary growth | 8.05E-04 |
| 43 | GO:0090391: granum assembly | 8.05E-04 |
| 44 | GO:0006518: peptide metabolic process | 8.05E-04 |
| 45 | GO:0042780: tRNA 3'-end processing | 8.05E-04 |
| 46 | GO:0001578: microtubule bundle formation | 8.05E-04 |
| 47 | GO:0009954: proximal/distal pattern formation | 8.05E-04 |
| 48 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 8.05E-04 |
| 49 | GO:0090708: specification of plant organ axis polarity | 8.05E-04 |
| 50 | GO:0006000: fructose metabolic process | 8.05E-04 |
| 51 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.15E-03 |
| 52 | GO:0046739: transport of virus in multicellular host | 1.15E-03 |
| 53 | GO:0010371: regulation of gibberellin biosynthetic process | 1.15E-03 |
| 54 | GO:1902476: chloride transmembrane transport | 1.15E-03 |
| 55 | GO:0010071: root meristem specification | 1.15E-03 |
| 56 | GO:0010239: chloroplast mRNA processing | 1.15E-03 |
| 57 | GO:0016556: mRNA modification | 1.15E-03 |
| 58 | GO:0030104: water homeostasis | 1.53E-03 |
| 59 | GO:0051322: anaphase | 1.53E-03 |
| 60 | GO:0048497: maintenance of floral organ identity | 1.95E-03 |
| 61 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.13E-03 |
| 62 | GO:0048831: regulation of shoot system development | 2.40E-03 |
| 63 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.40E-03 |
| 64 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.40E-03 |
| 65 | GO:0010315: auxin efflux | 2.40E-03 |
| 66 | GO:0009913: epidermal cell differentiation | 2.40E-03 |
| 67 | GO:0010583: response to cyclopentenone | 2.42E-03 |
| 68 | GO:0010252: auxin homeostasis | 2.74E-03 |
| 69 | GO:0009082: branched-chain amino acid biosynthetic process | 2.89E-03 |
| 70 | GO:0009942: longitudinal axis specification | 2.89E-03 |
| 71 | GO:0048509: regulation of meristem development | 2.89E-03 |
| 72 | GO:0009099: valine biosynthetic process | 2.89E-03 |
| 73 | GO:2000067: regulation of root morphogenesis | 2.89E-03 |
| 74 | GO:0009955: adaxial/abaxial pattern specification | 2.89E-03 |
| 75 | GO:0010027: thylakoid membrane organization | 3.26E-03 |
| 76 | GO:0006821: chloride transport | 3.40E-03 |
| 77 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 3.40E-03 |
| 78 | GO:0007050: cell cycle arrest | 3.40E-03 |
| 79 | GO:0009793: embryo development ending in seed dormancy | 3.82E-03 |
| 80 | GO:0010411: xyloglucan metabolic process | 3.84E-03 |
| 81 | GO:0001522: pseudouridine synthesis | 3.94E-03 |
| 82 | GO:0055075: potassium ion homeostasis | 3.94E-03 |
| 83 | GO:0030162: regulation of proteolysis | 3.94E-03 |
| 84 | GO:0048766: root hair initiation | 3.94E-03 |
| 85 | GO:0048481: plant ovule development | 4.25E-03 |
| 86 | GO:0000160: phosphorelay signal transduction system | 4.46E-03 |
| 87 | GO:0009097: isoleucine biosynthetic process | 4.51E-03 |
| 88 | GO:0006002: fructose 6-phosphate metabolic process | 4.51E-03 |
| 89 | GO:0010497: plasmodesmata-mediated intercellular transport | 4.51E-03 |
| 90 | GO:0009657: plastid organization | 4.51E-03 |
| 91 | GO:0000373: Group II intron splicing | 5.11E-03 |
| 92 | GO:0000902: cell morphogenesis | 5.11E-03 |
| 93 | GO:2000280: regulation of root development | 5.74E-03 |
| 94 | GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway | 5.74E-03 |
| 95 | GO:0006535: cysteine biosynthetic process from serine | 6.38E-03 |
| 96 | GO:0009926: auxin polar transport | 6.93E-03 |
| 97 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.06E-03 |
| 98 | GO:0048229: gametophyte development | 7.06E-03 |
| 99 | GO:0042546: cell wall biogenesis | 7.22E-03 |
| 100 | GO:0010582: floral meristem determinacy | 7.76E-03 |
| 101 | GO:0009691: cytokinin biosynthetic process | 8.48E-03 |
| 102 | GO:0010075: regulation of meristem growth | 8.48E-03 |
| 103 | GO:0009416: response to light stimulus | 8.76E-03 |
| 104 | GO:0048366: leaf development | 9.14E-03 |
| 105 | GO:0009934: regulation of meristem structural organization | 9.23E-03 |
| 106 | GO:0009736: cytokinin-activated signaling pathway | 9.36E-03 |
| 107 | GO:0006833: water transport | 1.08E-02 |
| 108 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.16E-02 |
| 109 | GO:0019344: cysteine biosynthetic process | 1.16E-02 |
| 110 | GO:0010073: meristem maintenance | 1.24E-02 |
| 111 | GO:0051302: regulation of cell division | 1.24E-02 |
| 112 | GO:0008299: isoprenoid biosynthetic process | 1.24E-02 |
| 113 | GO:0006418: tRNA aminoacylation for protein translation | 1.24E-02 |
| 114 | GO:0009553: embryo sac development | 1.30E-02 |
| 115 | GO:0010431: seed maturation | 1.33E-02 |
| 116 | GO:0010082: regulation of root meristem growth | 1.51E-02 |
| 117 | GO:0010227: floral organ abscission | 1.51E-02 |
| 118 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.51E-02 |
| 119 | GO:0071215: cellular response to abscisic acid stimulus | 1.51E-02 |
| 120 | GO:0042127: regulation of cell proliferation | 1.60E-02 |
| 121 | GO:0048364: root development | 1.69E-02 |
| 122 | GO:0070417: cellular response to cold | 1.70E-02 |
| 123 | GO:0000271: polysaccharide biosynthetic process | 1.79E-02 |
| 124 | GO:0008033: tRNA processing | 1.79E-02 |
| 125 | GO:0010087: phloem or xylem histogenesis | 1.79E-02 |
| 126 | GO:0048653: anther development | 1.79E-02 |
| 127 | GO:0000226: microtubule cytoskeleton organization | 1.79E-02 |
| 128 | GO:0009958: positive gravitropism | 1.89E-02 |
| 129 | GO:0048868: pollen tube development | 1.89E-02 |
| 130 | GO:0009741: response to brassinosteroid | 1.89E-02 |
| 131 | GO:0045489: pectin biosynthetic process | 1.89E-02 |
| 132 | GO:0010305: leaf vascular tissue pattern formation | 1.89E-02 |
| 133 | GO:0009790: embryo development | 1.96E-02 |
| 134 | GO:0007018: microtubule-based movement | 1.99E-02 |
| 135 | GO:0009646: response to absence of light | 1.99E-02 |
| 136 | GO:0048825: cotyledon development | 2.09E-02 |
| 137 | GO:0009851: auxin biosynthetic process | 2.09E-02 |
| 138 | GO:0010183: pollen tube guidance | 2.09E-02 |
| 139 | GO:0080156: mitochondrial mRNA modification | 2.19E-02 |
| 140 | GO:0016032: viral process | 2.30E-02 |
| 141 | GO:0032502: developmental process | 2.30E-02 |
| 142 | GO:0009630: gravitropism | 2.30E-02 |
| 143 | GO:0009734: auxin-activated signaling pathway | 2.47E-02 |
| 144 | GO:0009828: plant-type cell wall loosening | 2.52E-02 |
| 145 | GO:0071555: cell wall organization | 2.52E-02 |
| 146 | GO:0007166: cell surface receptor signaling pathway | 2.65E-02 |
| 147 | GO:0000910: cytokinesis | 2.74E-02 |
| 148 | GO:0010029: regulation of seed germination | 2.97E-02 |
| 149 | GO:0006974: cellular response to DNA damage stimulus | 3.09E-02 |
| 150 | GO:0009832: plant-type cell wall biogenesis | 3.57E-02 |
| 151 | GO:0048767: root hair elongation | 3.57E-02 |
| 152 | GO:0009407: toxin catabolic process | 3.70E-02 |
| 153 | GO:0006499: N-terminal protein myristoylation | 3.70E-02 |
| 154 | GO:0016051: carbohydrate biosynthetic process | 4.08E-02 |
| 155 | GO:0055085: transmembrane transport | 4.41E-02 |
| 156 | GO:0030001: metal ion transport | 4.47E-02 |
| 157 | GO:0006468: protein phosphorylation | 4.75E-02 |
| 158 | GO:0008283: cell proliferation | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 2 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 3 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 4 | GO:0003723: RNA binding | 1.14E-07 |
| 5 | GO:0004519: endonuclease activity | 2.34E-07 |
| 6 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 2.22E-04 |
| 7 | GO:0004830: tryptophan-tRNA ligase activity | 2.22E-04 |
| 8 | GO:0008836: diaminopimelate decarboxylase activity | 2.22E-04 |
| 9 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 2.22E-04 |
| 10 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.22E-04 |
| 11 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 2.22E-04 |
| 12 | GO:0052381: tRNA dimethylallyltransferase activity | 2.22E-04 |
| 13 | GO:0004160: dihydroxy-acid dehydratase activity | 2.22E-04 |
| 14 | GO:0009672: auxin:proton symporter activity | 3.46E-04 |
| 15 | GO:0016868: intramolecular transferase activity, phosphotransferases | 4.95E-04 |
| 16 | GO:0004814: arginine-tRNA ligase activity | 4.95E-04 |
| 17 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.95E-04 |
| 18 | GO:0009884: cytokinin receptor activity | 4.95E-04 |
| 19 | GO:0009982: pseudouridine synthase activity | 6.09E-04 |
| 20 | GO:0010329: auxin efflux transmembrane transporter activity | 6.09E-04 |
| 21 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 8.05E-04 |
| 22 | GO:0016805: dipeptidase activity | 8.05E-04 |
| 23 | GO:0005034: osmosensor activity | 8.05E-04 |
| 24 | GO:0017150: tRNA dihydrouridine synthase activity | 8.05E-04 |
| 25 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 8.05E-04 |
| 26 | GO:0051539: 4 iron, 4 sulfur cluster binding | 8.08E-04 |
| 27 | GO:0001872: (1->3)-beta-D-glucan binding | 1.15E-03 |
| 28 | GO:0005253: anion channel activity | 1.53E-03 |
| 29 | GO:0016279: protein-lysine N-methyltransferase activity | 1.53E-03 |
| 30 | GO:0016836: hydro-lyase activity | 1.53E-03 |
| 31 | GO:0003777: microtubule motor activity | 1.55E-03 |
| 32 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.95E-03 |
| 33 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.26E-03 |
| 34 | GO:0005247: voltage-gated chloride channel activity | 2.40E-03 |
| 35 | GO:2001070: starch binding | 2.40E-03 |
| 36 | GO:0019900: kinase binding | 2.89E-03 |
| 37 | GO:0004124: cysteine synthase activity | 2.89E-03 |
| 38 | GO:0008237: metallopeptidase activity | 2.91E-03 |
| 39 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.84E-03 |
| 40 | GO:0004222: metalloendopeptidase activity | 4.68E-03 |
| 41 | GO:0004673: protein histidine kinase activity | 6.38E-03 |
| 42 | GO:0008559: xenobiotic-transporting ATPase activity | 7.06E-03 |
| 43 | GO:0000155: phosphorelay sensor kinase activity | 8.48E-03 |
| 44 | GO:0005524: ATP binding | 1.20E-02 |
| 45 | GO:0043424: protein histidine kinase binding | 1.24E-02 |
| 46 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.33E-02 |
| 47 | GO:0004176: ATP-dependent peptidase activity | 1.33E-02 |
| 48 | GO:0033612: receptor serine/threonine kinase binding | 1.33E-02 |
| 49 | GO:0008408: 3'-5' exonuclease activity | 1.33E-02 |
| 50 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.42E-02 |
| 51 | GO:0004386: helicase activity | 1.46E-02 |
| 52 | GO:0019843: rRNA binding | 1.67E-02 |
| 53 | GO:0004812: aminoacyl-tRNA ligase activity | 1.70E-02 |
| 54 | GO:0004527: exonuclease activity | 1.89E-02 |
| 55 | GO:0003713: transcription coactivator activity | 1.89E-02 |
| 56 | GO:0019901: protein kinase binding | 2.09E-02 |
| 57 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.16E-02 |
| 58 | GO:0000156: phosphorelay response regulator activity | 2.41E-02 |
| 59 | GO:0008017: microtubule binding | 2.42E-02 |
| 60 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.63E-02 |
| 61 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.63E-02 |
| 62 | GO:0003824: catalytic activity | 2.89E-02 |
| 63 | GO:0005215: transporter activity | 2.93E-02 |
| 64 | GO:0042802: identical protein binding | 2.94E-02 |
| 65 | GO:0008375: acetylglucosaminyltransferase activity | 3.09E-02 |
| 66 | GO:0030247: polysaccharide binding | 3.20E-02 |
| 67 | GO:0005515: protein binding | 3.51E-02 |
| 68 | GO:0005096: GTPase activator activity | 3.57E-02 |
| 69 | GO:0015238: drug transmembrane transporter activity | 3.57E-02 |
| 70 | GO:0003746: translation elongation factor activity | 4.08E-02 |
| 71 | GO:0003993: acid phosphatase activity | 4.21E-02 |
| 72 | GO:0004672: protein kinase activity | 4.41E-02 |
| 73 | GO:0004364: glutathione transferase activity | 4.74E-02 |